version 1.0
Helicobacter pylori HPAG1, complete genome - 1..1596366 1536 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 152 43.87 +1 158580..159623 + 347 108562576 recA HPAG1_0151 - recombinase A 153 43.72 +1 159636..160916 + 426 108562577 eno HPAG1_0152 - phosphopyruvate hydratase 154 38.41 0 160909..161184 + 91 108562578 - HPAG1_0153 - hypothetical protein 155 37.81 0 161196..161798 + 200 108562579 - HPAG1_0154 - hypothetical protein 156 38.85 0 161803..162291 + 162 108562580 aroK HPAG1_0155 - shikimate kinase 157 40.75 0 162312..163268 + 318 108562581 - HPAG1_0156 - hypothetical protein 158 35.66 0 163265..164383 - 372 108562582 - HPAG1_0157 - lipopolysaccharide 1,2-glycosyltransferase 159 41.69 0 164535..165455 + 306 108562583 - HPAG1_0158 - cysteine-rich protein D 160 41.22 0 165996..166718 - 240 108562584 - HPAG1_0159 - hypothetical protein 161 39.40 0 166719..167690 - 323 108562585 - HPAG1_0160 - delta-aminolevulinic acid dehydratase 162 35.28 -1 167762..169045 - 427 108562586 - HPAG1_0161 - putative histidine kinase sensor protein 163 38.50 0 169071..169748 - 225 108562587 - HPAG1_0162 - response regulator 164 38.16 0 169980..170456 - 158 108562588 - HPAG1_0163 - hypothetical protein 165 33.33 -1 170435..170698 - 87 108562589 - HPAG1_0164 - hypothetical protein 166 42.00 0 170745..172013 - 422 108562590 - HPAG1_0165 - collagenase 167 41.67 0 172016..172747 - 243 108562591 - HPAG1_0166 - hypothetical protein 168 42.03 0 172822..173913 - 363 108562592 prfB HPAG1_0167 - peptide chain release factor 2 169 38.18 0 173974..175149 - 391 108562593 - HPAG1_0168 - molybdopterin biosynthesis protein 170 41.80 0 175159..175926 - 255 108562594 fliR HPAG1_0169 - flagellar biosynthesis protein FliR 171 31.55 -2 175920..176648 - 242 108562595 - HPAG1_0170 - hypothetical protein 172 39.44 0 177121..178020 + 299 108562596 - HPAG1_0171 - peptidyl-prolyl cis-trans isomerase C 173 43.29 +1 178037..178960 + 307 108562597 - HPAG1_0172 - fructose-bisphosphate aldolase 174 44.86 +1 178982..179545 + 187 108562598 - HPAG1_0173 - elongation factor P 175 35.93 0 180226..180495 + 89 108562599 - HPAG1_0174 - hypothetical protein 176 39.59 0 180487..181509 - 340 108562600 - HPAG1_0175 - sialic acid synthase 177 40.81 0 181513..182154 - 213 108562601 - HPAG1_0176 - ABC transporter 178 37.02 0 182154..183428 - 424 108562602 - HPAG1_0177 - apolipoprotein N-acyltransferase 179 38.60 0 183653..184354 + 233 108562603 - HPAG1_0178 - hypothetical protein 180 40.17 0 184364..185869 + 501 108562604 lysS HPAG1_0179 - lysyl-tRNA synthetase 181 40.85 0 185869..187119 + 416 108562605 glyA HPAG1_0180 - serine hydroxymethyltransferase 182 40.88 0 187130..187672 + 180 108562606 - HPAG1_0181 - hypothetical protein 183 38.40 0 187694..188503 + 269 108562607 - HPAG1_0182 - hypothetical protein 184 41.01 0 189275..189808 + 177 108562608 - HPAG1_0183 - hypothetical protein 185 38.17 0 189814..191322 - 502 108562609 - HPAG1_0184 - phospholipase D-family protein 186 44.04 +1 191344..192081 - 245 108562610 sdhB HPAG1_0185 - fumarate reductase iron-sulfur subunit 187 45.97 +1 192074..194218 - 714 108562611 - HPAG1_0186 - fumarate reductase flavoprotein subunit 188 40.10 0 194228..194995 - 255 108562612 - HPAG1_0187 - fumarate reductase cytochrome b-556 subunit 189 34.61 -1 195209..195913 + 234 108562613 tpiA HPAG1_0188 - triosephosphate isomerase 190 42.81 0 195923..196756 + 277 108562614 - HPAG1_0189 - enoyl-(acyl carrier protein) reductase 191 42.93 +1 196756..197766 + 336 108562615 lpxD HPAG1_0190 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 192 44.99 +1 197831..198988 + 385 108562616 - HPAG1_0191 - S-adenosylmethionine synthetase 193 42.51 0 199054..199467 + 137 108562617 - HPAG1_0192 - nucleoside diphosphate kinase 194 38.66 0 199492..199848 + 118 108562618 - HPAG1_0193 - hypothetical protein 195 42.86 +1 199864..200010 + 48 108562619 rpmF HPAG1_0194 - 50S ribosomal protein L32 196 43.21 +1 200076..201098 + 340 108562620 - HPAG1_0195 - putative glycerol-3-phosphate acyltransferase PlsX 197 43.20 +1 201123..202115 + 330 108562621 - HPAG1_0196 - 3-oxoacyl-(acyl carrier protein) synthase III 198 39.50 0 202082..202438 + 118 108562622 - HPAG1_0197 - hypothetical protein 199 39.06 0 203064..203447 - 127 108562623 - HPAG1_0198 - hypothetical protein 200 32.60 -1 203524..205164 - 546 108562624 - HPAG1_0199 - hypothetical protein 201 27.78 -2 205230..205787 - 185 108562625 - HPAG1_0200 - hypothetical protein 202 38.37 0 205999..207228 - 409 108562626 - HPAG1_0201 - putative transposase OrfB 203 33.97 -1 207215..207847 - 210 108562627 - HPAG1_0202 - putative transposase OrfA 204 36.92 0 207844..208038 - 64 108562628 - HPAG1_0203 - hypothetical protein 205 35.16 -1 208031..208249 - 72 108562629 - HPAG1_0204 - hypothetical protein 206 30.63 -2 208297..208962 - 221 108562630 - HPAG1_0205 - hypothetical protein 207 34.29 -1 208950..209054 - 34 108562632 - HPAG1_0206 - hypothetical protein 208 41.14 0 209040..210281 + 413 108562631 - HPAG1_0207 - ATP-binding protein 209 37.55 0 210295..211431 - 378 108562633 - HPAG1_0208 - lipopolysaccharide 1,2-glycosyltransferase 210 40.83 0 211362..211481 - 39 108562634 - HPAG1_0209 - lipopolysaccharide 1,2-glycosyltransferase 211 40.28 0 211636..212988 + 450 108562635 - HPAG1_0210 - outer membrane protein HofA 212 37.57 0 213091..214956 + 621 108562636 - HPAG1_0211 - heat shock protein 90 213 40.90 0 215289..216041 - 250 108562637 - HPAG1_0212 - cysteine-rich protein A 214 40.89 0 216501..217652 - 383 108562638 - HPAG1_0213 - succinyl-diaminopimelate desuccinylase 215 42.23 0 217662..219527 - 621 108562639 - HPAG1_0214 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 216 43.04 +1 219623..221281 + 552 108562640 - HPAG1_0215 - sodium-dependent transporter 217 43.07 +1 221294..222094 + 266 108562641 - HPAG1_0216 - CDP-diacylglycerol synthetase 218 41.82 0 222095..223201 + 368 108562642 - HPAG1_0217 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 219 31.70 -2 223252..223557 + 101 108562643 - HPAG1_0218 - beta-1,4-N-acetylgalactosamyltransferase 220 36.59 0 223532..224392 + 286 108562644 - HPAG1_0219 - hypothetical protein 221 42.03 0 224408..224959 - 183 108562645 - HPAG1_0220 - hypothetical protein 222 39.96 0 225083..225565 + 160 108562646 - HPAG1_0221 - hypothetical protein 223 44.44 +1 225733..226902 + 389 108562647 - HPAG1_0222 - cysteine desulfurase 224 44.34 +1 226924..227904 + 326 108562648 - HPAG1_0223 - nifU-like protein 225 35.90 0 228065..228298 + 77 108562649 - HPAG1_0224 - hypothetical protein 226 41.72 0 228392..229762 + 456 108562650 - HPAG1_0225 - DNA repair protein RadA 227 40.37 0 229886..230965 + 359 108562651 - HPAG1_0226 - bifunctional methionine sulfoxide reductase A/B protein 228 34.78 -1 231156..231362 + 68 108562652 - HPAG1_0227 - hypothetical protein 229 43.88 +1 231339..232172 - 277 108562653 - HPAG1_0228 - hypothetical protein 230 34.85 -1 232385..232450 - 21 108562654 - HPAG1_0229 - remnant of HopM 231 44.01 +1 232492..234468 - 658 108562655 - HPAG1_0230 - outer membrane protein HopM 232 41.62 0 234724..235881 + 385 108562656 - HPAG1_0231 - hypothetical protein 233 41.68 0 236130..237590 - 486 108562657 - HPAG1_0232 - outer membrane protein HopA 234 39.62 0 237786..238517 - 243 108562658 - HPAG1_0233 - 3-deoxy-manno-octulosonate cytidylyltransferase 235 39.97 0 238630..239427 + 265 108562659 - HPAG1_0234 - hypothetical protein 236 46.54 +2 239443..240093 + 216 108562660 - HPAG1_0235 - hypothetical protein 237 39.98 0 240115..241287 + 390 108562661 - HPAG1_0236 - hypothetical protein 238 39.74 0 241287..241817 + 176 108562662 - HPAG1_0237 - hypothetical protein 239 41.01 0 242589..243656 - 355 108562663 - HPAG1_0238 - cysteine-rich protein E 240 37.98 0 243750..244115 - 121 108562664 - HPAG1_0239 - hypothetical protein 241 42.89 +1 244115..245035 - 306 108562665 hemC HPAG1_0240 - porphobilinogen deaminase 242 40.54 0 245046..246779 - 577 108562666 - HPAG1_0241 - prolyl-tRNA synthetase 243 38.15 0 246783..248132 - 449 108562667 hemA HPAG1_0242 - glutamyl-tRNA reductase 244 36.36 0 248132..249055 - 307 108562668 - HPAG1_0243 - putative octaprenyl-diphosphate synthase 245 34.83 -1 249065..249466 - 133 108562669 - HPAG1_0244 - hypothetical protein 246 37.84 0 249453..249785 - 110 108562670 - HPAG1_0245 - hypothetical protein 247 37.90 0 249758..250195 - 145 108562671 - HPAG1_0246 - neutrophil activating protein 248 36.47 0 250398..251543 - 381 108562672 - HPAG1_0247 - histidine kinase sensor protein 249 35.22 -1 251540..251857 - 105 108562673 - HPAG1_0248 - hypothetical protein 250 41.98 0 251854..252882 - 342 108562674 flgI HPAG1_0249 - flagellar basal body P-ring protein 251 43.41 +1 253067..254545 + 492 108562675 - HPAG1_0250 - ATP-dependent RNA helicase 39.24 MEAN 3.61 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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