version 1.0
Helicobacter pylori HPAG1, complete genome - 1..1596366 1536 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1258 42.72 0 1308779..1309204 - 141 108563682 rplP HPAG1_1257 - 50S ribosomal protein L16 1259 44.54 +1 1309207..1309911 - 234 108563683 rpsC HPAG1_1258 - 30S ribosomal protein S3 1260 44.17 +1 1309915..1310283 - 122 108563684 rplV HPAG1_1259 - 50S ribosomal protein L22 1261 39.01 0 1310293..1310574 - 93 108563685 rpsS HPAG1_1260 - 30S ribosomal protein S19 1262 46.81 +2 1310586..1311416 - 276 108563686 rplB HPAG1_1261 - 50S ribosomal protein L2 1263 39.01 0 1311433..1311714 - 93 108563687 rplW HPAG1_1262 - 50S ribosomal protein L23 1264 43.21 +1 1311718..1312365 - 215 108563688 rplD HPAG1_1263 - 50S ribosomal protein L4 1265 45.83 +1 1312400..1312975 - 191 108563689 rplC HPAG1_1264 - 50S ribosomal protein L3 1266 43.81 +1 1313012..1313326 - 104 108563690 rpsJ HPAG1_1265 - 30S ribosomal protein S10 1267 38.02 0 1313536..1314624 + 362 108563691 - HPAG1_1266 - hypothetical protein 1268 41.45 0 1314928..1315506 + 192 108563692 - HPAG1_1267 - hypothetical protein 1269 43.09 +1 1315480..1316094 - 204 108563693 - HPAG1_1268 - ribonuclease HII 1270 40.32 0 1316186..1316371 - 61 108563694 - HPAG1_1269 - hypothetical protein 1271 44.32 +1 1316393..1317784 - 463 108563695 fumC HPAG1_1270 - fumarate hydratase 1272 42.86 +1 1317960..1318337 + 125 108563696 - HPAG1_1271 - hypothetical protein 1273 34.62 -1 1318342..1319580 + 412 108563697 - HPAG1_1272 - hypothetical protein 1274 38.15 0 1319577..1320593 + 338 108563698 - HPAG1_1273 - cation efflux system protein 1275 41.59 0 1320594..1323707 + 1037 108563699 - HPAG1_1274 - cation efflux system protein 1276 35.06 -1 1323704..1324051 - 115 108563700 - HPAG1_1275 - hypothetical protein 1277 39.45 0 1324045..1324731 - 228 108563701 - HPAG1_1276 - hypothetical protein 1278 41.89 0 1324742..1325851 - 369 108563702 - HPAG1_1277 - co-chaperone and heat shock protein 1279 37.40 0 1325976..1327106 + 376 108563703 - HPAG1_1278 - hypothetical protein 1280 32.92 -1 1327308..1327550 + 80 108563704 - HPAG1_1279 - hypothetical protein 1281 32.48 -1 1327620..1327736 + 38 108563705 - HPAG1_1280 - hypothetical protein 1282 33.33 -1 1327807..1327998 + 63 108563706 - HPAG1_1281 - hypothetical protein 1283 40.21 0 1328059..1329120 - 353 108563707 trmU HPAG1_1282 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1284 38.98 0 1329229..1329990 + 253 108563708 - HPAG1_1283 - hypothetical protein 1285 38.86 0 1329987..1330511 - 174 108563709 - HPAG1_1284 - hypothetical protein 1286 40.49 0 1330495..1330941 - 148 108563710 - HPAG1_1285 - nickel responsive regulator 1287 39.12 0 1331201..1331701 + 166 108563711 - HPAG1_1286 - biopolymer transport protein 1288 37.69 0 1331698..1332087 + 129 108563712 - HPAG1_1287 - biopolymer transport protein 1289 42.54 0 1332053..1332910 + 285 108563713 - HPAG1_1288 - siderophore-mediated iron transport protein 1290 43.24 +1 1333105..1335183 + 692 108563714 - HPAG1_1289 - outer membrane protein 1291 38.55 0 1335323..1336051 - 242 108563715 - HPAG1_1290 - hypothetical protein 1292 37.62 0 1336058..1337014 - 318 108563716 - HPAG1_1291 - magnesium and cobalt transport protein 1293 41.03 0 1337030..1338238 - 402 108563717 pgk HPAG1_1292 - phosphoglycerate kinase 1294 43.71 +1 1338254..1339246 - 330 108563718 - HPAG1_1293 - glyceraldehyde-3-phosphate dehydrogenase 1295 43.30 +1 1339335..1340036 - 233 108563719 - HPAG1_1294 - uracil-DNA glycosylase 1296 39.61 0 1340033..1340749 - 238 108563720 - HPAG1_1295 - 1-acyl-glycerol-3-phosphate acyltransferase 1297 37.01 0 1340736..1341851 - 371 108563721 - HPAG1_1296 - hypothetical protein 1298 41.96 0 1341914..1343293 - 459 108563722 - HPAG1_1297 - carboxyl-terminal protease 1299 29.39 -2 1343505..1343732 - 75 108563723 - HPAG1_1298 - type II restriction endonuclease 1300 29.77 -2 1343755..1344372 - 205 108563724 - HPAG1_1299 - hypothetical protein 1301 33.89 -1 1344372..1345451 - 359 108563725 - HPAG1_1300 - adenine specific DNA methyltransferase 1302 38.88 0 1345571..1349176 - 1201 108563726 - HPAG1_1301 - adenine specific DNA methyltransferase 1303 41.24 0 1349202..1350023 - 273 108563727 - HPAG1_1302 - nicotinate-nucleotide pyrophosphorylase 1304 40.55 0 1350023..1351033 - 336 108563728 - HPAG1_1303 - quinolinate synthetase 1305 39.43 0 1351023..1351826 - 267 108563729 - HPAG1_1304 - phosphatidylserine decarboxylase 1306 35.11 -1 1351820..1352326 - 168 108563730 - HPAG1_1305 - hypothetical protein 1307 37.32 0 1352339..1352890 - 183 108563731 - HPAG1_1306 - hypothetical protein 1308 41.24 0 1352826..1353710 - 294 108563732 ubiA HPAG1_1307 - prenyltransferase 1309 37.21 0 1353739..1355052 - 437 108563733 - HPAG1_1308 - competence locus E 1310 41.45 0 1355049..1356515 - 488 108563734 - HPAG1_1309 - replicative DNA helicase 1311 42.44 0 1356526..1357920 - 464 108563735 - HPAG1_1310 - hypothetical protein 1312 37.71 0 1357923..1359041 - 372 108563736 - HPAG1_1311 - putative histidine kinase sensor protein 1313 38.16 0 1359091..1359732 - 213 108563737 - HPAG1_1312 - response regulator 1314 33.54 -1 1359803..1361227 + 474 108563738 - HPAG1_1313 - type III restriction enzyme M protein 1315 37.68 0 1361166..1362269 + 367 108563739 - HPAG1_1314 - adenine-specific DNA methylase 1316 34.97 -1 1362280..1364655 + 791 108563740 - HPAG1_1315 - type III restriction enzyme R protein 1317 34.94 -1 1364755..1365189 + 144 108563741 - HPAG1_1316 - type III restriction enzyme R protein 1318 37.88 0 1365241..1365987 - 248 108563742 - HPAG1_1317 - rod shape-determining protein 1319 47.03 +2 1365991..1367034 - 347 108563743 - HPAG1_1318 - rod shape-determining protein 1320 42.10 0 1367077..1368000 - 307 108563744 clpX HPAG1_1319 - ATP-dependent protease ATP-binding subunit 1321 39.66 0 1368012..1368422 - 136 108563745 - HPAG1_1320 - ATP-dependent protease ATPase subunit 1322 42.68 0 1368424..1369236 - 270 108563746 - HPAG1_1321 - UDP-N-acetylglucosamine acyltransferase 1323 41.04 0 1369239..1369718 - 159 108563747 fabZ HPAG1_1322 - (3R)-hydroxymyristoyl-ACP dehydratase 1324 38.97 0 1369900..1370289 - 129 161984736 - HPAG1_1323 - flagellar assembly protein FliW 1325 37.25 0 1370709..1371371 + 220 108563749 - HPAG1_1324 - competence lipoprotein 1326 41.08 0 1371413..1373917 + 834 108563750 - HPAG1_1325 - ATP-dependent protease 1327 42.02 0 1373914..1374753 + 279 108563751 - HPAG1_1326 - prephenate dehydrogenase 1328 37.62 0 1374956..1375819 - 287 108563752 - HPAG1_1327 - putative endonuclease G 1329 33.33 -1 1375931..1377640 - 569 108563753 - HPAG1_1328 - putative type III restriction enzyme M protein 1330 34.67 -1 1377643..1380255 - 870 108563754 - HPAG1_1329 - putative type III restriction enzyme R protein 1331 43.11 +1 1380386..1381234 + 282 108563755 - HPAG1_1330 - biotin synthase 1332 37.32 0 1381234..1382112 + 292 108563756 - HPAG1_1331 - putative ribonuclease N 1333 22.86 -2 1382139..1382348 - 69 108563757 - HPAG1_1332 - hypothetical protein 1334 31.15 -2 1382436..1382618 - 60 108563758 - HPAG1_1333 - hypothetical protein 1335 29.96 -2 1386644..1386910 + 88 108563759 - HPAG1_1334 - hypothetical protein 1336 42.86 +1 1387305..1387745 + 146 108563760 - HPAG1_1335 - hypothetical protein 1337 37.32 0 1387792..1389624 + 610 108563761 - HPAG1_1336 - hypothetical protein 1338 35.37 -1 1389775..1390020 + 81 108563762 - HPAG1_1337 - hypothetical protein 1339 39.75 0 1389968..1390684 + 238 108563763 - HPAG1_1338 - hypothetical protein 1340 39.60 0 1390802..1391248 - 148 108563764 - HPAG1_1339 - 7-cyano-7-deazaguanine reductase 1341 38.01 0 1391308..1391649 + 113 108563765 - HPAG1_1340 - hypothetical protein 1342 39.59 0 1391720..1392550 + 276 108563766 miaA HPAG1_1341 - tRNA delta(2)-isopentenylpyrophosphate transferase 1343 37.95 0 1392555..1393658 + 367 108563767 - HPAG1_1342 - lipopolysaccharide 1,2-glucosyltransferase 1344 36.53 0 1393668..1395293 + 541 108563768 - HPAG1_1343 - hypothetical protein 1345 42.31 0 1395353..1396132 - 259 108563769 murB HPAG1_1344 - UDP-N-acetylenolpyruvoylglucosamine reductase 1346 40.45 0 1396136..1396402 - 88 108563770 fliQ HPAG1_1345 - flagellar biosynthesis protein FliQ 1347 45.59 +1 1396413..1397717 - 434 108563771 fliI HPAG1_1346 - flagellum-specific ATP synthase 1348 43.50 +1 1397718..1398632 - 304 108563772 - HPAG1_1347 - type IV secretion system ATPase 1349 40.17 0 1398649..1401411 - 920 108563773 ileS HPAG1_1348 - isoleucyl-tRNA synthetase 1350 40.70 0 1401435..1401692 - 85 108563774 - HPAG1_1349 - hypothetical protein 1351 42.51 0 1401794..1402414 + 206 108563775 - HPAG1_1350 - hypothetical protein 1352 38.32 0 1402541..1403422 - 293 108563776 - HPAG1_1351 - hypothetical protein 1353 52.46 +2 1403707..1403889 - 60 108563777 - HPAG1_1352 - histidine-rich metal binding polypeptide 1354 38.18 0 1404085..1405158 - 357 108563778 - HPAG1_1353 - hypothetical protein 1355 42.73 0 1405155..1406144 - 329 108563779 - HPAG1_1354 - polysialic acid capsule expression protein 1356 43.64 +1 1406128..1408203 - 691 108563780 - HPAG1_1355 - ATP/GTP binding protein 1357 39.34 0 1408241..1409056 - 271 108563781 ksgA HPAG1_1356 - dimethyladenosine transferase 39.24 MEAN 3.61 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0