version 1.0
Helicobacter pylori HPAG1, complete genome - 1..1596366 1536 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 75 41.84 0 74918..75634 - 238 108562499 - HPAG1_0074 - bifunctional urease subunit gamma/beta 76 36.92 0 75980..76453 - 157 108562500 lspA HPAG1_0075 - lipoprotein signal peptidase 77 41.33 0 76447..77784 - 445 108562501 - HPAG1_0076 - phosphoglucosamine mutase 78 38.52 0 77874..78143 + 89 108562502 rpsT HPAG1_0077 - 30S ribosomal protein S20 79 43.06 +1 78268..79326 + 352 108562503 prfA HPAG1_0078 - peptide chain release factor 1 80 41.47 0 79739..79996 + 85 108562504 - HPAG1_0079 - reminiscent outer membrane protein HorA 81 43.02 +1 80008..81711 + 567 108562505 - HPAG1_0080 - outer membrane protein HorA 82 41.91 0 81957..83693 + 578 108562506 - HPAG1_0081 - hypothetical protein 83 36.04 0 83867..83977 + 36 108562507 - HPAG1_0082 - hypothetical protein 84 39.07 0 84115..86136 - 673 108562508 - HPAG1_0083 - methyl-accepting chemotaxis protein 85 42.82 0 86288..86677 - 129 108562509 rpsI HPAG1_0084 - 30S ribosomal protein S9 86 42.02 0 86674..87099 - 141 108562510 rplM HPAG1_0085 - 50S ribosomal protein L13 87 36.51 0 87403..87591 - 62 108562511 - HPAG1_0086 - hypothetical protein 88 41.02 0 87598..88950 - 450 108562512 - HPAG1_0087 - hypothetical protein 89 40.10 0 89004..90377 - 457 108562513 - HPAG1_0088 - hypothetical protein 90 38.72 0 90398..92476 - 692 108562514 - HPAG1_0089 - RNA polymerase sigma factor RpoD 91 42.82 0 92666..93361 - 231 108562515 - HPAG1_0090 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 92 43.01 +1 93372..94301 - 309 108562516 - HPAG1_0091 - acyl-carrier-protein S-malonyltransferase 93 36.64 0 94738..95736 + 332 108562517 - HPAG1_0092 - HrgA protein 94 39.66 0 95740..96561 + 273 108562518 - HPAG1_0093 - type II adenine methyltransferase 95 40.29 0 96584..97489 - 301 108562519 - HPAG1_0094 - alpha-1,2-fucosyltransferase 96 36.72 0 97585..98115 - 176 108562520 - HPAG1_0095 - hypothetical protein 97 40.00 0 98188..99132 + 314 108562521 - HPAG1_0096 - 2-hydroxyacid dehydrogenase 98 40.90 0 99279..99992 - 237 108562522 - HPAG1_0097 - hypothetical protein 99 41.27 0 100097..101557 - 486 108562523 - HPAG1_0098 - threonine synthase 100 39.79 0 101761..103788 + 675 108562524 - HPAG1_0099 - methyl-accepting chemotaxis transmembrane sensory protein 101 38.66 0 103788..104894 + 368 108562525 - HPAG1_0100 - hypothetical protein 102 35.56 -1 105008..105769 + 253 108562526 - HPAG1_0101 - hypothetical protein 103 38.72 0 105752..106531 - 259 108562527 - HPAG1_0102 - hypothetical protein 104 41.46 0 106562..108259 - 565 108562528 - HPAG1_0103 - methyl-accepting chemotaxis protein 105 39.75 0 108461..110206 - 581 108562529 - HPAG1_0104 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase 106 44.44 +1 110374..110841 - 155 108562530 - HPAG1_0105 - S-ribosylhomocysteinase 107 46.63 +2 110879..112021 - 380 108562531 - HPAG1_0106 - cystathionine gamma-synthase/cystathionine beta-lyase 108 46.80 +2 112042..112962 - 306 108562532 - HPAG1_0107 - cysteine synthetase 109 40.04 0 113121..113642 + 173 108562533 - HPAG1_0108 - hypothetical protein 110 43.21 +1 113876..115738 - 620 108562534 - HPAG1_0109 - molecular chaperone DnaK 111 41.15 0 115769..116344 - 191 108562535 - HPAG1_0110 - co-chaperone and heat shock protein 24 112 38.75 0 116344..117174 - 276 108562536 - HPAG1_0111 - heat-inducible transcription repressor 113 40.69 0 117385..118023 + 212 108562537 - HPAG1_0112 - hypothetical protein 114 40.74 0 118044..118340 + 98 108562538 - HPAG1_0113 - hypothetical protein 115 37.31 0 118350..120236 - 628 108562539 - HPAG1_0114 - hypothetical protein 116 46.54 +2 120296..121840 - 514 108562540 - HPAG1_0115 - flagellin B 117 39.76 0 122006..124216 + 736 108562541 - HPAG1_0116 - DNA topoisomerase I 118 39.81 0 124209..125135 + 308 108562542 - HPAG1_0117 - hypothetical protein 119 33.33 -1 125275..126492 - 405 108562543 - HPAG1_0118 - hypothetical protein 120 34.47 -1 126777..128009 - 410 108562544 - HPAG1_0119 - hypothetical protein 121 42.15 0 128097..130535 - 812 108562545 - HPAG1_0120 - phosphoenolpyruvate synthase 122 39.86 0 130715..130852 + 45 108562546 - HPAG1_0121 - hypothetical protein 123 41.44 0 130909..132747 + 612 108562547 thrS HPAG1_0122 - threonyl-tRNA synthetase 124 37.75 0 132744..133355 + 203 108562548 infC HPAG1_0123 - translation initiation factor IF-3 125 41.54 0 133336..133530 + 64 108562549 rpmI HPAG1_0124 - 50S ribosomal protein L35 126 41.88 0 133624..133974 + 116 108562550 rplT HPAG1_0125 - 50S ribosomal protein L20 127 42.16 0 134174..135034 + 286 108562551 - HPAG1_0126 - outer membrane protein HorB 128 33.33 -1 135086..135211 + 41 108562552 - HPAG1_0127 - hypothetical protein 129 36.81 0 135378..135809 + 143 108562553 - HPAG1_0128 - hypothetical protein 130 39.14 0 136221..137081 + 286 108562554 - HPAG1_0129 - hypothetical protein 131 42.62 0 137683..139050 - 455 108562555 - HPAG1_0130 - L-serine deaminase 132 39.05 0 139050..140291 - 413 108562556 - HPAG1_0131 - L-serine transporter 133 44.30 +1 140473..141822 + 449 108562557 - HPAG1_0132 - tyrosine-regulated 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 134 34.81 -1 142115..142249 + 44 108562558 - HPAG1_0133 - hypothetical protein 135 40.96 0 142480..142938 - 152 108562559 - HPAG1_0134 - bacterioferritin comigratory protein 136 38.99 0 142948..143583 - 211 108562560 - HPAG1_0135 - hypothetical protein 137 42.88 +1 143576..145021 - 481 108562561 - HPAG1_0136 - putative iron-sulfur protein 138 40.19 0 145051..145779 - 242 108562562 - HPAG1_0137 - hypothetical protein 139 43.70 +1 145999..147648 + 549 108562563 - HPAG1_0138 - L-lactate permease 140 42.51 0 147698..149353 + 551 108562564 - HPAG1_0139 - L-lactate permease 141 36.88 0 149377..150363 - 328 108562565 - HPAG1_0140 - A/G-specific adenine glycosylase 142 42.51 0 150364..151812 - 482 108562566 - HPAG1_0141 - C(4)-dicarboxylates and tricarboxylates/succinate antiporter 143 42.06 0 151982..153448 + 488 108562567 - HPAG1_0142 - cytochrome c oxidase heme b and copper-binding subunit 144 43.35 +1 153461..154159 + 232 108562568 - HPAG1_0143 - cytochrome c oxidase monoheme subunit 145 34.68 -1 154167..154388 + 73 108562569 - HPAG1_0144 - cytochrome c oxidase subunit Q 146 41.75 0 154390..155268 + 292 108562570 - HPAG1_0145 - cytochrome c oxidase diheme subunit 147 36.23 0 155279..155485 + 68 108562571 - HPAG1_0146 - hypothetical protein 148 38.12 0 155586..156170 + 194 108562572 - HPAG1_0147 - hypothetical protein 149 37.23 0 156183..156773 + 196 108562573 - HPAG1_0148 - hypothetical protein 150 36.46 0 156854..157621 + 255 108562574 - HPAG1_0149 - hypothetical protein 151 38.89 0 157618..158481 - 287 108562575 - HPAG1_0150 - hypothetical protein 152 43.87 +1 158580..159623 + 347 108562576 recA HPAG1_0151 - recombinase A 153 43.72 +1 159636..160916 + 426 108562577 eno HPAG1_0152 - phosphopyruvate hydratase 154 38.41 0 160909..161184 + 91 108562578 - HPAG1_0153 - hypothetical protein 155 37.81 0 161196..161798 + 200 108562579 - HPAG1_0154 - hypothetical protein 156 38.85 0 161803..162291 + 162 108562580 aroK HPAG1_0155 - shikimate kinase 157 40.75 0 162312..163268 + 318 108562581 - HPAG1_0156 - hypothetical protein 158 35.66 0 163265..164383 - 372 108562582 - HPAG1_0157 - lipopolysaccharide 1,2-glycosyltransferase 159 41.69 0 164535..165455 + 306 108562583 - HPAG1_0158 - cysteine-rich protein D 160 41.22 0 165996..166718 - 240 108562584 - HPAG1_0159 - hypothetical protein 161 39.40 0 166719..167690 - 323 108562585 - HPAG1_0160 - delta-aminolevulinic acid dehydratase 162 35.28 -1 167762..169045 - 427 108562586 - HPAG1_0161 - putative histidine kinase sensor protein 163 38.50 0 169071..169748 - 225 108562587 - HPAG1_0162 - response regulator 164 38.16 0 169980..170456 - 158 108562588 - HPAG1_0163 - hypothetical protein 165 33.33 -1 170435..170698 - 87 108562589 - HPAG1_0164 - hypothetical protein 166 42.00 0 170745..172013 - 422 108562590 - HPAG1_0165 - collagenase 167 41.67 0 172016..172747 - 243 108562591 - HPAG1_0166 - hypothetical protein 168 42.03 0 172822..173913 - 363 108562592 prfB HPAG1_0167 - peptide chain release factor 2 169 38.18 0 173974..175149 - 391 108562593 - HPAG1_0168 - molybdopterin biosynthesis protein 170 41.80 0 175159..175926 - 255 108562594 fliR HPAG1_0169 - flagellar biosynthesis protein FliR 171 31.55 -2 175920..176648 - 242 108562595 - HPAG1_0170 - hypothetical protein 172 39.44 0 177121..178020 + 299 108562596 - HPAG1_0171 - peptidyl-prolyl cis-trans isomerase C 173 43.29 +1 178037..178960 + 307 108562597 - HPAG1_0172 - fructose-bisphosphate aldolase 174 44.86 +1 178982..179545 + 187 108562598 - HPAG1_0173 - elongation factor P 39.24 MEAN 3.61 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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