IslandPathversion 1.0

IslandPath Analysis: Helicobacter pylori HPAG1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.24 STD DEV: 3.61
Helicobacter pylori HPAG1, complete genome - 1..1596366
1536 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1046	 39.76	0	1100986..1102293	+	435	108563470	-	HPAG1_1045	-	hypothetical protein
1047	 39.97	0	1102300..1102992	-	230	108563471	-	HPAG1_1046	-	outer membrane protein HorH
1048	 40.82	0	1103242..1103802	+	186	108563472	-	HPAG1_1047	-	pyruvate flavodoxin oxidoreductase subunit gamma
1049	 43.26	+1	1103818..1104210	+	130	108563473	porD	HPAG1_1048	-	pyruvate flavodoxin oxidoreductase subunit delta
1050	 45.10	+1	1104220..1105443	+	407	108563474	porA	HPAG1_1049	-	pyruvate flavodoxin oxidoreductase subunit alpha
1051	 43.28	+1	1105456..1106400	+	314	108563475	-	HPAG1_1050	-	ferrodoxin oxidoreductase beta subunit
1052	 42.03	0	1106510..1107832	+	440	108563476	-	HPAG1_1051	-	adenylosuccinate lyase
1053	 38.37	0	1107897..1108730	+	277	108563477	-	HPAG1_1052	-	outer membrane protein Horl
1054	 40.47	0	1108727..1110703	-	658	108563478	-	HPAG1_1053	-	excinuclease ABC subunit B
1055	 35.54	-1	1110773..1111816	-	347	108563479	-	HPAG1_1054	-	hypothetical protein
1056	 38.00	0	1112089..1112859	-	256	108563480	-	HPAG1_1055	-	cysteine-rich protein X
1057	 43.54	+1	1113126..1114829	-	567	108563481	-	HPAG1_1056	-	gamma-glutamyltranspeptidase
1058	 39.43	0	1115029..1116849	-	606	108563482	flgK	HPAG1_1057	-	flagellar hook-associated protein FlgK
1059	 36.09	0	1116851..1117285	-	144	108563483	-	HPAG1_1058	-	hypothetical protein
1060	 36.20	0	1117411..1118352	-	313	108563484	-	HPAG1_1059	-	type II DNA modification enzyme
1061	 35.93	0	1118514..1118744	-	76	108563485	-	HPAG1_1060	-	hypothetical protein
1062	 30.43	-2	1118781..1118987	-	68	108563486	-	HPAG1_1061	-	hypothetical protein
1063	 43.73	+1	1119019..1119576	-	185	108563487	-	HPAG1_1062	-	peptidyl-prolyl cis-trans isomerase
1064	 37.55	0	1119563..1120558	-	331	108563488	-	HPAG1_1063	-	hypothetical protein
1065	 39.63	0	1120566..1121105	-	179	108563489	-	HPAG1_1064	-	peptidoglycan-associated lipoprotein precursor
1066	 37.24	0	1121172..1122425	-	417	108563490	tolB	HPAG1_1065	-	translocation protein TolB
1067	 34.30	-1	1122422..1123246	-	274	108563491	-	HPAG1_1066	-	hypothetical protein
1068	 36.07	0	1123265..1123666	-	133	108563492	-	HPAG1_1067	-	biopolymer transport protein
1069	 37.72	0	1123719..1124288	-	189	108563493	-	HPAG1_1068	-	biopolymer transport protein
1070	 44.09	+1	1124299..1124670	-	123	108563494	atpC	HPAG1_1069	-	F0F1 ATP synthase subunit epsilon
1071	 45.11	+1	1124681..1126090	-	469	108563495	-	HPAG1_1070	-	F0F1 ATP synthase subunit beta
1072	 37.09	0	1126114..1127019	-	301	108563496	-	HPAG1_1071	-	F0F1 ATP synthase subunit gamma
1073	 44.18	+1	1127034..1128545	-	503	108563497	-	HPAG1_1072	-	F0F1 ATP synthase subunit alpha
1074	 33.70	-1	1128568..1129110	-	180	108563498	-	HPAG1_1073	-	F0F1 ATP synthase subunit delta
1075	 33.33	-1	1129111..1129626	-	171	108563499	-	HPAG1_1074	-	F0F1 ATP synthase subunit B
1076	 41.38	0	1129630..1130064	-	144	108563500	-	HPAG1_1075	-	F0F1 ATP synthase subunit B'
1077	 38.03	0	1130175..1131047	-	290	108563501	-	HPAG1_1076	-	plasmid replication-partition related protein
1078	 39.87	0	1131051..1131845	-	264	108563502	-	HPAG1_1077	-	spoOJ regulator
1079	 39.59	0	1131848..1132486	-	212	108563503	-	HPAG1_1078	-	biotin--protein ligase
1080	 39.54	0	1132483..1133400	-	305	108563504	fmt	HPAG1_1079	-	methionyl-tRNA formyltransferase
1081	 29.78	-2	1133402..1135849	-	815	108563505	-	HPAG1_1080	-	hypothetical protein
1082	 40.42	0	1135910..1137208	-	432	108563506	-	HPAG1_1081	-	hypothetical protein
1083	 43.75	+1	1137467..1137562	+	31	108563507	-	HPAG1_1082	-	hypothetical protein
1084	 29.23	-2	1137948..1138142	-	64	108563508	-	HPAG1_1083	-	hypothetical protein
1085	 42.22	0	1140747..1141106	-	119	108563509	-	HPAG1_1084	-	hypothetical protein
1086	 36.71	0	1141099..1141335	-	78	108563510	-	HPAG1_1085	-	hypothetical protein
1087	 45.66	+1	1141947..1142303	-	118	108563511	rplS	HPAG1_1086	-	50S ribosomal protein L19
1088	 38.70	0	1142326..1143015	-	229	108563512	trmD	HPAG1_1087	-	tRNA (guanine-N(1)-)-methyltransferase
1089	 37.48	0	1143016..1143570	-	184	108563513	-	HPAG1_1088	-	hypothetical protein
1090	 40.12	0	1143571..1143894	-	107	108563514	-	HPAG1_1089	-	hypothetical protein
1091	 41.99	0	1143911..1144141	-	76	108563515	rpsP	HPAG1_1090	-	30S ribosomal protein S16
1092	 41.65	0	1144215..1145561	-	448	108563516	-	HPAG1_1091	-	signal recognition particle protein
1093	 39.70	0	1145576..1148200	-	874	108563517	valS	HPAG1_1092	-	valyl-tRNA synthetase
1094	 37.01	0	1148331..1148738	+	135	108563518	-	HPAG1_1093	-	flagellar assembly protein FliW
1095	 41.34	0	1148750..1149811	+	353	108563519	murG	HPAG1_1094	-	N-acetylglucosaminyl transferase
1096	 42.80	0	1149919..1152009	+	696	108563520	-	HPAG1_1095	-	outer membrane protein HopI
1097	 42.25	0	1152032..1155754	+	1240	108563521	-	HPAG1_1096	-	outer membrane protein HopL
1098	 41.34	0	1155770..1156543	+	257	108563522	-	HPAG1_1097	-	pyrroline-5-carboxylate reductase
1099	 36.89	0	1156571..1157104	+	177	108563523	-	HPAG1_1098	-	cell filamentation protein
1100	 41.84	0	1157351..1157773	-	140	108563524	-	HPAG1_1099	-	putative metalloprotease
1101	 42.83	0	1157827..1158321	-	164	108563525	-	HPAG1_1100	-	flavodoxin FldA
1102	 37.97	0	1158413..1158994	-	193	108563526	-	HPAG1_1101	-	hypothetical protein
1103	 39.06	0	1159117..1159308	+	63	108563527	-	HPAG1_1102	-	cation transport subunit for cbb3-type oxidase
1104	 41.64	0	1159334..1160308	+	324	108563528	-	HPAG1_1103	-	thioredoxin reductase
1105	 38.42	0	1160315..1161475	-	386	108563529	-	HPAG1_1104	-	tetracycline resistance protein tetA(P)
1106	 40.66	0	1161539..1163176	+	545	108563530	-	HPAG1_1105	-	glucose-6-phosphate isomerase
1107	 43.29	+1	1163482..1164897	+	471	108563531	-	HPAG1_1106	-	outer membrane protein HofH
1108	 44.38	+1	1165190..1167253	-	687	108563532	-	HPAG1_1107	-	carbon starvation protein
1109	 39.14	0	1167463..1168116	+	217	108563533	-	HPAG1_1108	-	glutamine ABC transporter, permease protein
1110	 39.29	0	1168119..1168790	+	223	108563534	-	HPAG1_1109	-	glutamine ABC transporter, permease protein
1111	 38.42	0	1168792..1169538	+	248	108563535	-	HPAG1_1110	-	glutamine ABC transporter, ATP-binding protein
1112	 37.53	0	1169587..1170420	+	277	108563536	-	HPAG1_1111	-	glutamine ABC transporter, periplasmic glutamine-binding protein
1113	 39.31	0	1170542..1171093	+	183	108563537	-	HPAG1_1112	-	hypothetical protein
1114	 43.30	+1	1171316..1172539	-	407	108563538	-	HPAG1_1113	-	glucose/galactose transporter
1115	 44.34	+1	1172668..1173975	-	435	108563539	-	HPAG1_1114	-	hypothetical protein
1116	 40.24	0	1174427..1176352	-	641	108563540	-	HPAG1_1115	-	outer membrane protein HopQ
1117	 35.48	-1	1176598..1176690	+	30	108563541	-	HPAG1_1116	-	hypothetical protein
1118	 41.88	0	1176813..1177514	-	233	108563542	-	HPAG1_1117	-	purine-nucleoside phosphorylase
1119	 39.05	0	1177511..1178752	-	413	108563543	-	HPAG1_1118	-	phosphopentomutase
1120	 45.19	+1	1178764..1180020	-	418	108563544	-	HPAG1_1119	-	pyrimidine nucleoside transport protein
1121	 41.14	0	1180333..1181664	+	443	108563545	-	HPAG1_1120	-	multidrug-efflux transporter
1122	 42.13	0	1181684..1182445	+	253	108563546	-	HPAG1_1121	-	hypothetical protein
1123	 38.19	0	1182454..1183605	-	383	108563547	-	HPAG1_1122	-	Na+/H+ antiporter
1124	 39.57	0	1183631..1185010	-	459	108563549	-	HPAG1_1123	-	hypothetical protein
1125	 29.35	-2	1184984..1185184	+	66	108563548	-	HPAG1_1124	-	hypothetical protein
1126	 43.62	+1	1185171..1186346	-	391	108563550	-	HPAG1_1125	-	sugar efflux transporter
1127	 42.07	0	1186622..1187365	+	247	108563551	-	HPAG1_1126	-	alpha-carbonic anhydrase
1128	 35.14	-1	1187586..1188635	-	349	108563552	-	HPAG1_1127	-	hypothetical protein
1129	 33.51	-1	1188900..1190063	-	387	108563553	-	HPAG1_1128	-	hypothetical protein
1130	 34.36	-1	1190348..1191415	-	355	108563554	-	HPAG1_1129	-	hypothetical protein
1131	 42.84	0	1191843..1192883	-	346	108563555	-	HPAG1_1130	-	aspartate-semialdehyde dehydrogenase
1132	 38.45	0	1192870..1194198	-	442	108563556	hisS	HPAG1_1131	-	histidyl-tRNA synthetase
1133	 40.38	0	1194260..1195309	+	349	108563557	-	HPAG1_1132	-	ADP-heptose-LPS heptosyltransferase II
1134	 35.38	-1	1195501..1195890	-	129	108563558	-	HPAG1_1133	-	hypothetical protein
1135	 45.31	+1	1196244..1198322	-	692	108563559	-	HPAG1_1134	-	elongation factor G
1136	 44.23	+1	1198334..1198801	-	155	108563560	-	HPAG1_1135	-	30S ribosomal protein S7
1137	 42.16	0	1198817..1199224	-	135	108563561	rpsL	HPAG1_1136	-	30S ribosomal protein S12
1138	 43.48	+1	1199313..1207985	-	2890	108563562	-	HPAG1_1137	-	DNA-directed RNA polymerase subunit beta/beta'
1139	 42.06	0	1208215..1208592	-	125	108563563	rplL	HPAG1_1138	-	50S ribosomal protein L7/L12
1140	 39.80	0	1208638..1209132	-	164	108563564	rplJ	HPAG1_1139	-	50S ribosomal protein L10
1141	 44.11	+1	1209241..1209945	-	234	108563565	rplA	HPAG1_1140	-	50S ribosomal protein L1
1142	 42.49	0	1209990..1210415	-	141	108563566	rplK	HPAG1_1141	-	50S ribosomal protein L11
1143	 39.92	0	1210433..1210963	-	176	108563567	nusG	HPAG1_1142	-	transcription antitermination protein NusG
1144	 37.22	0	1210990..1211169	-	59	108563568	secE	HPAG1_1143	-	preprotein translocase subunit SecE
1145	 35.85	0	1211427..1211585	-	52	108563569	rpmG	HPAG1_1144	-	50S ribosomal protein L33
39.24	MEAN

3.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.