IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
925	 33.44	0	895838..896812	-	324	32266424	-	HH0925	-	hypothetical protein
926	 36.49	0	896888..898282	-	464	32266425	gltX	HH0926	-	glutamyl-tRNA synthetase
927	 36.56	0	898426..899478	+	350	32266426	murG	HH0927	-	N-acetylglucosaminyl transferase
928	 36.36	0	899641..900399	+	252	32266427	lexA	HH0928	-	exodeoxyribonuclease LexA
929	 34.44	0	900423..901052	+	209	32266428	-	HH0929	-	hypothetical protein
930	 32.80	0	902671..903975	+	434	32266429	-	HH0930	-	hypothetical protein
931	 35.99	0	903972..906002	-	676	32266430	rep	HH0931	-	ATP-dependent DNA helicase
932	 36.19	0	906013..906432	-	139	32266431	-	HH0932	-	flagellar assembly protein FliW
933	 37.81	0	906508..909207	+	899	32266432	valS	HH0933	-	valyl-tRNA synthetase
934	 35.62	0	909813..910949	+	378	32266433	-	HH0934	-	hypothetical protein
935	 40.34	+1	910958..911314	-	118	32266434	rplS	HH0935	-	50S ribosomal protein L19
936	 35.54	0	911311..912036	-	241	32266435	trmD	HH0936	-	tRNA (guanine-N(1)-)-methyltransferase
937	 37.88	0	912033..912494	-	153	32266436	-	HH0937	-	hypothetical protein
938	 36.25	0	912581..912820	-	79	32266437	-	HH0938	-	hypothetical protein
939	 40.60	+1	912836..913069	-	77	32266438	rpsP	HH0939	-	30S ribosomal protein S16
940	 38.17	0	913144..914487	-	447	32266439	ffh	HH0940	-	signal recognition particle protein
941	 20.72	-2	914523..914633	+	36	32266440	-	HH0941	-	hypothetical protein
942	 35.04	0	914630..915040	+	136	32266441	-	HH0942	-	transcriptional regulator
943	 38.22	0	915045..917090	-	681	32266442	-	HH0943	-	hypothetical protein
944	 36.73	0	917096..918154	-	352	32266443	-	HH0944	-	hypothetical protein
945	 39.62	+1	918155..918631	-	158	32266444	-	HH0945	-	3-dehydroquinate dehydratase
946	 35.79	0	918751..920421	-	556	32266445	-	HH0946	-	hypothetical protein
947	 39.67	+1	920427..921578	-	383	32266446	-	HH0947	-	hypothetical protein
948	 30.80	-1	921637..921912	-	91	32266447	-	HH0948	-	hypothetical protein
949	 32.11	-1	922013..922258	+	81	32266448	-	HH0949	-	hypothetical protein
950	 41.46	+1	922405..924891	-	828	32266449	bisC	HH0950	-	biotin sulfoxide reductase BisC
951	 37.88	0	924891..925484	-	197	32266450	-	HH0951	-	hypothetical protein
952	 38.13	0	925592..926404	-	270	32266451	-	HH0952	-	hypothetical protein
953	 31.70	-1	926401..926829	-	142	32266452	-	HH0953	-	hypothetical protein
954	 41.35	+1	926836..928083	-	415	32266453	purA	HH0954	-	adenylosuccinate synthetase
955	 36.30	0	928113..928955	-	280	32266454	hisZ	HH0955	-	ATP phosphoribosyltransferase regulatory subunit
956	 38.54	0	929079..930116	+	345	32266455	trmU	HH0956	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
957	 35.90	0	930235..930624	+	129	32266456	-	HH0957	-	hypothetical protein
958	 24.49	-2	930633..930779	-	48	32266457	-	HH0958	-	hypothetical protein
959	 32.58	0	930886..931284	+	132	32266458	-	HH0959	-	hypothetical protein
960	 33.79	0	931337..931993	+	218	32266459	-	HH0960	-	hypothetical protein
961	 33.33	0	932075..932242	+	55	32266460	-	HH0961	-	hypothetical protein
962	 35.27	0	933061..933525	-	154	32266461	-	HH0962	-	hypothetical protein
963	 38.39	0	933509..933943	-	144	32266462	-	HH0963	-	hypothetical protein
964	 40.83	+1	933946..935253	-	435	32266463	hemL	HH0964	-	glutamate-1-semialdehyde aminotransferase
965	 30.11	-1	935277..935369	+	30	32266464	-	HH0965	-	hypothetical protein
966	 35.83	0	935462..936022	+	186	32266465	-	HH0966	-	hypothetical protein
967	 32.23	0	936181..937902	+	573	32266466	-	HH0967	-	hypothetical protein
968	 34.64	0	938005..938538	-	177	32266467	-	HH0968	-	hypothetical protein
969	 39.75	+1	938727..939926	+	399	32266468	argD	HH0969	-	acetylornithine aminotransferase
970	 34.88	0	939907..941004	+	365	32266469	-	HH0970	-	hypothetical protein
971	 34.74	0	941085..943076	+	663	32266470	-	HH0971	-	hypothetical protein
972	 36.11	0	943104..944147	-	347	32266471	-	HH0972	-	hypothetical protein
973	 37.40	0	944229..945089	-	286	32266472	-	HH0973	-	hypothetical protein
974	 39.28	0	945230..946540	-	436	32266473	-	HH0974	-	hypothetical protein
975	 36.93	0	946550..947938	-	462	32266474	hemN_1	HH0975	-	coproporphyrinogen III oxidase
976	 32.87	0	947953..948384	-	143	32266475	-	HH0976	-	hypothetical protein
977	 40.51	+1	948388..949377	-	329	32266476	argF	HH0977	-	ornithine carbamoyltransferase
978	 36.65	0	949453..950025	-	190	32266477	-	HH0978	-	hypothetical protein
979	 39.77	+1	950049..950747	-	232	32266478	-	HH0979	-	hypothetical protein
980	 33.60	0	951092..951847	-	251	32266479	-	HH0980	-	hypothetical protein
981	 32.34	0	951837..952838	-	333	32266480	-	HH0981	-	hypothetical protein
982	 36.19	0	958823..959767	-	314	32266481	-	HH0982	-	lipid A biosynthesis lauroyl acyltransferase
983	 35.34	0	959767..960861	-	364	32266482	-	HH0983	-	lipopolysaccharide heptosyltransferase
984	 36.66	0	960885..962357	-	490	32266483	ppx	HH0984	-	exopolyphosphatase
985	 41.27	+1	962357..962608	-	83	32266484	fdxB	HH0985	-	ferredoxin
986	 39.17	0	962680..963330	-	216	32266485	-	HH0986	-	hypothetical protein
987	 29.63	-1	963348..963455	-	35	32266486	-	HH0987	-	hypothetical protein
988	 23.81	-2	963965..964069	-	34	32266487	-	HH0988	-	hypothetical protein
989	 35.89	0	964113..965051	+	312	32266488	-	HH0989	-	hypothetical protein
990	 37.77	0	965008..966270	-	420	32266489	-	HH0990	-	hypothetical protein
991	 39.24	0	966321..967421	-	366	32266490	-	HH0991	-	hypothetical protein
992	 37.27	0	967445..969682	-	745	32266491	-	HH0992	-	outer membrane protein
993	 38.28	0	969751..970599	-	282	32266492	tyrA	HH0993	-	prephenate dehydrogenase
994	 34.74	0	970627..971337	-	236	32266493	-	HH0994	-	hypothetical protein
995	 31.24	-1	971338..971766	-	142	32266494	-	HH0995	-	hypothetical protein
996	 35.90	0	971883..972818	+	311	32266495	hemH	HH0996	-	ferrochelatase
997	 32.85	0	972844..973464	+	206	32266496	-	HH0997	-	hypothetical protein
998	 37.28	0	973476..976286	+	936	32266497	-	HH0998	-	cytochrome c biogenesis protein
999	 34.56	0	976341..978386	+	681	32266498	-	HH0999	-	hypothetical protein
1000	 34.03	0	978924..979496	-	190	32266499	-	HH1000	-	hypothetical protein
1001	 37.52	0	979529..980221	-	230	32266500	ybbA	HH1001	-	ABC transporter
1002	 36.52	0	980385..980918	+	177	32266501	-	HH1002	-	hypothetical protein
1003	 35.98	0	980432..980923	-	163	32266502	-	HH1003	-	hypothetical protein
1004	 22.81	-2	981080..981193	-	37	32266503	-	HH1004	-	hypothetical protein
1005	 38.75	0	981360..982226	-	288	32266504	-	HH1005	-	hypothetical protein
1006	 37.72	0	982465..983694	-	409	32266505	-	HH1006	-	ubiquinol cytochrome c oxidoreductase
1007	 46.08	+2	983704..984213	-	169	32266506	-	HH1007	-	ubiquinol cytochrome C oxidoreductase
1008	 35.76	0	984364..985188	+	274	32266507	nadE	HH1008	-	NH(3)-dependent NAD(+) synthetase NadE
1009	 38.54	0	985198..986100	+	300	32266508	lpxK	HH1009	-	tetraacyldisaccharide 4'-kinase
1010	 36.82	0	986130..986588	+	152	32266509	bcp	HH1010	-	bacterioferritin comigratory protein Bcp
1011	 38.20	0	986623..989271	-	882	32266510	infB	HH1011	-	translation initiation factor IF-2
1012	 34.92	0	989259..989510	-	83	32266511	-	HH1012	-	hypothetical protein
1013	 37.33	0	989530..990429	-	299	32266512	thrB	HH1013	-	homoserine kinase
1014	 35.80	0	990546..991031	-	161	32266513	-	HH1014	-	hypothetical protein
1015	 37.22	0	991065..991964	-	299	32266514	lpxC	HH1015	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1016	 37.35	0	991961..992557	-	198	32266515	minC	HH1016	-	septum formation inhibitor
1017	 35.43	0	992571..993956	-	461	32266516	-	HH1017	-	hypothetical protein
1018	 35.46	0	994014..995141	-	375	32266517	flhB	HH1018	-	flagellar biosynthesis protein FlhB
1019	 37.02	0	995145..995714	-	189	32266518	mobA	HH1019	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1020	 36.94	0	995808..996806	+	332	32266519	moaA	HH1020	-	molybdenum cofactor biosynthesis protein A
1021	 37.48	0	996902..997987	+	361	32266520	-	HH1021	-	hypothetical protein
1022	 36.39	0	998096..1000483	+	795	32266521	-	HH1022	-	cation-transporting ATPase
1023	 41.04	+1	1000593..1001708	+	371	32266522	-	HH1023	-	hypothetical protein
1024	 34.31	0	1001785..1001988	-	67	32266523	-	HH1024	-	hypothetical protein
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.