IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
728	 32.90	0	709006..709236	-	76	32266227	-	HH0728	-	acyl carrier protein
729	 31.22	-1	709267..709455	+	62	32266228	-	HH0729	-	hypothetical protein
730	 33.92	0	709452..710132	-	226	32266229	-	HH0730	-	hypothetical protein
731	 40.38	+1	710145..710300	-	51	32266230	-	HH0731	-	hypothetical protein
732	 38.31	0	710397..711140	-	247	32266231	fabG	HH0732	-	3-ketoacyl-(acyl-carrier-protein) reductase
733	 34.93	0	711191..713506	-	771	32266232	-	HH0733	-	hypothetical protein
734	 35.44	0	713503..718950	-	1815	32266233	-	HH0734	-	hypothetical protein
735	 37.83	0	719034..719945	-	303	32266234	sfhB	HH0735	-	hypothetical protein
736	 33.33	0	720685..722130	-	481	32266235	-	HH0736	-	hypothetical protein
737	 20.00	-2	722273..722392	+	39	32266236	-	HH0737	-	hypothetical protein
738	 35.99	0	722420..723247	+	275	32266237	-	HH0738	-	amino-acid ABC transporter periplasmic solute-binding protein
739	 37.15	0	723285..723782	-	165	32266238	msrA	HH0739	-	methionine sulfoxide reductase A
740	 37.64	0	723867..725237	+	456	32266239	selA	HH0740	-	selenocysteine synthase
741	 36.91	0	725248..727146	+	632	32266240	selB	HH0741	-	selenocysteine-specific elongation factor SelB
742	 36.78	0	727163..728266	+	367	32266241	-	HH0742	-	hypothetical protein
743	 38.50	0	728277..729515	+	412	32266242	moeA_2	HH0743	-	molybdopterin biosynthesis enzyme
744	 34.29	0	729543..729959	+	138	32266243	-	HH0744	-	hypothetical protein
745	 38.16	0	729969..731624	+	551	32266244	-	HH0745	-	hypothetical protein
746	 29.71	-1	731701..732141	+	146	32266245	-	HH0746	-	hypothetical protein
747	 31.58	-1	732226..732339	-	37	32266246	-	HH0747	-	hypothetical protein
748	 39.88	+1	732416..733102	-	228	32266247	-	HH0748	-	hypothetical protein
749	 37.57	0	733425..733613	+	62	32266248	-	HH0749	-	hypothetical protein
750	 42.17	+1	733628..735880	+	750	32266249	-	HH0750	-	hypothetical protein
751	 37.88	0	735939..736070	+	43	32266250	-	HH0751	-	hypothetical protein
752	 41.81	+1	736252..737124	+	290	32266251	-	HH0752	-	hypothetical protein
753	 35.52	0	737135..737317	+	60	32266252	-	HH0753	-	hypothetical protein
754	 40.62	+1	737308..737787	+	159	32266253	-	HH0754	-	hypothetical protein
755	 42.12	+1	737818..738204	+	128	32266254	-	HH0755	-	hypothetical protein
756	 38.10	0	738204..738455	+	83	32266255	-	HH0756	-	hypothetical protein
757	 33.33	0	738627..738857	+	76	32266256	-	HH0757	-	hypothetical protein
758	 28.37	-2	738850..739353	+	167	32266257	-	HH0758	-	hypothetical protein
759	 39.63	+1	739466..740005	-	179	32266258	-	HH0759	-	hypothetical protein
760	 41.42	+1	740016..741512	-	498	32266259	-	HH0760	-	hypothetical protein
761	 40.07	+1	741727..742557	-	276	32266260	-	HH0761	-	hypothetical protein
762	 35.88	0	742721..743074	+	117	32266261	-	HH0762	-	hypothetical protein
763	 42.86	+1	743058..743267	+	69	32266262	-	HH0763	-	hypothetical protein
764	 39.15	0	743264..743452	+	62	32266263	-	HH0764	-	hypothetical protein
765	 43.49	+2	743449..743763	+	104	32266264	-	HH0765	-	hypothetical protein
766	 32.38	0	743760..743864	+	34	32266265	-	HH0766	-	hypothetical protein
767	 38.80	0	743877..744443	+	188	32266266	-	HH0767	-	hypothetical protein
768	 42.06	+1	744506..745078	+	190	32266267	-	HH0768	-	hypothetical protein
769	 34.97	0	745179..745484	+	101	32266268	-	HH0769	-	hypothetical protein
770	 35.94	0	745547..745738	+	63	32266269	-	HH0770	-	hypothetical protein
771	 39.57	+1	745735..747402	+	555	32266270	-	HH0771	-	hypothetical protein
772	 39.40	+1	747418..748290	+	290	32266271	-	HH0772	-	hypothetical protein
773	 35.76	0	748506..750071	+	521	32266272	-	HH0773	-	hypothetical protein
774	 34.76	0	750112..751998	-	628	32266273	-	HH0774	-	hypothetical protein
775	 30.57	-1	751995..752681	-	228	32266274	-	HH0775	-	hypothetical protein
776	 35.75	0	752678..753421	-	247	32266275	yhcG	HH0776	-	ABC transporter
777	 34.27	0	753513..753725	-	70	32266276	rpsU	HH0777	-	30S ribosomal protein S21
778	 38.85	0	753962..755176	-	404	32266277	ftsZ	HH0778	-	cell division protein FtsZ
779	 37.42	0	755189..756559	-	456	32266278	ftsA	HH0779	-	cell division protein FtsA
780	 34.60	0	756567..758066	-	499	32266279	-	HH0780	-	hypothetical protein
781	 20.93	-2	758093..758221	-	42	32266280	-	HH0781	-	hypothetical protein
782	 32.81	0	758294..759436	-	380	32266281	ftsW_1	HH0782	-	cell division membrane protein FtsW/MrdB/SpoVE
783	 37.69	0	759497..760552	+	351	32266282	-	HH0783	-	ribosomal pseudouridine synthase
784	 36.65	0	760482..761747	+	421	32266283	-	HH0784	-	hypothetical protein
785	 34.17	0	761747..762937	+	396	32266284	trmB	HH0785	-	tRNA (guanine-N(7))-methyltransferase
786	 36.02	0	762941..763609	+	222	32266285	ftsE	HH0786	-	ABC transporter
787	 34.57	0	763596..764405	+	269	32266286	ftsX	HH0787	-	cell division protein FtsX
788	 32.70	0	764353..765624	+	423	32266287	-	HH0788	-	hypothetical protein
789	 32.82	0	765679..766071	+	130	32266288	flaG	HH0789	-	flagellar protein FlaG
790	 35.29	0	766121..768169	+	682	32266289	fliD	HH0790	-	flagellar capping protein
791	 35.16	0	768180..768563	+	127	32266290	fliS	HH0791	-	flagellar protein FliS
792	 38.46	0	768547..768780	+	77	32266291	-	HH0792	-	hypothetical protein
793	 34.72	0	768908..769195	+	95	32266292	-	HH0793	-	histone-like DNA-binding protein HU (HupB)
794	 39.42	+1	769221..770156	-	311	32266293	gpsA	HH0794	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
795	 34.36	0	770200..770880	-	226	32266294	-	HH0795	-	hypothetical protein
796	 40.98	+1	771081..772505	+	474	32266295	gatB	HH0796	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
797	 33.63	0	772873..775932	+	1019	32266296	-	HH0797	-	hypothetical protein
798	 32.26	0	775929..779099	+	1056	32266297	-	HH0798	-	hypothetical protein
799	 26.97	-2	779190..780509	+	439	32266298	-	HH0799	-	hypothetical protein
800	 29.43	-1	780641..781690	+	349	32266299	-	HH0800	-	hypothetical protein
801	 23.61	-2	782105..782248	+	47	32266300	-	HH0801	-	hypothetical protein
802	 36.67	0	782301..782450	+	49	32266301	-	HH0802	-	hypothetical protein
803	 25.00	-2	782535..782630	-	31	32266302	-	HH0803	-	hypothetical protein
804	 34.04	0	782664..783227	-	187	32266303	-	HH0804	-	hypothetical protein
805	 33.90	0	783232..784812	-	526	32266304	-	HH0805	-	hypothetical protein
806	 39.79	+1	784814..786052	-	412	32266305	proA	HH0806	-	gamma-glutamyl phosphate reductase
807	 40.28	+1	786052..787116	-	354	32266306	ispG	HH0807	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
808	 39.67	+1	787130..787555	+	141	32266307	hypA	HH0808	-	hydrogenase nickel incorporation protein
809	 35.96	0	787568..788023	+	151	32266308	-	HH0809	-	hypothetical protein
810	 39.07	0	788039..789205	+	388	32266309	lpxB	HH0810	-	lipid-A-disaccharide synthase
811	 39.48	+1	789458..790855	+	465	32266310	-	HH0811	-	hypothetical protein
812	 36.77	0	790961..791629	-	222	32266311	-	HH0812	-	hypothetical protein
813	 35.20	0	791998..792906	-	302	32266312	-	HH0813	-	hypothetical protein
814	 32.52	0	792918..793781	-	287	32266313	-	HH0814	-	hypothetical protein
815	 34.29	0	793718..794452	-	244	32266314	-	HH0815	-	hypothetical protein
816	 36.59	0	794553..795320	-	255	32266315	-	HH0816	-	hypothetical protein
817	 38.70	0	795321..796307	-	328	32266316	-	HH0817	-	hypothetical protein
818	 37.54	0	796308..797543	-	411	32266317	nspC	HH0818	-	carboxynorspermidine decarboxylase NspC
819	 36.85	0	797530..798495	-	321	32266318	-	HH0819	-	chemotaxis signal transduction protein CheV
820	 33.47	0	798553..799275	-	240	32266319	pssA	HH0820	-	phosphatidylserine synthase PssA
821	 35.86	0	799265..799897	-	210	32266320	-	HH0821	-	hypothetical protein
822	 39.81	+1	799907..801742	-	611	32266321	ftsH_2	HH0822	-	membrane bound zinc metallopeptidase
823	 30.83	-1	801739..801858	-	39	32266322	-	HH0823	-	hypothetical protein
824	 33.65	0	801831..802784	-	317	32266323	prmA	HH0824	-	ribosomal protein L11 methyltransferase
825	 37.57	0	802806..803183	-	125	32266324	cheY	HH0825	-	chemotaxis regulatory protein CheY
826	 37.57	0	803271..804002	-	243	32266325	hisA	HH0826	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
827	 31.23	-1	804005..804859	-	284	32266326	-	HH0827	-	hypothetical protein
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.