IslandPathversion 1.0

IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.80 STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
703	 32.13	-1	683552..683800	+	82	32266202	-	HH0703	-	hypothetical protein
704	 35.65	0	683806..684582	+	258	32266203	fliR	HH0704	-	flagellar biosynthesis protein FliR
705	 32.10	-1	684584..685150	-	188	32266204	-	HH0705	-	hypothetical protein
706	 35.98	0	685229..687043	+	604	32266205	-	HH0706	-	hypothetical protein
707	 35.66	0	687043..687645	+	200	32266206	gmk	HH0707	-	guanylate kinase
708	 30.92	-1	687718..687966	+	82	32266207	-	HH0708	-	component of Sec-independent protein secretion pathway TatA
709	 35.34	0	687966..689612	+	548	32266208	argS	HH0709	-	arginyl-tRNA synthetase
710	 36.93	0	689614..690309	+	231	32266209	-	HH0710	-	hypothetical protein
711	 33.04	0	690299..690640	+	113	32266210	-	HH0711	-	hypothetical protein
712	 34.34	0	690671..691168	-	165	32266211	fldA	HH0712	-	flavodoxin FldA
713	 35.81	0	691320..692126	-	268	32266212	yaeC	HH0713	-	hypothetical protein
714	 37.29	0	692177..693010	-	277	32266213	-	HH0714	-	hypothetical protein
715	 38.12	0	693034..693744	-	236	32266214	-	HH0715	-	hypothetical protein
716	 36.74	0	693755..694810	-	351	32266215	abc	HH0716	-	hypothetical protein
717	 35.65	0	694903..695679	-	258	32266216	-	HH0717	-	hypothetical protein
718	 39.07	0	695680..696813	-	377	32266217	-	HH0718	-	hypothetical protein
719	 39.62	+1	696880..698088	-	402	32266218	dapD	HH0719	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD
720	 29.75	-1	698313..698786	-	157	32266219	-	HH0720	-	hypothetical protein
721	 37.63	0	699209..701395	+	728	32266220	cfrA	HH0721	-	hypothetical protein
722	 38.12	0	701495..702934	+	479	32266221	aspA	HH0722	-	aspartate ammonia-lyase
723	 42.65	+1	703014..704441	+	475	32266222	dcuB	HH0723	-	anaerobic C4-dicarboxylate transporter
724	 17.14	-2	704468..704572	+	34	32266223	-	HH0724	-	hypothetical protein
725	 34.89	0	704613..706670	+	685	32266224	-	HH0725	-	hypothetical protein
726	 36.79	0	706756..707682	-	308	32266225	accA	HH0726	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
727	 41.02	+1	707695..708930	-	411	32266226	fabF	HH0727	-	3-oxoacyl-(acyl carrier protein) synthase II
728	 32.90	0	709006..709236	-	76	32266227	-	HH0728	-	acyl carrier protein
729	 31.22	-1	709267..709455	+	62	32266228	-	HH0729	-	hypothetical protein
730	 33.92	0	709452..710132	-	226	32266229	-	HH0730	-	hypothetical protein
731	 40.38	+1	710145..710300	-	51	32266230	-	HH0731	-	hypothetical protein
732	 38.31	0	710397..711140	-	247	32266231	fabG	HH0732	-	3-ketoacyl-(acyl-carrier-protein) reductase
733	 34.93	0	711191..713506	-	771	32266232	-	HH0733	-	hypothetical protein
734	 35.44	0	713503..718950	-	1815	32266233	-	HH0734	-	hypothetical protein
735	 37.83	0	719034..719945	-	303	32266234	sfhB	HH0735	-	hypothetical protein
736	 33.33	0	720685..722130	-	481	32266235	-	HH0736	-	hypothetical protein
737	 20.00	-2	722273..722392	+	39	32266236	-	HH0737	-	hypothetical protein
738	 35.99	0	722420..723247	+	275	32266237	-	HH0738	-	amino-acid ABC transporter periplasmic solute-binding protein
739	 37.15	0	723285..723782	-	165	32266238	msrA	HH0739	-	methionine sulfoxide reductase A
740	 37.64	0	723867..725237	+	456	32266239	selA	HH0740	-	selenocysteine synthase
741	 36.91	0	725248..727146	+	632	32266240	selB	HH0741	-	selenocysteine-specific elongation factor SelB
742	 36.78	0	727163..728266	+	367	32266241	-	HH0742	-	hypothetical protein
743	 38.50	0	728277..729515	+	412	32266242	moeA_2	HH0743	-	molybdopterin biosynthesis enzyme
744	 34.29	0	729543..729959	+	138	32266243	-	HH0744	-	hypothetical protein
745	 38.16	0	729969..731624	+	551	32266244	-	HH0745	-	hypothetical protein
746	 29.71	-1	731701..732141	+	146	32266245	-	HH0746	-	hypothetical protein
747	 31.58	-1	732226..732339	-	37	32266246	-	HH0747	-	hypothetical protein
748	 39.88	+1	732416..733102	-	228	32266247	-	HH0748	-	hypothetical protein
749	 37.57	0	733425..733613	+	62	32266248	-	HH0749	-	hypothetical protein
750	 42.17	+1	733628..735880	+	750	32266249	-	HH0750	-	hypothetical protein
751	 37.88	0	735939..736070	+	43	32266250	-	HH0751	-	hypothetical protein
752	 41.81	+1	736252..737124	+	290	32266251	-	HH0752	-	hypothetical protein
753	 35.52	0	737135..737317	+	60	32266252	-	HH0753	-	hypothetical protein
754	 40.62	+1	737308..737787	+	159	32266253	-	HH0754	-	hypothetical protein
755	 42.12	+1	737818..738204	+	128	32266254	-	HH0755	-	hypothetical protein
756	 38.10	0	738204..738455	+	83	32266255	-	HH0756	-	hypothetical protein
757	 33.33	0	738627..738857	+	76	32266256	-	HH0757	-	hypothetical protein
758	 28.37	-2	738850..739353	+	167	32266257	-	HH0758	-	hypothetical protein
759	 39.63	+1	739466..740005	-	179	32266258	-	HH0759	-	hypothetical protein
760	 41.42	+1	740016..741512	-	498	32266259	-	HH0760	-	hypothetical protein
761	 40.07	+1	741727..742557	-	276	32266260	-	HH0761	-	hypothetical protein
762	 35.88	0	742721..743074	+	117	32266261	-	HH0762	-	hypothetical protein
763	 42.86	+1	743058..743267	+	69	32266262	-	HH0763	-	hypothetical protein
764	 39.15	0	743264..743452	+	62	32266263	-	HH0764	-	hypothetical protein
765	 43.49	+2	743449..743763	+	104	32266264	-	HH0765	-	hypothetical protein
766	 32.38	0	743760..743864	+	34	32266265	-	HH0766	-	hypothetical protein
767	 38.80	0	743877..744443	+	188	32266266	-	HH0767	-	hypothetical protein
768	 42.06	+1	744506..745078	+	190	32266267	-	HH0768	-	hypothetical protein
769	 34.97	0	745179..745484	+	101	32266268	-	HH0769	-	hypothetical protein
770	 35.94	0	745547..745738	+	63	32266269	-	HH0770	-	hypothetical protein
771	 39.57	+1	745735..747402	+	555	32266270	-	HH0771	-	hypothetical protein
772	 39.40	+1	747418..748290	+	290	32266271	-	HH0772	-	hypothetical protein
773	 35.76	0	748506..750071	+	521	32266272	-	HH0773	-	hypothetical protein
774	 34.76	0	750112..751998	-	628	32266273	-	HH0774	-	hypothetical protein
775	 30.57	-1	751995..752681	-	228	32266274	-	HH0775	-	hypothetical protein
776	 35.75	0	752678..753421	-	247	32266275	yhcG	HH0776	-	ABC transporter
777	 34.27	0	753513..753725	-	70	32266276	rpsU	HH0777	-	30S ribosomal protein S21
778	 38.85	0	753962..755176	-	404	32266277	ftsZ	HH0778	-	cell division protein FtsZ
779	 37.42	0	755189..756559	-	456	32266278	ftsA	HH0779	-	cell division protein FtsA
780	 34.60	0	756567..758066	-	499	32266279	-	HH0780	-	hypothetical protein
781	 20.93	-2	758093..758221	-	42	32266280	-	HH0781	-	hypothetical protein
782	 32.81	0	758294..759436	-	380	32266281	ftsW_1	HH0782	-	cell division membrane protein FtsW/MrdB/SpoVE
783	 37.69	0	759497..760552	+	351	32266282	-	HH0783	-	ribosomal pseudouridine synthase
784	 36.65	0	760482..761747	+	421	32266283	-	HH0784	-	hypothetical protein
785	 34.17	0	761747..762937	+	396	32266284	trmB	HH0785	-	tRNA (guanine-N(7))-methyltransferase
786	 36.02	0	762941..763609	+	222	32266285	ftsE	HH0786	-	ABC transporter
787	 34.57	0	763596..764405	+	269	32266286	ftsX	HH0787	-	cell division protein FtsX
788	 32.70	0	764353..765624	+	423	32266287	-	HH0788	-	hypothetical protein
789	 32.82	0	765679..766071	+	130	32266288	flaG	HH0789	-	flagellar protein FlaG
790	 35.29	0	766121..768169	+	682	32266289	fliD	HH0790	-	flagellar capping protein
791	 35.16	0	768180..768563	+	127	32266290	fliS	HH0791	-	flagellar protein FliS
792	 38.46	0	768547..768780	+	77	32266291	-	HH0792	-	hypothetical protein
793	 34.72	0	768908..769195	+	95	32266292	-	HH0793	-	histone-like DNA-binding protein HU (HupB)
794	 39.42	+1	769221..770156	-	311	32266293	gpsA	HH0794	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
795	 34.36	0	770200..770880	-	226	32266294	-	HH0795	-	hypothetical protein
796	 40.98	+1	771081..772505	+	474	32266295	gatB	HH0796	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
797	 33.63	0	772873..775932	+	1019	32266296	-	HH0797	-	hypothetical protein
798	 32.26	0	775929..779099	+	1056	32266297	-	HH0798	-	hypothetical protein
799	 26.97	-2	779190..780509	+	439	32266298	-	HH0799	-	hypothetical protein
800	 29.43	-1	780641..781690	+	349	32266299	-	HH0800	-	hypothetical protein
801	 23.61	-2	782105..782248	+	47	32266300	-	HH0801	-	hypothetical protein
802	 36.67	0	782301..782450	+	49	32266301	-	HH0802	-	hypothetical protein
35.80	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.