IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
668	 37.57	0	646362..647729	+	455	32266167	-	HH0668	-	hypothetical protein
669	 39.42	+1	647729..648763	+	344	161546630	argC	HH0669	-	N-acetyl-gamma-glutamyl-phosphate reductase
670	 32.34	0	648773..649678	+	301	32266169	-	HH0670	-	hypothetical protein
671	 34.38	0	649679..650629	+	316	32266170	-	HH0671	-	chemotaxis signal transduction protein CheV
672	 39.74	+1	650672..653029	+	785	32266171	cheA	HH0672	-	chemotaxis protein histidine kinase CheA
673	 35.98	0	653031..653522	+	163	32266172	cheW	HH0673	-	chemotaxis signal transduction response regulator CheW
674	 38.65	0	653611..654438	-	275	32266173	-	HH0674	-	hypothetical protein
675	 36.19	0	655154..656587	+	477	32266174	-	HH0675	-	hypothetical protein
676	 33.33	0	656587..657765	+	392	32266175	-	HH0676	-	hypothetical protein
677	 38.41	0	657892..658305	+	137	32266176	ndk	HH0677	-	nucleoside diphosphate kinase
678	 34.46	0	658306..658659	+	117	32266177	-	HH0678	-	hypothetical protein
679	 38.67	0	658674..658823	+	49	32266178	rpmF	HH0679	-	50S ribosomal protein L32
680	 40.02	+1	658845..659846	+	333	32266179	plsX	HH0680	-	putative glycerol-3-phosphate acyltransferase PlsX
681	 38.64	0	659856..660854	+	332	32266180	fabH	HH0681	-	3-oxoacyl-(acyl carrier protein) synthase III
682	 37.08	0	660935..663178	+	747	32266181	-	HH0682	-	hypothetical protein
683	 35.68	0	663198..663410	+	70	32266182	-	HH0683	-	hypothetical protein
684	 35.02	0	663394..665109	+	571	32266183	msbA	HH0684	-	multidrug resistance protein MsbA
685	 38.39	0	665272..666042	+	256	32266184	frdC	HH0685	-	fumarate reductase cytochrome b-556 subunit
686	 41.88	+1	666043..668019	+	658	32266185	frdA	HH0686	-	fumarate reductase flavoprotein subunit
687	 40.32	+1	668019..668762	+	247	32266186	sdhB	HH0687	-	fumarate reductase iron-sulfur subunit
688	 34.48	0	668814..670376	+	520	32266187	-	HH0688	-	hypothetical protein
689	 37.44	0	670394..670783	-	129	32266188	-	HH0689	-	hypothetical protein
690	 34.30	0	670767..670973	-	68	32266189	-	HH0690	-	hypothetical protein
691	 37.36	0	670973..672337	-	454	32266190	glmU	HH0691	-	UDP-N-acetylglucosamine pyrophosphorylase
692	 38.47	0	672436..673233	+	265	32266191	fliP	HH0692	-	flagellar biosynthesis protein FliP
693	 35.88	0	673245..674459	+	404	32266192	trmA	HH0693	-	tRNA (uracil-5-)-methyltransferase
694	 37.00	0	674462..675634	-	390	32266193	-	HH0694	-	hypothetical protein
695	 31.93	-1	675663..676373	-	236	32266194	-	HH0695	-	hypothetical protein
696	 35.60	0	676571..677365	+	264	32266195	-	HH0696	-	hypothetical protein
697	 33.33	0	677368..678453	+	361	32266196	-	HH0697	-	hypothetical protein
698	 36.02	0	678422..678868	+	148	32266197	rnhA	HH0698	-	ribonuclease H
699	 33.75	0	678861..679583	+	240	32266198	rnc	HH0699	-	ribonuclease III
700	 40.67	+1	679580..680656	+	358	32266199	aroC	HH0700	-	chorismate synthase
701	 39.29	0	680733..682076	+	447	32266200	gatA	HH0701	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
702	 38.17	0	682096..683541	+	481	32266201	guaB	HH0702	-	inositol-5-monophosphate dehydrogenase
703	 32.13	-1	683552..683800	+	82	32266202	-	HH0703	-	hypothetical protein
704	 35.65	0	683806..684582	+	258	32266203	fliR	HH0704	-	flagellar biosynthesis protein FliR
705	 32.10	-1	684584..685150	-	188	32266204	-	HH0705	-	hypothetical protein
706	 35.98	0	685229..687043	+	604	32266205	-	HH0706	-	hypothetical protein
707	 35.66	0	687043..687645	+	200	32266206	gmk	HH0707	-	guanylate kinase
708	 30.92	-1	687718..687966	+	82	32266207	-	HH0708	-	component of Sec-independent protein secretion pathway TatA
709	 35.34	0	687966..689612	+	548	32266208	argS	HH0709	-	arginyl-tRNA synthetase
710	 36.93	0	689614..690309	+	231	32266209	-	HH0710	-	hypothetical protein
711	 33.04	0	690299..690640	+	113	32266210	-	HH0711	-	hypothetical protein
712	 34.34	0	690671..691168	-	165	32266211	fldA	HH0712	-	flavodoxin FldA
713	 35.81	0	691320..692126	-	268	32266212	yaeC	HH0713	-	hypothetical protein
714	 37.29	0	692177..693010	-	277	32266213	-	HH0714	-	hypothetical protein
715	 38.12	0	693034..693744	-	236	32266214	-	HH0715	-	hypothetical protein
716	 36.74	0	693755..694810	-	351	32266215	abc	HH0716	-	hypothetical protein
717	 35.65	0	694903..695679	-	258	32266216	-	HH0717	-	hypothetical protein
718	 39.07	0	695680..696813	-	377	32266217	-	HH0718	-	hypothetical protein
719	 39.62	+1	696880..698088	-	402	32266218	dapD	HH0719	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD
720	 29.75	-1	698313..698786	-	157	32266219	-	HH0720	-	hypothetical protein
721	 37.63	0	699209..701395	+	728	32266220	cfrA	HH0721	-	hypothetical protein
722	 38.12	0	701495..702934	+	479	32266221	aspA	HH0722	-	aspartate ammonia-lyase
723	 42.65	+1	703014..704441	+	475	32266222	dcuB	HH0723	-	anaerobic C4-dicarboxylate transporter
724	 17.14	-2	704468..704572	+	34	32266223	-	HH0724	-	hypothetical protein
725	 34.89	0	704613..706670	+	685	32266224	-	HH0725	-	hypothetical protein
726	 36.79	0	706756..707682	-	308	32266225	accA	HH0726	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
727	 41.02	+1	707695..708930	-	411	32266226	fabF	HH0727	-	3-oxoacyl-(acyl carrier protein) synthase II
728	 32.90	0	709006..709236	-	76	32266227	-	HH0728	-	acyl carrier protein
729	 31.22	-1	709267..709455	+	62	32266228	-	HH0729	-	hypothetical protein
730	 33.92	0	709452..710132	-	226	32266229	-	HH0730	-	hypothetical protein
731	 40.38	+1	710145..710300	-	51	32266230	-	HH0731	-	hypothetical protein
732	 38.31	0	710397..711140	-	247	32266231	fabG	HH0732	-	3-ketoacyl-(acyl-carrier-protein) reductase
733	 34.93	0	711191..713506	-	771	32266232	-	HH0733	-	hypothetical protein
734	 35.44	0	713503..718950	-	1815	32266233	-	HH0734	-	hypothetical protein
735	 37.83	0	719034..719945	-	303	32266234	sfhB	HH0735	-	hypothetical protein
736	 33.33	0	720685..722130	-	481	32266235	-	HH0736	-	hypothetical protein
737	 20.00	-2	722273..722392	+	39	32266236	-	HH0737	-	hypothetical protein
738	 35.99	0	722420..723247	+	275	32266237	-	HH0738	-	amino-acid ABC transporter periplasmic solute-binding protein
739	 37.15	0	723285..723782	-	165	32266238	msrA	HH0739	-	methionine sulfoxide reductase A
740	 37.64	0	723867..725237	+	456	32266239	selA	HH0740	-	selenocysteine synthase
741	 36.91	0	725248..727146	+	632	32266240	selB	HH0741	-	selenocysteine-specific elongation factor SelB
742	 36.78	0	727163..728266	+	367	32266241	-	HH0742	-	hypothetical protein
743	 38.50	0	728277..729515	+	412	32266242	moeA_2	HH0743	-	molybdopterin biosynthesis enzyme
744	 34.29	0	729543..729959	+	138	32266243	-	HH0744	-	hypothetical protein
745	 38.16	0	729969..731624	+	551	32266244	-	HH0745	-	hypothetical protein
746	 29.71	-1	731701..732141	+	146	32266245	-	HH0746	-	hypothetical protein
747	 31.58	-1	732226..732339	-	37	32266246	-	HH0747	-	hypothetical protein
748	 39.88	+1	732416..733102	-	228	32266247	-	HH0748	-	hypothetical protein
749	 37.57	0	733425..733613	+	62	32266248	-	HH0749	-	hypothetical protein
750	 42.17	+1	733628..735880	+	750	32266249	-	HH0750	-	hypothetical protein
751	 37.88	0	735939..736070	+	43	32266250	-	HH0751	-	hypothetical protein
752	 41.81	+1	736252..737124	+	290	32266251	-	HH0752	-	hypothetical protein
753	 35.52	0	737135..737317	+	60	32266252	-	HH0753	-	hypothetical protein
754	 40.62	+1	737308..737787	+	159	32266253	-	HH0754	-	hypothetical protein
755	 42.12	+1	737818..738204	+	128	32266254	-	HH0755	-	hypothetical protein
756	 38.10	0	738204..738455	+	83	32266255	-	HH0756	-	hypothetical protein
757	 33.33	0	738627..738857	+	76	32266256	-	HH0757	-	hypothetical protein
758	 28.37	-2	738850..739353	+	167	32266257	-	HH0758	-	hypothetical protein
759	 39.63	+1	739466..740005	-	179	32266258	-	HH0759	-	hypothetical protein
760	 41.42	+1	740016..741512	-	498	32266259	-	HH0760	-	hypothetical protein
761	 40.07	+1	741727..742557	-	276	32266260	-	HH0761	-	hypothetical protein
762	 35.88	0	742721..743074	+	117	32266261	-	HH0762	-	hypothetical protein
763	 42.86	+1	743058..743267	+	69	32266262	-	HH0763	-	hypothetical protein
764	 39.15	0	743264..743452	+	62	32266263	-	HH0764	-	hypothetical protein
765	 43.49	+2	743449..743763	+	104	32266264	-	HH0765	-	hypothetical protein
766	 32.38	0	743760..743864	+	34	32266265	-	HH0766	-	hypothetical protein
767	 38.80	0	743877..744443	+	188	32266266	-	HH0767	-	hypothetical protein
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.