IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
527	 37.67	0	507717..509261	+	514	32266026	thrC	HH0527	-	threonine synthase
528	 41.82	+1	509346..509840	+	164	32266027	purE	HH0528	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
529	 37.27	0	509850..510332	+	160	32266028	-	HH0529	-	hypothetical protein
530	 38.33	0	510329..511249	+	306	32266029	-	HH0530	-	hypothetical protein
531	 38.24	0	511258..512154	+	298	32266030	glyQ	HH0531	-	glycyl-tRNA synthetase subunit alpha
532	 38.54	0	512154..514208	+	684	32266031	-	HH0532	-	hypothetical protein
533	 36.97	0	514218..514904	+	228	32266032	-	HH0533	-	hypothetical protein
534	 37.18	0	515008..516852	+	614	32266033	-	HH0534	-	hypothetical protein
535	 32.74	0	517329..518339	+	336	32266034	-	HH0535	-	DNA polymerase III subunit delta
536	 35.99	0	518434..518847	+	137	32266035	rpsF	HH0536	-	30S ribosomal protein S6
537	 38.99	0	518865..519377	+	170	32266036	ssb	HH0537	-	single-strand DNA-binding protein
538	 37.25	0	519396..519650	+	84	161546631	rpsR	HH0538	-	30S ribosomal protein S18
539	 36.24	0	519753..521816	+	687	32266038	-	HH0539	-	hypothetical protein
540	 36.71	0	521952..522722	+	256	32266039	-	HH0540	-	hypothetical protein
541	 37.00	0	522724..522996	-	90	32266040	rpsO	HH0541	-	30S ribosomal protein S15
542	 32.65	0	523088..523234	-	48	32266041	-	HH0542	-	hypothetical protein
543	 35.90	0	523405..523560	-	51	32266042	-	HH0543	-	hypothetical protein
544	 32.44	0	523699..523923	-	74	32266043	-	HH0544	-	hypothetical protein
545	 35.58	0	523978..525849	-	623	32266044	rpoD	HH0545	-	RNA polymerase sigma factor RpoD
546	 39.87	+1	525972..526919	-	315	32266045	porB	HH0546	-	ferrodoxin oxidoreductase beta subunit
547	 42.26	+1	526930..528150	-	406	32266046	porA	HH0547	-	pyruvate flavodoxin oxidoreductase subunit alpha
548	 37.23	0	528162..528572	-	136	32266047	porD	HH0548	-	pyruvate flavodoxin oxidoreductase subunit delta
549	 38.15	0	528592..529152	-	186	32266048	porG	HH0549	-	pyruvate flavodoxin oxidoreductase subunit gamma
550	 35.29	0	529245..529805	-	186	32266049	-	HH0550	-	hypothetical protein
551	 33.33	0	529802..530215	-	137	32266050	-	HH0551	-	hypothetical protein
552	 34.09	0	530256..530387	-	43	32266051	-	HH0552	-	hypothetical protein
553	 28.55	-2	530406..531095	-	229	32266052	-	HH0553	-	hypothetical protein
554	 33.33	0	531320..531901	-	193	32266053	-	HH0554	-	hypothetical protein
555	 36.53	0	532007..533854	-	615	32266054	-	HH0555	-	hypothetical protein
556	 31.18	-1	533866..533958	-	30	32266055	-	HH0556	-	hypothetical protein
557	 38.18	0	534065..535198	+	377	32266056	-	HH0557	-	hypothetical protein
558	 38.94	0	535467..536465	+	332	32266057	trpS	HH0558	-	tryptophanyl-tRNA synthetase
559	 35.13	0	536462..537742	+	426	32266058	-	HH0559	-	hypothetical protein
560	 40.76	+1	537878..539317	+	479	32266059	glnA	HH0560	-	glutamine synthase
561	 38.33	0	539340..539819	-	159	32266060	-	HH0561	-	hypothetical protein
562	 35.16	0	540133..540405	+	90	32266061	-	HH0562	-	hypothetical protein
563	 39.76	+1	540429..541409	-	326	32266062	yurV	HH0563	-	NifU-like protein
564	 40.45	+1	541609..542775	-	388	32266063	nifS	HH0564	-	cysteine desulfurase
565	 39.29	0	542916..544292	-	458	32266064	fliI	HH0565	-	flagellum-specific ATP synthase
566	 31.90	-1	544365..545693	+	442	32266065	tig	HH0566	-	trigger factor
567	 35.53	0	545690..546280	+	196	32266066	clpP	HH0567	-	ATP-dependent Clp protease proteolytic subunit
568	 34.03	0	546302..547453	+	383	32266067	-	HH0568	-	hypothetical protein
569	 34.80	0	547401..547946	+	181	32266068	def	HH0569	-	peptide deformylase
570	 38.12	0	548037..549476	+	479	32266069	-	HH0570	-	competence protein ComM
571	 39.01	0	549501..549782	+	93	32266070	-	HH0571	-	hypothetical protein
572	 35.16	0	549792..550559	-	255	32266071	-	HH0572	-	hypothetical protein
573	 28.99	-1	550610..552220	-	536	32266072	-	HH0573	-	hypothetical protein
574	 36.88	0	552226..552846	-	206	32266073	-	HH0574	-	hypothetical protein
575	 35.49	0	552958..553560	-	200	32266074	-	HH0575	-	hypothetical protein
576	 39.34	0	553581..554846	-	421	32266075	murA	HH0576	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
577	 31.37	-1	554863..555270	-	135	32266076	-	HH0577	-	hypothetical protein
578	 36.25	0	555263..556015	-	250	32266077	galU	HH0578	-	UTP- glucose-1-phosphate uridylyltransferase
579	 37.84	0	555999..556109	+	36	32266078	-	HH0579	-	hypothetical protein
580	 32.47	0	556106..557734	-	542	32266079	-	HH0580	-	hypothetical protein
581	 37.33	0	557756..558055	-	99	32266080	-	HH0581	-	hypothetical protein
582	 34.46	0	558081..559406	-	441	32266081	gltX	HH0582	-	glutamyl-tRNA synthetase
583	 34.91	0	559406..559975	-	189	32266082	-	HH0583	-	hypothetical protein
584	 33.97	0	560485..560958	+	157	32266083	-	HH0584	-	hypothetical protein
585	 35.13	0	560961..562517	-	518	32266084	-	HH0585	-	hypothetical protein
586	 36.59	0	562622..564709	+	695	32266085	-	HH0586	-	cation transport ATPase
587	 40.67	+1	564791..566167	-	458	32266086	-	HH0587	-	phosphodiesterase
588	 33.76	0	566289..566993	-	234	32266087	-	HH0588	-	hypothetical protein
589	 34.06	0	566971..567660	+	229	32266088	-	HH0589	-	hypothetical protein
590	 36.51	0	567657..568538	+	293	32266089	ftsY	HH0590	-	signal recognition particle-docking GTPase FtsY
591	 39.20	0	568538..569884	+	448	32266090	-	HH0591	-	DNA repair protein RadA
592	 29.63	-1	570138..571514	+	458	32266091	-	HH0592	-	hypothetical protein
593	 39.74	+1	571785..572096	-	103	32266092	atpE	HH0593	-	F0F1 ATP synthase subunit C
594	 37.61	0	572204..574333	-	709	32266093	pnp	HH0594	-	polynucleotide phosphorylase/polyadenylase
595	 33.03	0	574333..574998	-	221	32266094	-	HH0595	-	hypothetical protein
596	 32.16	-1	575012..577144	-	710	32266095	-	HH0596	-	organic solvent tolerance protein
597	 35.02	0	577222..577695	-	157	32266096	-	HH0597	-	hypothetical protein
598	 39.73	+1	577692..578972	-	426	32266097	purD	HH0598	-	phosphoribosylamine--glycine ligase
599	 36.38	0	579218..579973	-	251	32266098	-	HH0599	-	hypothetical protein
600	 36.27	0	580066..580167	+	33	32266099	-	HH0600	-	hypothetical protein
601	 37.48	0	580219..580965	-	248	32266100	truA	HH0601	-	tRNA pseudouridine synthase A
602	 33.92	0	580965..581984	-	339	32266101	-	HH0602	-	hypothetical protein
603	 31.17	-1	581984..582631	-	215	32266102	hopD	HH0603	-	type IV prepilin peptidase HopD
604	 39.12	0	582647..583303	-	218	32266103	pcm	HH0604	-	protein-L-isoaspartate O-methyltransferase
605	 33.47	0	583303..584040	-	245	32266104	-	HH0605	-	hypothetical protein
606	 34.57	0	584030..585079	-	349	32266105	nrdF	HH0606	-	ribonucleotide-diphosphate reductase subunit beta
607	 46.94	+2	585188..585334	-	48	32266106	-	HH0607	-	hypothetical protein
608	 37.88	0	585378..587267	-	629	32266107	dxs	HH0608	-	1-deoxy-D-xylulose-5-phosphate synthase
609	 34.77	0	587293..588126	-	277	32266108	fliH	HH0609	-	flagellar assembly protein H
610	 37.50	0	588113..589144	-	343	32266109	fliG	HH0610	-	flagellar motor switch protein G
611	 36.43	0	589160..590872	-	570	32266110	fliF	HH0611	-	flagellar MS-ring protein
612	 35.94	0	590882..591994	-	370	32266111	hisC	HH0612	-	histidinol-phosphate aminotransferase
613	 36.92	0	592187..593635	+	482	32266112	glmM_1	HH0613	-	phosphohexosemutase
614	 40.21	+1	593645..594676	+	343	32266113	pyrC_2	HH0614	-	dihydroorotase
615	 33.15	0	594693..595808	-	371	32266114	hemN_2	HH0615	-	coproporphyrinogen III oxidase
616	 26.13	-2	595846..595956	+	36	32266115	-	HH0616	-	hypothetical protein
617	 32.87	0	595982..596416	+	144	32266116	-	HH0617	-	dinucleoside polyphosphate hydrolase
618	 38.14	0	596478..597683	+	401	32266117	lysC	HH0618	-	aspartate kinase
619	 31.22	-1	597631..598245	+	204	32266118	-	HH0619	-	hypothetical protein
620	 33.49	0	598268..598888	+	206	32266119	holB	HH0620	-	DNA polymerase III subunit delta'
621	 35.90	0	598966..600015	+	349	32266120	folP	HH0621	-	dihydropteroate synthase
622	 30.60	-1	600012..600998	+	328	32266121	-	HH0622	-	hypothetical protein
623	 35.86	0	601070..602374	+	434	32266122	-	HH0623	-	hypothetical protein
624	 36.00	0	602371..603456	+	361	32266123	-	HH0624	-	hypothetical protein
625	 38.91	0	603456..606521	+	1021	32266124	-	HH0625	-	hypothetical protein
626	 32.61	0	606522..607490	-	322	32266125	-	HH0626	-	hypothetical protein
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.