IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
450	 38.71	0	428134..429231	-	365	32265949	-	HH0450	-	hypothetical protein
451	 39.23	0	429233..430165	-	310	32265950	ilvE	HH0451	-	branched-chain amino acid aminotransferase
452	 31.36	-1	430298..431770	-	490	32265951	-	HH0452	-	hypothetical protein
453	 35.56	0	432151..434976	+	941	32265952	ftsK	HH0453	-	DNA segregation ATPase FtsK/SpoIIIE
454	 37.24	0	435032..436465	+	477	32265953	htrA	HH0454	-	serine protease
455	 30.59	-1	436487..437323	+	278	32265954	cheR	HH0455	-	chemotaxis protein methyltransferase CheR
456	 38.80	0	437327..438040	+	237	32265955	cheB	HH0456	-	chemotaxis protein methylesterase CheB
457	 31.73	-1	438246..438494	-	82	32265956	-	HH0457	-	hypothetical protein
458	 35.53	0	438504..441509	-	1001	32265957	mfd	HH0458	-	transcription-repair coupling factor
459	 38.57	0	441536..441955	-	139	32265958	-	HH0459	-	hypothetical protein
460	 34.33	0	441913..442812	-	299	32265959	-	HH0460	-	membrane proteins related to metalloendopeptidase
461	 34.47	0	442816..443691	-	291	32265960	tagE	HH0461	-	hypothetical protein
462	 36.72	0	443692..444900	-	402	32265961	folC	HH0462	-	folylpolyglutamate synthase
463	 32.46	0	444897..445931	-	344	32265962	-	HH0463	-	hypothetical protein
464	 31.58	-1	445906..446418	-	170	32265963	-	HH0464	-	hypothetical protein
465	 37.51	0	446418..448910	-	830	32265964	leuS	HH0465	-	leucyl-tRNA synthetase
466	 34.70	0	449135..450376	+	413	32265965	alr	HH0466	-	alanine racemase
467	 38.09	0	450486..452693	+	735	32265966	flhA	HH0467	-	flagellar biosynthesis protein FlhA
468	 33.87	0	452702..453829	+	375	32265967	-	HH0468	-	hypothetical protein
469	 33.33	0	453826..454095	+	89	32265968	-	HH0469	-	hypothetical protein
470	 35.24	0	454156..454731	+	191	32265969	purN	HH0470	-	GAR transformylase PurN
471	 35.86	0	454728..455912	+	394	32265970	kefB_1	HH0471	-	hypothetical protein
472	 38.56	0	455912..457309	+	465	32265971	-	HH0472	-	SNF family sodium-dependent transporter
473	 38.68	0	457376..459151	+	591	32265972	-	HH0473	-	periplasmic binding component of ABC-type transport system
474	 35.10	0	459280..461037	+	585	32265973	-	HH0474	-	ATPase
475	 30.77	-1	461338..461649	+	103	32265974	-	HH0475	-	hypothetical protein
476	 29.84	-1	461646..462074	+	142	32265975	-	HH0476	-	hypothetical protein
477	 25.69	-2	462353..462679	+	108	32265976	-	HH0477	-	hypothetical protein
478	 29.43	-1	462752..463801	+	349	32265977	-	HH0478	-	ATPase
479	 23.61	-2	464216..464359	+	47	32265978	-	HH0479	-	hypothetical protein
480	 33.33	0	464383..464481	+	32	32265979	-	HH0480	-	hypothetical protein
481	 35.92	0	464452..466539	-	695	32265980	-	HH0481	-	hypothetical protein
482	 34.37	0	466710..467774	+	354	32265981	-	HH0482	-	ATPase
483	 38.88	0	467785..469155	-	456	32265982	purH	HH0483	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
484	 36.86	0	469382..470260	+	292	32265983	-	HH0484	-	hypothetical protein
485	 37.31	0	470499..471152	+	217	32265984	hisH	HH0485	-	glutamine amidotransferase HisH
486	 39.64	+1	471235..472170	+	311	32265985	trxB_1	HH0486	-	thioredoxin reductase TrxB
487	 39.19	0	472213..472980	+	255	32265986	dapB	HH0487	-	dihydrodipicolinate reductase
488	 38.95	0	473048..474472	+	474	32265987	purF	HH0488	-	amidophosphoribosyltransferase
489	 37.28	0	474482..475444	+	320	32265988	-	HH0489	-	hypothetical protein
490	 34.84	0	475476..476339	-	287	32265989	-	HH0490	-	hypothetical protein
491	 37.01	0	476357..477607	-	416	32265990	pgi	HH0491	-	glucose-6-phosphate isomerase
492	 38.72	0	477614..478597	-	327	32265991	gap_2	HH0492	-	glyceraldehyde-3-phosphate dehydrogenase
493	 36.11	0	478612..478719	-	35	32265992	-	HH0493	-	hypothetical protein
494	 34.33	0	478824..479723	-	299	32265993	-	HH0494	-	hypothetical protein
495	 36.29	0	479804..481897	-	697	32265994	ppk	HH0495	-	polyphosphate kinase
496	 33.92	0	482101..482613	+	170	32265995	-	HH0496	-	hypothetical protein
497	 37.62	0	482701..484545	+	614	32265996	yigC	HH0497	-	hypothetical protein
498	 38.69	0	484628..485056	+	142	32265997	rplM	HH0498	-	50S ribosomal protein L13
499	 40.77	+1	485065..485454	+	129	32265998	rpsI	HH0499	-	30S ribosomal protein S9
500	 39.51	+1	485552..486085	+	177	32265999	ycbL	HH0500	-	hydrolase
501	 43.32	+2	486136..486906	+	256	32266000	motA	HH0501	-	flagellar motor protein MotA
502	 38.76	0	486926..487681	+	251	32266001	motB	HH0502	-	flagellar motor protein MotB
503	 41.46	+1	487742..487864	+	40	32266002	-	HH0503	-	hypothetical protein
504	 27.85	-2	487930..488166	+	78	32266003	-	HH0504	-	hypothetical protein
505	 30.95	-1	488422..488631	+	69	32266004	-	HH0505	-	hypothetical protein
506	 40.95	+1	488672..489682	-	336	32266005	ruvB	HH0506	-	Holliday junction DNA helicase B
507	 39.50	+1	489763..490557	-	264	32266006	panB	HH0507	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
508	 34.27	0	490584..490904	-	106	32266007	-	HH0508	-	efflux protein
509	 36.13	0	490905..491261	-	118	32266008	-	HH0509	-	efflux protein
510	 35.04	0	491258..492136	-	292	32266009	lgt	HH0510	-	prolipoprotein diacylglyceryl transferase
511	 32.09	-1	492139..492459	-	106	32266010	-	HH0511	-	hypothetical protein
512	 32.29	0	492519..492995	-	158	32266011	-	HH0512	-	hypothetical protein
513	 34.58	0	493011..494609	-	532	32266012	-	HH0513	-	hypothetical protein
514	 34.52	0	494637..495227	-	196	32266013	ruvA	HH0514	-	Holliday junction DNA helicase motor protein
515	 35.27	0	495283..497139	-	618	32266014	-	HH0515	-	hypothetical protein
516	 36.59	0	497317..498699	+	460	32266015	-	HH0516	-	hypothetical protein
517	 35.58	0	498696..500162	+	488	32266016	cysS	HH0517	-	cysteinyl-tRNA synthetase
518	 34.61	0	500164..501024	-	286	32266017	ribF	HH0518	-	bifunctional riboflavin kinase/FMN adenylyltransferase
519	 38.71	0	500993..501718	-	241	32266018	-	HH0519	-	hypothetical protein
520	 30.62	-1	501727..502242	-	171	32266019	-	HH0520	-	hypothetical protein
521	 39.60	+1	502410..503303	+	297	32266020	pyrB	HH0521	-	aspartate carbamoyltransferase catalytic subunit
522	 39.66	+1	503427..504737	+	436	32266021	-	HH0522	-	hypothetical protein
523	 39.18	0	504844..505698	+	284	32266022	cdsA	HH0523	-	CDP-diglyceride synthetase CdsA
524	 38.11	0	505702..506811	+	369	32266023	dxr	HH0524	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
525	 38.50	0	506966..507604	+	212	32266024	-	HH0525	-	hypothetical protein
526	 31.25	-1	507605..507700	+	31	32266025	-	HH0526	-	hypothetical protein
527	 37.67	0	507717..509261	+	514	32266026	thrC	HH0527	-	threonine synthase
528	 41.82	+1	509346..509840	+	164	32266027	purE	HH0528	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
529	 37.27	0	509850..510332	+	160	32266028	-	HH0529	-	hypothetical protein
530	 38.33	0	510329..511249	+	306	32266029	-	HH0530	-	hypothetical protein
531	 38.24	0	511258..512154	+	298	32266030	glyQ	HH0531	-	glycyl-tRNA synthetase subunit alpha
532	 38.54	0	512154..514208	+	684	32266031	-	HH0532	-	hypothetical protein
533	 36.97	0	514218..514904	+	228	32266032	-	HH0533	-	hypothetical protein
534	 37.18	0	515008..516852	+	614	32266033	-	HH0534	-	hypothetical protein
535	 32.74	0	517329..518339	+	336	32266034	-	HH0535	-	DNA polymerase III subunit delta
536	 35.99	0	518434..518847	+	137	32266035	rpsF	HH0536	-	30S ribosomal protein S6
537	 38.99	0	518865..519377	+	170	32266036	ssb	HH0537	-	single-strand DNA-binding protein
538	 37.25	0	519396..519650	+	84	161546631	rpsR	HH0538	-	30S ribosomal protein S18
539	 36.24	0	519753..521816	+	687	32266038	-	HH0539	-	hypothetical protein
540	 36.71	0	521952..522722	+	256	32266039	-	HH0540	-	hypothetical protein
541	 37.00	0	522724..522996	-	90	32266040	rpsO	HH0541	-	30S ribosomal protein S15
542	 32.65	0	523088..523234	-	48	32266041	-	HH0542	-	hypothetical protein
543	 35.90	0	523405..523560	-	51	32266042	-	HH0543	-	hypothetical protein
544	 32.44	0	523699..523923	-	74	32266043	-	HH0544	-	hypothetical protein
545	 35.58	0	523978..525849	-	623	32266044	rpoD	HH0545	-	RNA polymerase sigma factor RpoD
546	 39.87	+1	525972..526919	-	315	32266045	porB	HH0546	-	ferrodoxin oxidoreductase beta subunit
547	 42.26	+1	526930..528150	-	406	32266046	porA	HH0547	-	pyruvate flavodoxin oxidoreductase subunit alpha
548	 37.23	0	528162..528572	-	136	32266047	porD	HH0548	-	pyruvate flavodoxin oxidoreductase subunit delta
549	 38.15	0	528592..529152	-	186	32266048	porG	HH0549	-	pyruvate flavodoxin oxidoreductase subunit gamma
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.