IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
355	 32.92	0	343003..343731	+	242	32265854	-	HH0355	-	TonB-like protein
356	 35.77	0	343753..344163	-	136	32265855	-	HH0356	-	hypothetical protein
357	 37.15	0	344219..344506	-	95	32265856	-	HH0357	-	hypothetical protein
358	 39.15	0	344510..346588	-	692	32265857	fusA	HH0358	-	elongation factor G
359	 37.82	0	346604..347071	-	155	32265858	rpsG	HH0359	-	30S ribosomal protein S7
360	 40.77	+1	347087..347476	-	129	32265859	rpsL	HH0360	-	30S ribosomal protein S12
361	 37.55	0	347568..356252	-	2894	32265860	rpoB	HH0361	-	DNA-directed RNA polymerase subunit beta/beta'
362	 41.21	+1	356400..356780	-	126	32265861	rplL	HH0362	-	50S ribosomal protein L7/L12
363	 34.78	0	356801..357283	-	160	32265862	rplJ	HH0363	-	50S ribosomal protein L10
364	 38.87	0	357374..358078	-	234	32265863	rplA	HH0364	-	50S ribosomal protein L1
365	 36.62	0	358095..358520	-	141	32265864	rplK	HH0365	-	50S ribosomal protein L11
366	 35.47	0	358550..359065	-	171	32265865	nusG	HH0366	-	transcription antitermination protein NusG
367	 27.32	-2	359086..359268	-	60	32265866	secE	HH0367	-	preprotein translocase subunit SecE
368	 34.50	0	359396..359566	-	56	32265867	rpmG	HH0368	-	50S ribosomal protein L33
369	 40.08	+1	359581..360780	-	399	32265868	tuf	HH0369	-	elongation factor Tu
370	 29.65	-1	361949..362437	+	162	32265869	-	HH0370	-	hypothetical protein
371	 28.07	-2	362976..363089	+	37	32265870	-	HH0371	-	hypothetical protein
372	 39.12	0	363192..364349	+	385	32265871	-	HH0372	-	hypothetical protein
373	 37.58	0	364346..365665	+	439	32265872	murC	HH0373	-	UDP-N-acetylmuramate--L-alanine ligase
374	 33.55	0	365665..366117	+	150	32265873	-	HH0374	-	hypothetical protein
375	 36.80	0	366104..368326	+	740	32265874	mutS	HH0375	-	recombination and DNA strand exchange inhibitor protein
376	 35.08	0	368393..369136	+	247	32265875	-	HH0376	-	hypothetical protein
377	 31.29	-1	369136..369429	+	97	32265876	-	HH0377	-	hypothetical protein
378	 40.13	+1	369445..369915	-	156	32265877	-	HH0378	-	rRNA methylase (SpoU class)
379	 38.98	0	370065..371639	+	524	32265878	dcuA	HH0379	-	anaerobic C4-dicarboxylate transporter
380	 37.09	0	371691..372728	+	345	32265879	galE	HH0380	-	UDP-glucose 4-epimerase
381	 29.25	-1	372745..373503	+	252	32265880	-	HH0381	-	hypothetical protein
382	 33.33	0	373514..374521	+	335	32265881	-	HH0382	-	hypothetical protein
383	 35.44	0	374548..375921	+	457	32265882	-	HH0383	-	hypothetical protein
384	 32.39	0	376094..376621	+	175	32265883	-	HH0384	-	hypothetical protein
385	 32.97	0	376621..377163	+	180	32265884	-	HH0385	-	hypothetical protein
386	 35.80	0	377153..377800	+	215	32265885	-	HH0386	-	hypothetical protein
387	 30.85	-1	377800..378363	+	187	32265886	-	HH0387	-	hypothetical protein
388	 32.28	0	378353..378733	+	126	32265887	-	HH0388	-	hypothetical protein
389	 27.40	-2	378733..379086	+	117	32265888	-	HH0389	-	hypothetical protein
390	 32.05	-1	379101..379646	+	181	32265889	-	HH0390	-	hypothetical protein
391	 27.66	-2	379627..380208	+	193	32265890	-	HH0391	-	hypothetical protein
392	 34.79	0	380201..380680	+	159	32265891	-	HH0392	-	hypothetical protein
393	 28.08	-2	380691..381185	+	164	32265892	-	HH0393	-	hypothetical protein
394	 33.61	0	381160..381522	+	120	32265893	-	HH0394	-	hypothetical protein
395	 36.60	0	381504..382451	-	315	32265894	-	HH0395	-	hypothetical protein
396	 41.22	+1	382630..384531	+	633	32265895	acoE	HH0396	-	acetyl-CoA synthetase
397	 39.38	+1	384535..385410	+	291	32265896	prpB	HH0397	-	2-methylisocitrate lyase
398	 38.90	0	385421..386569	+	382	32265897	prpC	HH0398	-	citrate synthase PrpC
399	 41.98	+1	386603..388060	+	485	32265898	prpD	HH0399	-	2-methylcitrate dehydratase
400	 30.23	-1	388108..388623	+	171	32265899	-	HH0400	-	hypothetical protein
401	 26.55	-2	388738..389253	-	171	32265900	-	HH0401	-	hypothetical protein
402	 30.77	-1	389536..389691	-	51	32265901	-	HH0402	-	hypothetical protein
403	 28.91	-1	389688..390569	-	293	32265902	-	HH0403	-	hypothetical protein
404	 31.39	-1	390631..390990	-	119	32265903	-	HH0404	-	hypothetical protein
405	 32.12	-1	391029..391439	-	136	32265904	-	HH0405	-	hypothetical protein
406	 23.98	-2	391621..391866	+	81	32265905	-	HH0406	-	hypothetical protein
407	 36.58	0	391929..392606	+	225	32265906	ureA	HH0407	-	bifunctional urease subunit gamma/beta
408	 38.65	0	392628..394337	+	569	32265907	ureC	HH0408	-	urease subunit alpha
409	 36.45	0	394347..394859	+	170	32265908	ureI	HH0409	-	urease accessory protein UreI
410	 33.71	0	394859..395383	+	174	161546633	ureE	HH0410	-	urease accessory protein UreE
411	 33.03	0	395380..396042	+	220	32265910	ureF	HH0411	-	urease accessory protein UreF
412	 38.14	0	396053..396655	+	200	32265911	ureG	HH0412	-	urease/hydrogenase-associated GTPase UreG
413	 32.31	0	396730..397410	+	226	32265912	ureH	HH0413	-	urease accessory protein UreH
414	 35.57	0	397413..398126	-	237	32265913	nikE	HH0414	-	nickel transport ATP-binding protein NikE
415	 37.41	0	398120..399787	-	555	32265914	nikD	HH0415	-	nickel transport permease component NikD
416	 36.57	0	399784..400680	-	298	32265915	nikB	HH0416	-	nickel transport system permease protein NikB
417	 36.91	0	400797..402362	-	521	32265916	nikA	HH0417	-	nickel transport system periplasmic component NikA
418	 35.26	0	402505..404679	+	724	32265917	-	HH0418	-	hypothetical protein
419	 37.36	0	404743..405537	+	264	32265918	proB	HH0419	-	gamma-glutamyl kinase
420	 36.70	0	405498..406448	+	316	32265919	fmt	HH0420	-	methionyl-tRNA formyltransferase
421	 33.19	0	406464..407183	+	239	32265920	birA	HH0421	-	biotin--protein ligase
422	 35.11	0	407194..407979	+	261	32265921	parA	HH0422	-	ATPase involved in chromosome partitioning ParA
423	 34.48	0	407985..408857	+	290	32265922	parB	HH0423	-	transcriptional regulator involved in chromosome partitioning ParB
424	 31.22	-1	408934..409359	+	141	32265923	atpF	HH0424	-	F0F1 ATP synthase subunit B'
425	 29.84	-1	409369..409884	+	171	32265924	atpF'	HH0425	-	F0F1 ATP synthase subunit B
426	 33.33	0	409884..410408	+	174	32265925	atpH	HH0426	-	F0F1 ATP synthase subunit delta
427	 38.09	0	410430..411944	+	504	32265926	atpA	HH0427	-	F0F1 ATP synthase subunit alpha
428	 36.24	0	411957..412850	+	297	32265927	atpG	HH0428	-	F0F1 ATP synthase subunit gamma
429	 38.62	0	412869..414269	+	466	32265928	atpD	HH0429	-	F0F1 ATP synthase subunit beta
430	 37.12	0	414278..414673	+	131	32265929	atpC	HH0430	-	F0F1 ATP synthase subunit epsilon
431	 33.87	0	414683..415246	+	187	32265930	-	HH0431	-	biopolymer transport protein
432	 32.83	0	415254..415649	+	131	32265931	-	HH0432	-	biopolymer transport protein ExbD-like
433	 31.75	-1	415651..416343	+	230	32265932	-	HH0433	-	hypothetical protein
434	 34.60	0	416353..417612	+	419	32265933	tolB	HH0434	-	translocation protein TolB
435	 40.04	+1	417669..418130	+	153	32265934	-	HH0435	-	hypothetical protein
436	 31.32	-1	418154..418999	+	281	32265935	-	HH0436	-	hypothetical protein
437	 44.50	+2	418996..419550	+	184	32265936	slyD	HH0437	-	FKBP-type peptidyl-prolyl cis-trans isomerase 2
438	 34.83	0	419734..420000	+	88	32265937	fliQ	HH0438	-	flagellar biosynthesis protein FliQ
439	 38.76	0	420004..420795	+	263	32265938	murB	HH0439	-	UDP-N-acetylenolpyruvoylglucosamine reductase
440	 36.34	0	421336..421734	+	132	32265939	secG	HH0440	-	preprotein translocase subunit SecG
441	 36.02	0	421749..422306	+	185	32265940	frr	HH0441	-	ribosome recycling factor
442	 37.69	0	422309..424123	+	604	32265941	thrS	HH0442	-	threonyl-tRNA synthetase
443	 36.57	0	424120..424644	+	174	32265942	infC	HH0443	-	translation initiation factor IF-3
444	 33.33	0	424667..424861	+	64	161546632	rpmI	HH0444	-	50S ribosomal protein L35
445	 37.29	0	424944..425297	+	117	32265944	rplT	HH0445	-	50S ribosomal protein L20
446	 34.80	0	425458..426615	+	385	32265945	-	HH0446	-	hypothetical protein
447	 35.14	0	426584..427249	-	221	32265946	-	HH0447	-	hypothetical protein
448	 31.03	-1	427246..427419	-	57	32265947	-	HH0448	-	hypothetical protein
449	 36.35	0	427434..428129	-	231	32265948	hisI	HH0449	-	phosphoribosyl-AMP cyclohydrolase/ phosphoribosyl-ATP pyrophosphohydrolase
450	 38.71	0	428134..429231	-	365	32265949	-	HH0450	-	hypothetical protein
451	 39.23	0	429233..430165	-	310	32265950	ilvE	HH0451	-	branched-chain amino acid aminotransferase
452	 31.36	-1	430298..431770	-	490	32265951	-	HH0452	-	hypothetical protein
453	 35.56	0	432151..434976	+	941	32265952	ftsK	HH0453	-	DNA segregation ATPase FtsK/SpoIIIE
454	 37.24	0	435032..436465	+	477	32265953	htrA	HH0454	-	serine protease
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.