IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
321	 36.90	0	317822..319504	-	560	32265820	-	HH0321	-	hypothetical protein
322	 38.93	0	319508..320650	-	380	32265821	hypD	HH0322	-	hydrogenase isoenzyme formation protein
323	 37.08	0	320643..321362	-	239	32265822	-	HH0323	-	hypothetical protein
324	 37.55	0	321410..321670	-	86	32265823	hypC	HH0324	-	hydrogenase isoenzyme formation protein HypC
325	 37.31	0	321680..322408	-	242	32265824	hypB	HH0325	-	hydrogenase expression/formation protein HypB
326	 37.95	0	322389..324812	-	807	32265825	hypF	HH0326	-	transcriptional regulatory protein HypF
327	 39.95	+1	324933..326141	+	402	32265826	pgk	HH0327	-	phosphoglycerate kinase
328	 38.31	0	326141..326944	+	267	32265827	-	HH0328	-	hypothetical protein
329	 31.73	-1	327008..327319	+	103	32265828	-	HH0329	-	hypothetical protein
330	 28.86	-1	327409..327855	+	148	32265829	-	HH0330	-	hypothetical protein
331	 30.41	-1	327821..328333	+	170	32265830	panD	HH0331	-	aspartate alpha-decarboxylase
332	 38.23	0	328336..328662	+	108	32265831	ybaB	HH0332	-	hypothetical protein
333	 35.86	0	328655..329722	+	355	32265832	-	HH0333	-	hypothetical protein
334	 36.56	0	329731..330597	+	288	32265833	ispA	HH0334	-	geranyltranstransferase
335	 40.63	+1	330594..331388	+	264	32265834	surE	HH0335	-	stationary phase survival protein SurE
336	 34.90	0	331367..332068	+	233	32265835	-	HH0336	-	hypothetical protein
337	 32.59	0	332069..332203	+	44	32265836	-	HH0337	-	hypothetical protein
338	 38.83	0	332213..333103	+	296	32265837	-	HH0338	-	hypothetical protein
339	 39.73	+1	333211..333648	+	145	32265838	-	HH0339	-	hypothetical protein
340	 37.07	0	333898..335715	+	605	32265839	-	HH0340	-	hypothetical protein
341	 35.98	0	335719..336285	-	188	32265840	-	HH0341	-	hypothetical protein
342	 30.73	-1	336269..336652	-	127	32265841	-	HH0342	-	hypothetical protein
343	 30.30	-1	336655..336819	-	54	32265842	-	HH0343	-	hypothetical protein
344	 30.48	-1	336719..336928	+	69	32265843	-	HH0344	-	hypothetical protein
345	 37.58	0	336946..337605	+	219	32265844	glnP	HH0345	-	glutamine ABC transporter permease GlnP
346	 38.75	0	337653..338261	+	202	32265845	-	HH0346	-	hypothetical protein
347	 38.51	0	338258..339010	+	250	32265846	glnQ_1	HH0347	-	hypothetical protein
348	 35.25	0	339007..339528	-	173	32265847	-	HH0348	-	hypothetical protein
349	 34.56	0	339643..340623	-	326	32265848	-	HH0349	-	hypothetical protein
350	 30.99	-1	340626..340967	-	113	32265849	-	HH0350	-	hypothetical protein
351	 36.23	0	340997..341653	-	218	32265850	-	HH0351	-	hypothetical protein
352	 38.43	0	341634..342065	-	143	32265851	-	HH0352	-	nickel responsive regulator
353	 33.56	0	342217..342654	+	145	32265852	-	HH0353	-	biopolymer transport protein
354	 31.23	-1	342657..343037	+	126	32265853	-	HH0354	-	biopolymer transport protein
355	 32.92	0	343003..343731	+	242	32265854	-	HH0355	-	TonB-like protein
356	 35.77	0	343753..344163	-	136	32265855	-	HH0356	-	hypothetical protein
357	 37.15	0	344219..344506	-	95	32265856	-	HH0357	-	hypothetical protein
358	 39.15	0	344510..346588	-	692	32265857	fusA	HH0358	-	elongation factor G
359	 37.82	0	346604..347071	-	155	32265858	rpsG	HH0359	-	30S ribosomal protein S7
360	 40.77	+1	347087..347476	-	129	32265859	rpsL	HH0360	-	30S ribosomal protein S12
361	 37.55	0	347568..356252	-	2894	32265860	rpoB	HH0361	-	DNA-directed RNA polymerase subunit beta/beta'
362	 41.21	+1	356400..356780	-	126	32265861	rplL	HH0362	-	50S ribosomal protein L7/L12
363	 34.78	0	356801..357283	-	160	32265862	rplJ	HH0363	-	50S ribosomal protein L10
364	 38.87	0	357374..358078	-	234	32265863	rplA	HH0364	-	50S ribosomal protein L1
365	 36.62	0	358095..358520	-	141	32265864	rplK	HH0365	-	50S ribosomal protein L11
366	 35.47	0	358550..359065	-	171	32265865	nusG	HH0366	-	transcription antitermination protein NusG
367	 27.32	-2	359086..359268	-	60	32265866	secE	HH0367	-	preprotein translocase subunit SecE
368	 34.50	0	359396..359566	-	56	32265867	rpmG	HH0368	-	50S ribosomal protein L33
369	 40.08	+1	359581..360780	-	399	32265868	tuf	HH0369	-	elongation factor Tu
370	 29.65	-1	361949..362437	+	162	32265869	-	HH0370	-	hypothetical protein
371	 28.07	-2	362976..363089	+	37	32265870	-	HH0371	-	hypothetical protein
372	 39.12	0	363192..364349	+	385	32265871	-	HH0372	-	hypothetical protein
373	 37.58	0	364346..365665	+	439	32265872	murC	HH0373	-	UDP-N-acetylmuramate--L-alanine ligase
374	 33.55	0	365665..366117	+	150	32265873	-	HH0374	-	hypothetical protein
375	 36.80	0	366104..368326	+	740	32265874	mutS	HH0375	-	recombination and DNA strand exchange inhibitor protein
376	 35.08	0	368393..369136	+	247	32265875	-	HH0376	-	hypothetical protein
377	 31.29	-1	369136..369429	+	97	32265876	-	HH0377	-	hypothetical protein
378	 40.13	+1	369445..369915	-	156	32265877	-	HH0378	-	rRNA methylase (SpoU class)
379	 38.98	0	370065..371639	+	524	32265878	dcuA	HH0379	-	anaerobic C4-dicarboxylate transporter
380	 37.09	0	371691..372728	+	345	32265879	galE	HH0380	-	UDP-glucose 4-epimerase
381	 29.25	-1	372745..373503	+	252	32265880	-	HH0381	-	hypothetical protein
382	 33.33	0	373514..374521	+	335	32265881	-	HH0382	-	hypothetical protein
383	 35.44	0	374548..375921	+	457	32265882	-	HH0383	-	hypothetical protein
384	 32.39	0	376094..376621	+	175	32265883	-	HH0384	-	hypothetical protein
385	 32.97	0	376621..377163	+	180	32265884	-	HH0385	-	hypothetical protein
386	 35.80	0	377153..377800	+	215	32265885	-	HH0386	-	hypothetical protein
387	 30.85	-1	377800..378363	+	187	32265886	-	HH0387	-	hypothetical protein
388	 32.28	0	378353..378733	+	126	32265887	-	HH0388	-	hypothetical protein
389	 27.40	-2	378733..379086	+	117	32265888	-	HH0389	-	hypothetical protein
390	 32.05	-1	379101..379646	+	181	32265889	-	HH0390	-	hypothetical protein
391	 27.66	-2	379627..380208	+	193	32265890	-	HH0391	-	hypothetical protein
392	 34.79	0	380201..380680	+	159	32265891	-	HH0392	-	hypothetical protein
393	 28.08	-2	380691..381185	+	164	32265892	-	HH0393	-	hypothetical protein
394	 33.61	0	381160..381522	+	120	32265893	-	HH0394	-	hypothetical protein
395	 36.60	0	381504..382451	-	315	32265894	-	HH0395	-	hypothetical protein
396	 41.22	+1	382630..384531	+	633	32265895	acoE	HH0396	-	acetyl-CoA synthetase
397	 39.38	+1	384535..385410	+	291	32265896	prpB	HH0397	-	2-methylisocitrate lyase
398	 38.90	0	385421..386569	+	382	32265897	prpC	HH0398	-	citrate synthase PrpC
399	 41.98	+1	386603..388060	+	485	32265898	prpD	HH0399	-	2-methylcitrate dehydratase
400	 30.23	-1	388108..388623	+	171	32265899	-	HH0400	-	hypothetical protein
401	 26.55	-2	388738..389253	-	171	32265900	-	HH0401	-	hypothetical protein
402	 30.77	-1	389536..389691	-	51	32265901	-	HH0402	-	hypothetical protein
403	 28.91	-1	389688..390569	-	293	32265902	-	HH0403	-	hypothetical protein
404	 31.39	-1	390631..390990	-	119	32265903	-	HH0404	-	hypothetical protein
405	 32.12	-1	391029..391439	-	136	32265904	-	HH0405	-	hypothetical protein
406	 23.98	-2	391621..391866	+	81	32265905	-	HH0406	-	hypothetical protein
407	 36.58	0	391929..392606	+	225	32265906	ureA	HH0407	-	bifunctional urease subunit gamma/beta
408	 38.65	0	392628..394337	+	569	32265907	ureC	HH0408	-	urease subunit alpha
409	 36.45	0	394347..394859	+	170	32265908	ureI	HH0409	-	urease accessory protein UreI
410	 33.71	0	394859..395383	+	174	161546633	ureE	HH0410	-	urease accessory protein UreE
411	 33.03	0	395380..396042	+	220	32265910	ureF	HH0411	-	urease accessory protein UreF
412	 38.14	0	396053..396655	+	200	32265911	ureG	HH0412	-	urease/hydrogenase-associated GTPase UreG
413	 32.31	0	396730..397410	+	226	32265912	ureH	HH0413	-	urease accessory protein UreH
414	 35.57	0	397413..398126	-	237	32265913	nikE	HH0414	-	nickel transport ATP-binding protein NikE
415	 37.41	0	398120..399787	-	555	32265914	nikD	HH0415	-	nickel transport permease component NikD
416	 36.57	0	399784..400680	-	298	32265915	nikB	HH0416	-	nickel transport system permease protein NikB
417	 36.91	0	400797..402362	-	521	32265916	nikA	HH0417	-	nickel transport system periplasmic component NikA
418	 35.26	0	402505..404679	+	724	32265917	-	HH0418	-	hypothetical protein
419	 37.36	0	404743..405537	+	264	32265918	proB	HH0419	-	gamma-glutamyl kinase
420	 36.70	0	405498..406448	+	316	32265919	fmt	HH0420	-	methionyl-tRNA formyltransferase
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.