IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
282	 38.52	0	277768..278403	-	211	32265781	-	HH0282	-	hypothetical protein
283	 36.19	0	278548..278862	-	104	32265782	-	HH0283	-	hypothetical protein
284	 31.82	-1	279091..279288	-	65	32265783	-	HH0284	-	hypothetical protein
285	 36.51	0	279285..279725	-	146	32265784	-	HH0285	-	hypothetical protein
286	 31.78	-1	279845..279973	-	42	32265785	-	HH0286	-	hypothetical protein
287	 33.58	0	280153..280551	-	132	32265786	-	HH0287	-	hypothetical protein
288	 34.98	0	280624..280926	-	100	32265787	-	HH0288	-	hypothetical protein
289	 28.45	-2	280975..282777	-	600	32265788	-	HH0289	-	hypothetical protein
290	 33.64	0	282791..283441	-	216	32265789	-	HH0290	-	hypothetical protein
291	 35.46	0	283450..284859	-	469	32265790	-	HH0291	-	hypothetical protein
292	 33.18	0	284856..285515	-	219	32265791	-	HH0292	-	hypothetical protein
293	 26.14	-2	285602..286213	-	203	32265792	-	HH0293	-	hypothetical protein
294	 32.12	-1	286290..288848	-	852	32265793	-	HH0294	-	hypothetical protein
295	 29.96	-1	288848..289528	-	226	32265794	-	HH0295	-	hypothetical protein
296	 30.00	-1	289525..290304	-	259	32265795	-	HH0296	-	hypothetical protein
297	 33.93	0	290304..290471	-	55	32265796	-	HH0297	-	hypothetical protein
298	 28.21	-2	290468..291052	-	194	32265797	-	HH0298	-	hypothetical protein
299	 31.61	-1	291049..291627	-	192	32265798	-	HH0299	-	hypothetical protein
300	 26.90	-2	291632..292222	-	196	32265799	-	HH0300	-	hypothetical protein
301	 33.61	0	292581..293294	-	237	32265800	-	HH0301	-	hypothetical protein
302	 33.65	0	293312..294244	-	310	32265801	-	HH0302	-	hypothetical protein
303	 38.14	0	294424..295005	-	193	32265802	trpG	HH0303	-	para-aminobenzoate synthase glutamine amidotransferase component II
304	 38.52	0	295002..296852	-	616	32265803	trpE_1	HH0304	-	para-aminobenzoate synthase glutamine amidotransferase component I
305	 34.39	0	296981..299242	+	753	32265804	-	HH0305	-	hypothetical protein
306	 37.89	0	299258..302749	-	1163	32265805	-	HH0306	-	2-acyl-glycerophospho-ethanolamine acyltransferase
307	 33.65	0	302805..303746	-	313	32265806	-	HH0307	-	hypothetical protein
308	 36.05	0	303836..304756	-	306	32265807	era	HH0308	-	GTP-binding protein Era
309	 38.80	0	304774..306108	-	444	32265808	hslU	HH0309	-	ATP-dependent protease ATP-binding subunit
310	 38.67	0	306122..306664	-	180	32265809	hslV	HH0310	-	ATP-dependent protease peptidase subunit
311	 39.19	0	306679..307122	-	147	32265810	rplI	HH0311	-	50S ribosomal protein L9
312	 38.00	0	307144..307872	+	242	32265811	-	HH0312	-	hypothetical protein
313	 34.59	0	307880..308833	-	317	32265812	-	HH0313	-	hypothetical protein
314	 39.00	0	308843..310447	-	534	32265813	trpD	HH0314	-	anthranilate phosphoribosyltransferase
315	 39.14	0	310451..311947	-	498	32265814	trpE_2	HH0315	-	anthranilate synthase component I
316	 36.85	0	311978..312517	-	179	32265815	lolA	HH0316	-	outer-membrane lipoprotein carrier protein
317	 37.44	0	312635..315190	+	851	161546634	secA	HH0317	-	preprotein translocase subunit SecA
318	 36.20	0	315191..316444	+	417	32265817	-	HH0318	-	hypothetical protein
319	 39.29	0	316541..316792	+	83	32265818	-	HH0319	-	hypothetical protein
320	 42.16	+1	316796..317803	-	335	32265819	hypE	HH0320	-	hydrogenase isoenzyme formation protein
321	 36.90	0	317822..319504	-	560	32265820	-	HH0321	-	hypothetical protein
322	 38.93	0	319508..320650	-	380	32265821	hypD	HH0322	-	hydrogenase isoenzyme formation protein
323	 37.08	0	320643..321362	-	239	32265822	-	HH0323	-	hypothetical protein
324	 37.55	0	321410..321670	-	86	32265823	hypC	HH0324	-	hydrogenase isoenzyme formation protein HypC
325	 37.31	0	321680..322408	-	242	32265824	hypB	HH0325	-	hydrogenase expression/formation protein HypB
326	 37.95	0	322389..324812	-	807	32265825	hypF	HH0326	-	transcriptional regulatory protein HypF
327	 39.95	+1	324933..326141	+	402	32265826	pgk	HH0327	-	phosphoglycerate kinase
328	 38.31	0	326141..326944	+	267	32265827	-	HH0328	-	hypothetical protein
329	 31.73	-1	327008..327319	+	103	32265828	-	HH0329	-	hypothetical protein
330	 28.86	-1	327409..327855	+	148	32265829	-	HH0330	-	hypothetical protein
331	 30.41	-1	327821..328333	+	170	32265830	panD	HH0331	-	aspartate alpha-decarboxylase
332	 38.23	0	328336..328662	+	108	32265831	ybaB	HH0332	-	hypothetical protein
333	 35.86	0	328655..329722	+	355	32265832	-	HH0333	-	hypothetical protein
334	 36.56	0	329731..330597	+	288	32265833	ispA	HH0334	-	geranyltranstransferase
335	 40.63	+1	330594..331388	+	264	32265834	surE	HH0335	-	stationary phase survival protein SurE
336	 34.90	0	331367..332068	+	233	32265835	-	HH0336	-	hypothetical protein
337	 32.59	0	332069..332203	+	44	32265836	-	HH0337	-	hypothetical protein
338	 38.83	0	332213..333103	+	296	32265837	-	HH0338	-	hypothetical protein
339	 39.73	+1	333211..333648	+	145	32265838	-	HH0339	-	hypothetical protein
340	 37.07	0	333898..335715	+	605	32265839	-	HH0340	-	hypothetical protein
341	 35.98	0	335719..336285	-	188	32265840	-	HH0341	-	hypothetical protein
342	 30.73	-1	336269..336652	-	127	32265841	-	HH0342	-	hypothetical protein
343	 30.30	-1	336655..336819	-	54	32265842	-	HH0343	-	hypothetical protein
344	 30.48	-1	336719..336928	+	69	32265843	-	HH0344	-	hypothetical protein
345	 37.58	0	336946..337605	+	219	32265844	glnP	HH0345	-	glutamine ABC transporter permease GlnP
346	 38.75	0	337653..338261	+	202	32265845	-	HH0346	-	hypothetical protein
347	 38.51	0	338258..339010	+	250	32265846	glnQ_1	HH0347	-	hypothetical protein
348	 35.25	0	339007..339528	-	173	32265847	-	HH0348	-	hypothetical protein
349	 34.56	0	339643..340623	-	326	32265848	-	HH0349	-	hypothetical protein
350	 30.99	-1	340626..340967	-	113	32265849	-	HH0350	-	hypothetical protein
351	 36.23	0	340997..341653	-	218	32265850	-	HH0351	-	hypothetical protein
352	 38.43	0	341634..342065	-	143	32265851	-	HH0352	-	nickel responsive regulator
353	 33.56	0	342217..342654	+	145	32265852	-	HH0353	-	biopolymer transport protein
354	 31.23	-1	342657..343037	+	126	32265853	-	HH0354	-	biopolymer transport protein
355	 32.92	0	343003..343731	+	242	32265854	-	HH0355	-	TonB-like protein
356	 35.77	0	343753..344163	-	136	32265855	-	HH0356	-	hypothetical protein
357	 37.15	0	344219..344506	-	95	32265856	-	HH0357	-	hypothetical protein
358	 39.15	0	344510..346588	-	692	32265857	fusA	HH0358	-	elongation factor G
359	 37.82	0	346604..347071	-	155	32265858	rpsG	HH0359	-	30S ribosomal protein S7
360	 40.77	+1	347087..347476	-	129	32265859	rpsL	HH0360	-	30S ribosomal protein S12
361	 37.55	0	347568..356252	-	2894	32265860	rpoB	HH0361	-	DNA-directed RNA polymerase subunit beta/beta'
362	 41.21	+1	356400..356780	-	126	32265861	rplL	HH0362	-	50S ribosomal protein L7/L12
363	 34.78	0	356801..357283	-	160	32265862	rplJ	HH0363	-	50S ribosomal protein L10
364	 38.87	0	357374..358078	-	234	32265863	rplA	HH0364	-	50S ribosomal protein L1
365	 36.62	0	358095..358520	-	141	32265864	rplK	HH0365	-	50S ribosomal protein L11
366	 35.47	0	358550..359065	-	171	32265865	nusG	HH0366	-	transcription antitermination protein NusG
367	 27.32	-2	359086..359268	-	60	32265866	secE	HH0367	-	preprotein translocase subunit SecE
368	 34.50	0	359396..359566	-	56	32265867	rpmG	HH0368	-	50S ribosomal protein L33
369	 40.08	+1	359581..360780	-	399	32265868	tuf	HH0369	-	elongation factor Tu
370	 29.65	-1	361949..362437	+	162	32265869	-	HH0370	-	hypothetical protein
371	 28.07	-2	362976..363089	+	37	32265870	-	HH0371	-	hypothetical protein
372	 39.12	0	363192..364349	+	385	32265871	-	HH0372	-	hypothetical protein
373	 37.58	0	364346..365665	+	439	32265872	murC	HH0373	-	UDP-N-acetylmuramate--L-alanine ligase
374	 33.55	0	365665..366117	+	150	32265873	-	HH0374	-	hypothetical protein
375	 36.80	0	366104..368326	+	740	32265874	mutS	HH0375	-	recombination and DNA strand exchange inhibitor protein
376	 35.08	0	368393..369136	+	247	32265875	-	HH0376	-	hypothetical protein
377	 31.29	-1	369136..369429	+	97	32265876	-	HH0377	-	hypothetical protein
378	 40.13	+1	369445..369915	-	156	32265877	-	HH0378	-	rRNA methylase (SpoU class)
379	 38.98	0	370065..371639	+	524	32265878	dcuA	HH0379	-	anaerobic C4-dicarboxylate transporter
380	 37.09	0	371691..372728	+	345	32265879	galE	HH0380	-	UDP-glucose 4-epimerase
381	 29.25	-1	372745..373503	+	252	32265880	-	HH0381	-	hypothetical protein
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.