IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
206	 32.48	0	198557..199489	-	310	32265705	-	HH0206	-	hypothetical protein
207	 35.90	0	199492..200310	-	272	32265706	-	HH0207	-	hypothetical protein
208	 38.39	0	200539..201606	-	355	32265707	-	HH0208	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
209	 25.00	-2	201638..201745	-	35	32265708	-	HH0209	-	hypothetical protein
210	 35.88	0	201766..202236	-	156	32265709	dps	HH0210	-	starvation-inducible DNA-binding protein Dps
211	 29.27	-1	202275..202397	-	40	32265710	-	HH0211	-	hypothetical protein
212	 35.22	0	203064..203540	+	158	32265711	-	HH0212	-	hypothetical protein
213	 36.88	0	203584..204456	+	290	32265712	-	HH0213	-	hypothetical protein
214	 34.91	0	204449..205273	-	274	32265713	-	HH0214	-	hypothetical protein
215	 40.04	+1	205388..205894	+	168	32265714	-	HH0215	-	hypothetical protein
216	 34.88	0	205917..206240	+	107	32265715	-	HH0216	-	hypothetical protein
217	 39.87	+1	206284..207768	+	494	32265716	-	HH0217	-	hypothetical protein
218	 36.88	0	207823..207963	+	46	32265717	-	HH0218	-	hypothetical protein
219	 31.52	-1	208046..208870	+	274	32265718	-	HH0219	-	hypothetical protein
220	 36.50	0	208882..209292	+	136	32265719	dgkA	HH0220	-	diacylglycerol kinase
221	 36.45	0	209299..210069	-	256	32265720	-	HH0221	-	hypothetical protein
222	 38.41	0	210145..213219	-	1024	32265721	-	HH0222	-	hypothetical protein
223	 34.62	0	213219..213920	-	233	32265722	-	HH0223	-	hypothetical protein
224	 35.61	0	213939..215297	-	452	32265723	-	HH0224	-	hypothetical protein
225	 39.87	+1	215394..216173	-	259	32265724	fdhD	HH0225	-	formate dehydrogenase accessory protein
226	 39.69	+1	216182..217156	-	324	32265725	fdhC	HH0226	-	formate dehydrogenase-N
227	 42.06	+1	217167..217796	-	209	32265726	fdhB	HH0227	-	Fe-S-cluster-containing formate dehydrogenase component 1
228	 40.23	+1	217811..220057	-	748	32265727	-	HH0228	-	hypothetical protein
229	 42.16	+1	220079..220633	-	184	32265728	-	HH0229	-	hypothetical protein
230	 39.81	+1	220653..220868	-	71	32265729	-	HH0230	-	hypothetical protein
231	 34.42	0	220957..221601	-	214	32265730	-	HH0231	-	hypothetical protein
232	 37.71	0	221601..223130	-	509	32265731	-	HH0232	-	hypothetical protein
233	 33.94	0	223218..224198	-	326	32265732	-	HH0233	-	hypothetical protein
234	 32.44	0	224333..225118	-	261	32265733	-	HH0234	-	hypothetical protein
235	 32.01	-1	225105..226610	-	501	32265734	-	HH0235	-	hypothetical protein
236	 29.89	-1	226607..227245	-	212	32265735	-	HH0236	-	hypothetical protein
237	 33.84	0	227242..228036	-	264	32265736	-	HH0237	-	hypothetical protein
238	 34.96	0	228126..228986	-	286	32265737	-	HH0238	-	DNA adenine methylase
239	 30.28	-1	228983..229768	-	261	32265738	-	HH0239	-	type II restriction endonuclease
240	 31.27	-1	229864..230250	-	128	32265739	-	HH0240	-	hypothetical protein
241	 32.71	0	230306..231583	-	425	32265740	-	HH0241	-	hypothetical protein
242	 33.69	0	231618..234416	-	932	32265741	-	HH0242	-	hypothetical protein
243	 38.04	0	234543..235052	-	169	32265742	-	HH0243	-	hypothetical protein
244	 32.33	0	235149..236144	-	331	32265743	-	HH0244	-	hypothetical protein
245	 32.11	-1	236141..237856	-	571	32265744	-	HH0245	-	hypothetical protein
246	 29.23	-1	237926..238315	-	129	32265745	-	HH0246	-	hypothetical protein
247	 36.73	0	238319..239791	-	490	32265746	-	HH0247	-	hypothetical protein
248	 36.55	0	239839..240336	-	165	32265747	-	HH0248	-	hypothetical protein
249	 37.62	0	240524..241060	+	178	32265748	-	HH0249	-	hypothetical protein
250	 35.22	0	241053..242432	+	459	32265749	-	HH0250	-	hypothetical protein
251	 35.11	0	242444..243232	+	262	32265750	-	HH0251	-	hypothetical protein
252	 31.50	-1	243237..246791	+	1184	32265751	-	HH0252	-	hypothetical protein
253	 32.62	0	246801..247781	+	326	32265752	-	HH0253	-	hypothetical protein
254	 34.12	0	247872..249140	-	422	32265753	-	HH0254	-	hypothetical protein
255	 33.54	0	249168..253067	-	1299	32265754	-	HH0255	-	hypothetical protein
256	 32.11	-1	253173..254729	-	518	32265755	-	HH0256	-	hypothetical protein
257	 30.42	-1	254722..256059	-	445	32265756	-	HH0257	-	hypothetical protein
258	 25.75	-2	256069..256437	-	122	32265757	-	HH0258	-	hypothetical protein
259	 31.73	-1	256448..257131	-	227	32265758	-	HH0259	-	hypothetical protein
260	 29.26	-1	257124..258914	-	596	32265759	-	HH0260	-	hypothetical protein
261	 31.20	-1	258911..259519	-	202	32265760	-	HH0261	-	hypothetical protein
262	 35.90	0	260339..260572	-	77	32265761	-	HH0262	-	hypothetical protein
263	 22.88	-2	260650..260802	-	50	32265762	-	HH0263	-	hypothetical protein
264	 31.48	-1	260976..261083	-	35	32265763	-	HH0264	-	hypothetical protein
265	 39.89	+1	261105..261455	+	116	32265764	-	HH0265	-	hypothetical protein
266	 35.61	0	261497..262198	+	233	32265765	-	HH0266	-	hypothetical protein
267	 34.72	0	262248..262463	+	71	32265766	-	HH0267	-	hypothetical protein
268	 34.94	0	262472..262783	+	103	32265767	-	HH0268	-	hypothetical protein
269	 37.12	0	263405..264250	-	281	32265768	-	HH0269	-	integrase
270	 38.75	0	264681..266786	-	701	32265769	-	HH0270	-	hypothetical protein
271	 34.29	0	266913..267017	+	34	32265770	-	HH0271	-	hypothetical protein
272	 27.42	-2	267829..268335	-	168	32265771	-	HH0272	-	hypothetical protein
273	 31.61	-1	268350..268697	-	115	32265772	-	HH0273	-	hypothetical protein
274	 31.57	-1	268841..269578	-	245	32265773	-	HH0274	-	hypothetical protein
275	 40.42	+1	270051..273479	+	1142	32265774	-	HH0275	-	hypothetical protein
276	 40.65	+1	273583..274074	-	163	32265775	-	HH0276	-	hypothetical protein
277	 34.07	0	274388..274930	+	180	32265776	-	HH0277	-	hypothetical protein
278	 28.46	-2	274985..275353	+	122	32265777	-	HH0278	-	hypothetical protein
279	 33.33	0	275943..276164	+	73	32265778	-	HH0279	-	hypothetical protein
280	 29.67	-1	276333..277097	+	254	32265779	-	HH0280	-	hypothetical protein
281	 32.72	0	277272..277757	-	161	32265780	-	HH0281	-	hypothetical protein
282	 38.52	0	277768..278403	-	211	32265781	-	HH0282	-	hypothetical protein
283	 36.19	0	278548..278862	-	104	32265782	-	HH0283	-	hypothetical protein
284	 31.82	-1	279091..279288	-	65	32265783	-	HH0284	-	hypothetical protein
285	 36.51	0	279285..279725	-	146	32265784	-	HH0285	-	hypothetical protein
286	 31.78	-1	279845..279973	-	42	32265785	-	HH0286	-	hypothetical protein
287	 33.58	0	280153..280551	-	132	32265786	-	HH0287	-	hypothetical protein
288	 34.98	0	280624..280926	-	100	32265787	-	HH0288	-	hypothetical protein
289	 28.45	-2	280975..282777	-	600	32265788	-	HH0289	-	hypothetical protein
290	 33.64	0	282791..283441	-	216	32265789	-	HH0290	-	hypothetical protein
291	 35.46	0	283450..284859	-	469	32265790	-	HH0291	-	hypothetical protein
292	 33.18	0	284856..285515	-	219	32265791	-	HH0292	-	hypothetical protein
293	 26.14	-2	285602..286213	-	203	32265792	-	HH0293	-	hypothetical protein
294	 32.12	-1	286290..288848	-	852	32265793	-	HH0294	-	hypothetical protein
295	 29.96	-1	288848..289528	-	226	32265794	-	HH0295	-	hypothetical protein
296	 30.00	-1	289525..290304	-	259	32265795	-	HH0296	-	hypothetical protein
297	 33.93	0	290304..290471	-	55	32265796	-	HH0297	-	hypothetical protein
298	 28.21	-2	290468..291052	-	194	32265797	-	HH0298	-	hypothetical protein
299	 31.61	-1	291049..291627	-	192	32265798	-	HH0299	-	hypothetical protein
300	 26.90	-2	291632..292222	-	196	32265799	-	HH0300	-	hypothetical protein
301	 33.61	0	292581..293294	-	237	32265800	-	HH0301	-	hypothetical protein
302	 33.65	0	293312..294244	-	310	32265801	-	HH0302	-	hypothetical protein
303	 38.14	0	294424..295005	-	193	32265802	trpG	HH0303	-	para-aminobenzoate synthase glutamine amidotransferase component II
304	 38.52	0	295002..296852	-	616	32265803	trpE_1	HH0304	-	para-aminobenzoate synthase glutamine amidotransferase component I
305	 34.39	0	296981..299242	+	753	32265804	-	HH0305	-	hypothetical protein
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.