IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
121	 32.26	0	118056..118523	-	155	32265620	smpB	HH0121	-	SsrA-binding protein
122	 36.86	0	118525..119205	-	226	32265621	-	HH0122	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
123	 36.25	0	119335..119574	-	79	32265622	-	HH0123	-	carbon storage regulator
124	 36.73	0	119546..120400	-	284	32265623	truB	HH0124	-	tRNA pseudouridine synthase B
125	 33.43	0	120463..121524	-	353	32265624	-	HH0125	-	hypothetical protein
126	 37.05	0	121531..122391	-	286	32265625	-	HH0126	-	hypothetical protein
127	 37.55	0	122388..122885	-	165	32265626	-	HH0127	-	hypothetical protein
128	 32.46	0	122898..124379	-	493	32265627	-	HH0128	-	hypothetical protein
129	 32.65	0	124390..124680	-	96	32265628	-	HH0129	-	hypothetical protein
130	 35.15	0	124677..125282	-	201	32265629	-	HH0130	-	hypothetical protein
131	 33.33	0	125433..126485	-	350	32265630	ddl	HH0131	-	D-alanyl-alanine synthetase A
132	 37.43	0	126488..129319	-	943	32265631	uvrA	HH0132	-	excinuclease ABC subunit A
133	 35.48	0	129365..129643	-	92	32265632	-	HH0133	-	hypothetical protein
134	 39.84	+1	129507..129629	+	40	32265633	-	HH0134	-	hypothetical protein
135	 37.89	0	129667..131247	-	526	32265634	serA	HH0135	-	D-3-phosphoglycerate dehydrogenase
136	 35.91	0	131269..131733	-	154	32265635	-	HH0136	-	hypothetical protein
137	 34.30	0	131750..133408	-	552	32265636	rpsA	HH0137	-	30S ribosomal protein S1
138	 34.91	0	133502..134323	-	273	32265637	ispH	HH0138	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
139	 39.26	0	134313..135629	-	438	32265638	aroA	HH0139	-	3-phosphoshikimate 1-carboxyvinyltransferase
140	 35.22	0	135696..136754	-	352	32265639	-	HH0140	-	two component system sensor kinase protein
141	 31.51	-1	136738..137121	-	127	32265640	-	HH0141	-	hypothetical protein
142	 38.20	0	137132..138178	-	348	32265641	flgI	HH0142	-	flagellar basal body P-ring protein
143	 38.89	0	138399..139010	-	203	32265642	-	HH0143	-	hypothetical protein
144	 37.73	0	139010..139441	-	143	32265643	-	HH0144	-	hypothetical protein
145	 30.23	-1	139588..139716	+	42	32265644	-	HH0145	-	hypothetical protein
146	 22.22	-2	139780..139878	-	32	32265645	-	HH0146	-	hypothetical protein
147	 38.61	0	139870..141612	+	580	32265646	-	HH0147	-	hypothetical protein
148	 37.58	0	141622..141951	-	109	32265647	-	HH0148	-	hypothetical protein
149	 35.11	0	141965..142582	-	205	32265648	hisG	HH0149	-	ATP phosphoribosyltransferase catalytic subunit
150	 34.94	0	142614..143234	-	206	32265649	-	HH0150	-	pantothenate kinase
151	 31.09	-1	143234..144259	-	341	32265650	-	HH0151	-	hypothetical protein
152	 34.71	0	144289..144942	-	217	32265651	-	HH0152	-	hypothetical protein
153	 42.35	+1	144953..145429	-	158	32265652	dut	HH0153	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
154	 39.02	0	145433..145924	-	163	32265653	greA	HH0154	-	transcription elongation factor GreA
155	 37.02	0	146038..147339	-	433	32265654	putP	HH0155	-	sodium/proline symporter
156	 32.36	0	147609..151109	-	1166	32265655	-	HH0156	-	hypothetical protein
157	 26.04	-2	151140..151235	-	31	32265656	-	HH0157	-	hypothetical protein
158	 39.59	+1	151422..154235	+	937	32265657	napA	HH0158	-	nitrate reductase
159	 39.98	+1	154245..155087	+	280	32265658	napG	HH0159	-	quinol dehydrogenase periplasmic component
160	 37.20	0	155087..156016	+	309	32265659	napH	HH0160	-	quinol dehydrogenase membrane component
161	 38.12	0	156013..156576	+	187	32265660	napB	HH0161	-	periplasmic nitrate reductase
162	 35.62	0	156588..157637	+	349	32265661	-	HH0162	-	hypothetical protein
163	 33.61	0	157637..157996	+	119	32265662	napD	HH0163	-	periplasmic nitrate reductase component NapD
164	 35.88	0	158071..158463	-	130	32265663	-	HH0164	-	hypothetical protein
165	 34.25	0	158583..159020	-	145	32265664	-	HH0165	-	hypothetical protein
166	 34.44	0	159256..159708	+	150	32265665	-	HH0166	-	hypothetical protein
167	 36.38	0	159703..161079	-	458	32265666	-	HH0167	-	hypothetical protein
168	 38.43	0	161093..161818	-	241	32265667	kdsB	HH0168	-	3-deoxy-manno-octulosonate cytidylyltransferase
169	 34.82	0	161887..163098	-	403	32265668	-	HH0169	-	hypothetical protein
170	 30.56	-1	163233..163412	+	59	32265669	-	HH0170	-	hypothetical protein
171	 35.13	0	163418..165418	+	666	32265670	-	HH0171	-	hypothetical protein
172	 39.31	0	165492..166628	+	378	32265671	gmd	HH0172	-	GDP-D-mannose dehydratase
173	 35.44	0	166657..167700	+	347	32265672	-	HH0173	-	hypothetical protein
174	 38.06	0	167702..170830	-	1042	32265673	-	HH0174	-	hypothetical protein
175	 37.39	0	170840..172021	-	393	32265674	-	HH0175	-	hypothetical protein
176	 37.95	0	172273..172770	-	165	32265675	ygaG	HH0176	-	S-ribosylhomocysteinase
177	 34.48	0	172826..173260	-	144	32265676	-	HH0177	-	hypothetical protein
178	 36.86	0	173304..174239	-	311	32265677	-	HH0178	-	2-hydroxyacid dehydrogenase
179	 37.01	0	174324..175166	+	280	32265678	argB	HH0179	-	acetylglutamate kinase
180	 33.33	0	175163..175642	+	159	32265679	-	HH0180	-	hypothetical protein
181	 37.97	0	175658..175894	+	78	32265680	-	HH0181	-	hypothetical protein
182	 35.57	0	175875..176456	+	193	32265681	-	HH0182	-	hypothetical protein
183	 36.77	0	176944..179181	-	745	32265682	flgE	HH0183	-	flagellar hook protein FlgE
184	 36.01	0	179178..179999	-	273	32265683	flgD	HH0184	-	flagellar basal body rod modification protein
185	 35.28	0	180021..181256	-	411	32265684	-	HH0185	-	hypothetical protein
186	 35.64	0	181393..182301	-	302	32265685	-	HH0186	-	hypothetical protein
187	 36.24	0	182568..183254	-	228	32265686	-	HH0187	-	hypothetical protein
188	 35.79	0	183254..184150	-	298	32265687	-	HH0188	-	hypothetical protein
189	 39.54	+1	184273..185013	-	246	32265688	-	HH0189	-	hypothetical protein
190	 35.92	0	185029..185337	-	102	32265689	-	HH0190	-	hypothetical protein
191	 38.21	0	185594..185716	+	40	32265690	-	HH0191	-	hypothetical protein
192	 40.48	+1	185783..185908	-	41	32265691	-	HH0192	-	hypothetical protein
193	 35.80	0	186061..186627	-	188	161546635	dcd	HH0193	-	deoxycytidine triphosphate deaminase
194	 39.03	0	186721..187194	+	157	32265693	accB	HH0194	-	biotin carboxyl carrier protein
195	 39.56	+1	187204..188568	+	454	32265694	accC	HH0195	-	biotin carboxylase
196	 31.30	-1	188600..189289	+	229	32265695	-	HH0196	-	hypothetical protein
197	 36.13	0	189306..190484	+	392	32265696	-	HH0197	-	hypothetical protein
198	 39.06	0	190571..192229	+	552	32265697	-	HH0198	-	hypothetical protein
199	 31.22	-1	192315..193118	+	267	32265698	-	HH0199	-	hypothetical protein
200	 32.01	-1	193150..193827	+	225	32265699	-	HH0200	-	hypothetical protein
201	 37.25	0	194149..194658	+	169	32265700	-	HH0201	-	hypothetical protein
202	 38.25	0	194663..195130	+	155	32265701	-	HH0202	-	hypothetical protein
203	 34.79	0	195137..196237	-	366	32265702	glf	HH0203	-	UDP-galactopyranose mutase
204	 31.42	-1	196241..197284	-	347	32265703	-	HH0204	-	glycosyl transferase
205	 34.92	0	197365..198495	-	376	32265704	-	HH0205	-	glycosyl transferase
206	 32.48	0	198557..199489	-	310	32265705	-	HH0206	-	hypothetical protein
207	 35.90	0	199492..200310	-	272	32265706	-	HH0207	-	hypothetical protein
208	 38.39	0	200539..201606	-	355	32265707	-	HH0208	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
209	 25.00	-2	201638..201745	-	35	32265708	-	HH0209	-	hypothetical protein
210	 35.88	0	201766..202236	-	156	32265709	dps	HH0210	-	starvation-inducible DNA-binding protein Dps
211	 29.27	-1	202275..202397	-	40	32265710	-	HH0211	-	hypothetical protein
212	 35.22	0	203064..203540	+	158	32265711	-	HH0212	-	hypothetical protein
213	 36.88	0	203584..204456	+	290	32265712	-	HH0213	-	hypothetical protein
214	 34.91	0	204449..205273	-	274	32265713	-	HH0214	-	hypothetical protein
215	 40.04	+1	205388..205894	+	168	32265714	-	HH0215	-	hypothetical protein
216	 34.88	0	205917..206240	+	107	32265715	-	HH0216	-	hypothetical protein
217	 39.87	+1	206284..207768	+	494	32265716	-	HH0217	-	hypothetical protein
218	 36.88	0	207823..207963	+	46	32265717	-	HH0218	-	hypothetical protein
219	 31.52	-1	208046..208870	+	274	32265718	-	HH0219	-	hypothetical protein
220	 36.50	0	208882..209292	+	136	32265719	dgkA	HH0220	-	diacylglycerol kinase
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.