IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1577	 37.01	0	1507362..1507715	+	117	32267076	fliN	HH1577	-	flagellar motor switch protein
1578	 34.09	0	1507833..1508624	+	263	32267077	-	HH1578	-	hypothetical protein
1579	 36.76	0	1508624..1509382	+	252	32267078	-	HH1579	-	hypothetical protein
1580	 37.00	0	1509394..1509693	-	99	32267079	-	HH1580	-	hypothetical protein
1581	 39.67	+1	1509707..1511080	-	457	32267080	thiC	HH1581	-	thiamine biosynthesis protein ThiC
1582	 37.78	0	1511265..1512434	+	389	32267081	ispDF	HH1582	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
1583	 33.11	0	1512482..1513390	+	302	32267082	-	HH1583	-	hypothetical protein
1584	 35.80	0	1513387..1513872	+	161	32267083	pgpA	HH1584	-	phosphatidylglycerophosphatase A
1585	 28.32	-2	1513894..1514412	-	172	32267084	-	HH1585	-	hypothetical protein
1586	 33.33	0	1514436..1514537	-	33	32267085	-	HH1586	-	hypothetical protein
1587	 35.53	0	1514559..1515104	-	181	32267086	-	HH1587	-	hypothetical protein
1588	 41.57	+1	1515149..1515961	-	270	32267087	thiF	HH1588	-	thiamine biosynthesis protein ThiF
1589	 34.85	0	1515961..1518330	-	789	32267088	pflA	HH1589	-	paralysed flagella protein PflA
1590	 34.82	0	1518370..1519848	-	492	32267089	nuoN	HH1590	-	NADH dehydrogenase subunit N
1591	 36.12	0	1519850..1521427	-	525	32267090	nuoM	HH1591	-	NADH dehydrogenase subunit M
1592	 37.17	0	1521424..1523301	-	625	32267091	nuoL	HH1592	-	NADH dehydrogenase subunit L
1593	 33.00	0	1523304..1523606	-	100	32267092	nuoK	HH1593	-	NADH dehydrogenase subunit K
1594	 32.76	0	1523603..1524124	-	173	32267093	nuoJ	HH1594	-	NADH dehydrogenase subunit J
1595	 38.03	0	1524117..1524755	-	212	32267094	nuoI	HH1595	-	NADH dehydrogenase subunit I
1596	 39.14	0	1524764..1525762	-	332	32267095	nuoH	HH1596	-	NADH dehydrogenase subunit H
1597	 36.16	0	1525759..1528233	-	824	32267096	nuoG	HH1597	-	NADH dehydrogenase subunit G
1598	 35.67	0	1528230..1529042	-	270	32267097	-	HH1598	-	hypothetical protein
1599	 32.90	0	1529039..1529269	-	76	32267098	-	HH1599	-	hypothetical protein
1600	 36.18	0	1529279..1530508	-	409	32267099	nuoD	HH1600	-	NADH dehydrogenase subunit D
1601	 34.01	0	1530505..1531248	-	247	32267100	nuoC	HH1601	-	NADH dehydrogenase subunit C
1602	 40.00	+1	1531262..1531771	-	169	32267101	nuoB	HH1602	-	NADH dehydrogenase subunit B
1603	 36.05	0	1531753..1532157	-	134	32267102	nuoA	HH1603	-	NADH dehydrogenase subunit A
1604	 37.80	0	1532285..1533001	-	238	161546622	yebC	HH1604	-	hypothetical protein
1605	 32.38	0	1532989..1533093	+	34	32267104	-	HH1605	-	hypothetical protein
1606	 36.81	0	1533122..1534099	-	325	32267105	hemB	HH1606	-	delta-aminolevulinic acid dehydratase
1607	 31.75	-1	1534110..1535369	-	419	32267106	-	HH1607	-	two-component system histidine kinase
1608	 36.04	0	1535384..1536049	-	221	32267107	-	HH1608	-	two-component system response regulator
1609	 43.59	+2	1536243..1536359	+	38	32267108	-	HH1609	-	hypothetical protein
1610	 35.83	0	1536474..1536833	-	119	32267109	-	HH1610	-	hypothetical protein
1611	 34.85	0	1536803..1537066	-	87	32267110	-	HH1611	-	hypothetical protein
1612	 35.07	0	1537143..1537946	-	267	32267111	-	HH1612	-	hypothetical protein
1613	 27.18	-2	1537936..1538244	-	102	32267112	-	HH1613	-	hypothetical protein
1614	 36.49	0	1538248..1539579	-	443	32267113	-	HH1614	-	hypothetical protein
1615	 39.70	+1	1539596..1540129	-	177	32267114	ppiA	HH1615	-	peptidyl-prolyl cis-trans isomerase (rotamase)
1616	 31.77	-1	1540369..1541265	+	298	32267115	-	HH1616	-	hypothetical protein
1617	 24.73	-2	1541277..1541369	-	30	32267116	-	HH1617	-	hypothetical protein
1618	 37.59	0	1541379..1542764	+	461	32267117	-	HH1618	-	protease
1619	 34.74	0	1542780..1543490	+	236	32267118	purC	HH1619	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1620	 33.74	0	1543500..1543742	+	80	32267119	purS	HH1620	-	hypothetical protein
1621	 37.52	0	1543739..1544407	+	222	32267120	purQ	HH1621	-	phosphoribosylformylglycinamidine synthase subunit I
1622	 32.05	-1	1544420..1545514	+	364	32267121	-	HH1622	-	hypothetical protein
1623	 37.45	0	1545498..1546226	+	242	32267122	plsC	HH1623	-	1-acyl-glycerol-3-phosphate acyltransferase PlsC
1624	 37.10	0	1546443..1547849	+	468	32267123	pyrD	HH1624	-	dihydroorotate dehydrogenase
1625	 34.26	0	1547880..1549178	+	432	32267124	-	HH1625	-	putative zinc protease
1626	 37.87	0	1549181..1550062	+	293	32267125	dapA	HH1626	-	dihydrodipicolinate synthase
1627	 38.18	0	1550059..1550862	+	267	32267126	-	HH1627	-	7-alpha-hydroxysteroid dehydrogenase
1628	 34.16	0	1551027..1552229	+	400	32267127	-	HH1628	-	apolipoprotein N-acyltransferase
1629	 36.88	0	1552335..1553096	+	253	32267128	-	HH1629	-	hypothetical protein
1630	 35.50	0	1553201..1554865	+	554	32267129	-	HH1630	-	hypothetical protein
1631	 37.60	0	1554891..1556297	-	468	32267130	dagA	HH1631	-	amino-acid transport protein
1632	 33.81	0	1556472..1557098	-	208	32267131	-	HH1632	-	hypothetical protein
1633	 37.62	0	1557237..1559711	+	824	32267132	gyrA	HH1633	-	DNA gyrase subunit A
1634	 37.13	0	1559752..1560225	+	157	32267133	-	HH1634	-	hypothetical protein
1635	 37.22	0	1560222..1561532	+	436	32267134	flgR	HH1635	-	transcriptional activator FlgR
1636	 31.23	-1	1561553..1562074	+	173	32267135	-	HH1636	-	hypothetical protein
1637	 36.00	0	1562121..1562984	-	287	32267136	-	HH1637	-	hypothetical protein
1638	 34.16	0	1563169..1564134	-	321	32267137	-	HH1638	-	hypothetical protein
1639	 33.67	0	1564262..1565158	-	298	32267138	-	HH1639	-	hypothetical protein
1640	 36.89	0	1565151..1566386	-	411	32267139	-	HH1640	-	recombination factor protein RarA
1641	 37.83	0	1566380..1566757	-	125	32267140	hspR	HH1641	-	putative heat shock transcriptional regulator
1642	 38.81	0	1566783..1567676	-	297	32267141	cbpA	HH1642	-	curved DNA-binding protein CbpA
1643	 32.00	-1	1567835..1570750	+	971	32267142	-	HH1643	-	putative helicase
1644	 34.35	0	1571029..1572411	+	460	32267143	-	HH1644	-	hypothetical protein
1645	 37.83	0	1572432..1573766	+	444	32267144	nhaA	HH1645	-	Na+/H+ antiporter
1646	 33.33	0	1573817..1574110	+	97	32267145	yajC	HH1646	-	preprotein translocase subunit YajC
1647	 38.01	0	1574117..1575955	+	612	32267146	secD	HH1647	-	preprotein translocase subunit SecD
1648	 35.91	0	1575959..1576930	+	323	32267147	secF	HH1648	-	preprotein translocase subunit SecF
1649	 34.21	0	1576941..1577282	+	113	32267148	-	HH1649	-	hypothetical protein
1650	 35.43	0	1577318..1578031	+	237	32267149	-	HH1650	-	hypothetical protein
1651	 32.95	0	1578043..1580133	+	696	32267150	-	HH1651	-	hypothetical protein
1652	 38.96	0	1580137..1580598	-	153	32267151	-	HH1652	-	hypothetical protein
1653	 37.33	0	1580835..1582361	+	508	32267152	flaA_2	HH1653	-	flagellin A
1654	 35.28	0	1582612..1583280	+	222	32267153	-	HH1654	-	hypothetical protein
1655	 34.53	0	1583353..1583769	+	138	32267154	-	HH1655	-	hypothetical protein
1656	 34.23	0	1583821..1584492	+	223	32267155	-	HH1656	-	hypothetical protein
1657	 32.63	0	1584505..1585788	+	427	32267156	-	HH1657	-	hypothetical protein
1658	 36.20	0	1585869..1587332	+	487	32267157	dnaB	HH1658	-	replicative DNA helicase
1659	 31.99	-1	1587342..1588679	+	445	32267158	-	HH1659	-	hypothetical protein
1660	 37.44	0	1588652..1589941	-	429	32267159	-	HH1660	-	hypothetical protein
1661	 37.46	0	1589941..1590522	-	193	32267160	-	HH1661	-	hypothetical protein
1662	 37.90	0	1590519..1591481	-	320	32267161	wbpB	HH1662	-	lipopolysaccharide biosynthesis protein wbpB
1663	 38.73	0	1591489..1592415	-	308	32267162	-	HH1663	-	hypothetical protein
1664	 35.90	0	1592460..1593005	-	181	32267163	-	HH1664	-	hypothetical protein
1665	 37.57	0	1593017..1594267	-	416	32267164	glyA	HH1665	-	serine hydroxymethyltransferase
1666	 34.43	0	1594267..1595823	-	518	32267165	lysS	HH1666	-	lysyl-tRNA synthetase
1667	 34.62	0	1595836..1596459	-	207	32267166	-	HH1667	-	hypothetical protein
1668	 34.11	0	1596645..1597541	+	298	32267167	ubiA	HH1668	-	prenyltransferase
1669	 34.57	0	1597531..1598097	+	188	32267168	-	HH1669	-	hypothetical protein
1670	 31.25	-1	1598101..1598628	+	175	32267169	-	HH1670	-	hypothetical protein
1671	 37.37	0	1598650..1599837	+	395	32267170	-	HH1671	-	aspartate aminotransferase
1672	 37.12	0	1599841..1601133	+	430	32267171	-	HH1672	-	hypothetical protein
1673	 32.30	0	1601130..1601804	+	224	32267172	-	HH1673	-	hypothetical protein
1674	 32.83	0	1601878..1603848	+	656	32267173	-	HH1674	-	hypothetical protein
1675	 36.46	0	1603852..1604619	+	255	32267174	-	HH1675	-	hypothetical protein
1676	 34.81	0	1604639..1604773	+	44	32267175	-	HH1676	-	hypothetical protein
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.