IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1469	 43.20	+2	1410599..1411216	+	205	32266968	-	HH1469	-	hypothetical protein
1470	 40.11	+1	1411334..1413265	+	643	32266969	-	HH1470	-	hypothetical protein
1471	 39.70	+1	1413597..1414475	+	292	32266970	-	HH1471	-	aldo-keto reductase
1472	 40.68	+1	1414566..1415150	+	194	32266971	mdaB	HH1472	-	putative modulator of drug activity MdaB
1473	 42.93	+1	1415203..1415952	+	249	32266972	-	HH1473	-	hypothetical protein
1474	 37.02	0	1415926..1416495	-	189	32266973	-	HH1474	-	hypothetical protein
1475	 38.44	0	1416672..1417043	-	123	32266974	-	HH1475	-	hypothetical protein
1476	 41.41	+1	1416895..1417290	-	131	32266975	-	HH1476	-	hypothetical protein
1477	 39.39	+1	1417378..1417476	+	32	32266976	-	HH1477	-	hypothetical protein
1478	 41.33	+1	1417559..1418596	+	345	32266977	-	HH1478	-	hypothetical protein
1479	 37.93	0	1418593..1419267	+	224	32266978	-	HH1479	-	hypothetical protein
1480	 39.94	+1	1419518..1420183	+	221	32266979	glnQ_2	HH1480	-	ABC-type amino-acid transporter
1481	 34.74	0	1420203..1420985	+	260	32266980	-	HH1481	-	bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein
1482	 37.87	0	1420990..1421739	+	249	32266981	-	HH1482	-	putative ABC-type amino-acid transporter permease protein
1483	 34.09	0	1421750..1422409	+	219	32266982	gltK	HH1483	-	putative ABC-type amino-acid transporter permease protein
1484	 32.85	0	1422524..1422940	-	138	32266983	-	HH1484	-	hypothetical protein
1485	 31.98	-1	1422937..1423158	-	73	32266984	-	HH1485	-	hypothetical protein
1486	 37.46	0	1423188..1423745	-	185	32266985	gidB	HH1486	-	glucose-inhibited division protein B
1487	 36.70	0	1423781..1424878	-	365	32266986	queA	HH1487	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1488	 34.84	0	1424875..1425672	-	265	32266987	tatC	HH1488	-	Sec-independent protein secretion pathway component TatC
1489	 36.14	0	1425675..1426244	-	189	32266988	-	HH1489	-	sec-independent translocase
1490	 36.80	0	1426404..1427672	+	422	32266989	serS	HH1490	-	seryl-tRNA synthetase
1491	 35.10	0	1427685..1430168	+	827	32266990	-	HH1491	-	hypothetical protein
1492	 34.46	0	1430179..1430532	-	117	32266991	-	HH1492	-	hypothetical protein
1493	 37.77	0	1430783..1432066	+	427	32266992	gltA	HH1493	-	type II citrate synthase
1494	 34.08	0	1432130..1432666	+	178	32266993	rplY	HH1494	-	50S ribosomal protein L25/general stress protein Ctc
1495	 34.67	0	1432666..1433337	+	223	32266994	pth	HH1495	-	peptidyl-tRNA hydrolase
1496	 32.22	-1	1433340..1434419	+	359	32266995	-	HH1496	-	hypothetical protein
1497	 36.86	0	1434494..1435174	+	226	32266996	atpB	HH1497	-	F0F1 ATP synthase subunit A
1498	 34.83	0	1435161..1435760	+	199	32266997	-	HH1498	-	hypothetical protein
1499	 36.35	0	1435729..1437816	-	695	32266998	-	HH1499	-	hypothetical protein
1500	 34.37	0	1437912..1438781	+	289	32266999	-	HH1500	-	hypothetical protein
1501	 38.27	0	1438904..1439227	+	107	32267000	-	HH1501	-	hypothetical protein
1502	 34.81	0	1439273..1440082	-	269	32267001	-	HH1502	-	hypothetical protein
1503	 36.10	0	1440051..1441856	-	601	32267002	-	HH1503	-	hypothetical protein
1504	 38.74	0	1441879..1442784	-	301	32267003	-	HH1504	-	hypothetical protein
1505	 38.86	0	1443006..1444109	+	367	32267004	mpr	HH1505	-	putative ATP/GTP-binding protein
1506	 36.27	0	1444106..1445434	-	442	32267005	-	HH1506	-	hypothetical protein
1507	 36.31	0	1445971..1447245	+	424	32267006	lysA	HH1507	-	diaminopimelate decarboxylase
1508	 35.88	0	1447265..1448362	+	365	32267007	pheA	HH1508	-	chorismate mutase/prephenate dehydratase
1509	 34.01	0	1448391..1449278	+	295	32267008	-	HH1509	-	hypothetical protein
1510	 34.29	0	1449353..1450087	+	244	32267009	-	HH1510	-	hypothetical protein
1511	 36.91	0	1450091..1451068	+	325	32267010	-	HH1511	-	hypothetical protein
1512	 37.96	0	1451159..1452391	+	410	32267011	-	HH1512	-	hypothetical protein
1513	 40.48	+1	1452401..1453534	+	377	32267012	-	HH1513	-	hypothetical protein
1514	 36.54	0	1453537..1454409	+	290	32267013	-	HH1514	-	hypothetical protein
1515	 37.48	0	1454406..1455563	-	385	32267014	truD	HH1515	-	tRNA pseudouridine synthase D
1516	 38.36	0	1455566..1456600	-	344	32267015	alr	HH1516	-	alanine racemase
1517	 38.56	0	1456645..1456950	-	101	32267016	-	HH1517	-	cytochrome c553
1518	 38.44	0	1457046..1457633	-	195	32267017	recR	HH1518	-	recombination protein RecR
1519	 39.38	0	1457748..1458905	+	385	32267018	dnaJ_2	HH1519	-	co-chaperone and heat shock protein DnaJ
1520	 36.81	0	1458895..1459326	-	143	32267019	-	HH1520	-	hypothetical protein
1521	 34.98	0	1459358..1459903	-	181	32267020	-	HH1521	-	hypothetical protein
1522	 40.44	+1	1460142..1460957	-	271	32267021	-	HH1522	-	hypothetical protein
1523	 30.95	-1	1460961..1461254	-	97	32267022	-	HH1523	-	hypothetical protein
1524	 27.10	-2	1461318..1461686	-	122	32267023	-	HH1524	-	hypothetical protein
1525	 35.33	0	1461758..1462057	-	99	32267024	-	HH1525	-	hypothetical protein
1526	 36.72	0	1462173..1462880	-	235	32267025	-	HH1526	-	hypothetical protein
1527	 34.59	0	1462898..1463215	-	105	32267026	-	HH1527	-	hypothetical protein
1528	 39.69	+1	1463461..1464798	-	445	32267027	-	HH1528	-	hypothetical protein
1529	 38.15	0	1464820..1467849	-	1009	32267028	-	HH1529	-	hypothetical protein
1530	 34.34	0	1467923..1468615	-	230	32267029	-	HH1530	-	hypothetical protein
1531	 38.07	0	1468560..1469150	-	196	32267030	gmhA	HH1531	-	phosphoheptose isomerase
1532	 37.61	0	1469135..1470583	-	482	32267031	-	HH1532	-	hypothetical protein
1533	 33.93	0	1470607..1471614	-	335	32267032	-	HH1533	-	ADP-L-glycero-D-manno-heptose-6-epimerase
1534	 32.40	0	1471625..1472158	-	177	32267033	-	HH1534	-	hypothetical protein
1535	 38.02	0	1472392..1473138	-	248	32267034	-	HH1535	-	hypothetical protein
1536	 39.68	+1	1473145..1474074	-	309	32267035	prsA	HH1536	-	ribose-phosphate pyrophosphokinase
1537	 33.33	0	1474131..1474841	-	236	32267036	-	HH1537	-	hypothetical protein
1538	 25.81	-2	1474976..1475068	+	30	32267037	-	HH1538	-	hypothetical protein
1539	 37.02	0	1475123..1476586	+	487	32267038	engA	HH1539	-	GTP-binding protein EngA
1540	 41.09	+1	1476601..1477761	-	386	32267039	metK	HH1540	-	S-adenosylmethionine synthetase
1541	 38.31	0	1477980..1479989	+	669	32267040	-	HH1541	-	hypothetical protein
1542	 33.33	0	1480045..1480188	+	47	32267041	-	HH1542	-	hypothetical protein
1543	 33.84	0	1480257..1480847	+	196	32267042	-	HH1543	-	hypothetical protein
1544	 39.03	0	1480946..1481542	+	198	32267043	tsaA	HH1544	-	alkyl hydroperoxide reductase TsaA
1545	 39.29	0	1480949..1481569	-	206	32267044	-	HH1545	-	hypothetical protein
1546	 33.07	0	1481826..1482209	+	127	32267045	-	HH1546	-	hypothetical protein
1547	 36.61	0	1482209..1483858	+	549	32267046	actP	HH1547	-	acetate permease
1548	 38.39	0	1483878..1485854	-	658	32267047	uvrB	HH1548	-	excinuclease ABC subunit B
1549	 29.73	-1	1485924..1486145	+	73	32267048	-	HH1549	-	hypothetical protein
1550	 38.58	0	1486145..1486411	+	88	32267049	-	HH1550	-	hypothetical protein
1551	 37.57	0	1486408..1488321	+	637	32267050	priA	HH1551	-	primosome assembly protein PriA
1552	 34.01	0	1488377..1488817	+	146	32267051	-	HH1552	-	hypothetical protein
1553	 33.84	0	1488866..1489456	+	196	32267052	-	HH1553	-	hypothetical protein
1554	 38.75	0	1489459..1490049	+	196	32267053	fliL	HH1554	-	flagellar basal body-associated protein FliL
1555	 37.47	0	1490054..1490416	+	120	32267054	acpS	HH1555	-	4'-phosphopantetheinyl transferase
1556	 22.64	-2	1490409..1490567	-	52	32267055	-	HH1556	-	hypothetical protein
1557	 39.36	0	1490656..1491999	-	447	161546623	aroF	HH1557	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1558	 31.58	-1	1491941..1492054	-	37	32267057	-	HH1558	-	hypothetical protein
1559	 39.31	0	1492063..1492815	-	250	32267058	-	HH1559	-	oxidoreductase
1560	 34.62	0	1492812..1493819	-	335	32267059	-	HH1560	-	hypothetical protein
1561	 33.33	0	1493782..1494357	-	191	32267060	-	HH1561	-	hypothetical protein
1562	 20.59	-2	1494380..1494481	-	33	32267061	-	HH1562	-	hypothetical protein
1563	 35.69	0	1494552..1495316	-	254	32267062	-	HH1563	-	hypothetical protein
1564	 36.23	0	1495297..1497573	-	758	32267063	clpB	HH1564	-	ATP-dependent Clp protease ClpB
1565	 37.88	0	1497586..1497849	-	87	32267064	-	HH1565	-	hypothetical protein
1566	 32.29	0	1497851..1497946	+	31	32267065	-	HH1566	-	hypothetical protein
1567	 37.63	0	1498061..1498618	-	185	32267066	oorC	HH1567	-	2-oxoglutarate-acceptor oxidoreductase subunit OorC
1568	 38.53	0	1498620..1499447	-	275	32267067	oorB	HH1568	-	2-oxoglutarate-acceptor oxidoreductase subunit OorB
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.