IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1409	 30.77	-1	1347809..1348120	+	103	32266908	fliE	HH1409	-	flagellar hook-basal body protein FliE
1410	 36.68	0	1348129..1349922	+	597	32266909	-	HH1410	-	hypothetical protein
1411	 28.37	-2	1349931..1350071	+	46	32266910	-	HH1411	-	hypothetical protein
1412	 35.14	0	1350151..1350705	+	184	32266911	-	HH1412	-	hypothetical protein
1413	 32.60	0	1350702..1353566	-	954	32266912	-	HH1413	-	hypothetical protein
1414	 39.18	0	1353570..1354373	-	267	32266913	trpA	HH1414	-	tryptophan synthase
1415	 39.67	+1	1354518..1355780	+	420	32266914	trpB	HH1415	-	tryptophan synthase subunit beta
1416	 40.92	+1	1355794..1356162	-	122	32266915	-	HH1416	-	methionine sulfoxide reductase B
1417	 33.74	0	1356164..1357156	-	330	32266916	-	HH1417	-	hypothetical protein
1418	 41.68	+1	1357286..1360006	+	906	32266917	-	HH1418	-	hypothetical protein
1419	 27.71	-2	1360016..1360957	+	313	32266918	-	HH1419	-	hypothetical protein
1420	 27.10	-2	1360957..1363026	+	689	32266919	-	HH1420	-	hypothetical protein
1421	 36.33	0	1363026..1364294	+	422	32266920	-	HH1421	-	hypothetical protein
1422	 33.43	0	1364426..1365442	+	338	32266921	-	HH1422	-	hypothetical protein
1423	 44.75	+2	1365552..1366979	+	475	32266922	-	HH1423	-	type I restriction-modification system
1424	 37.16	0	1367061..1368368	+	435	32266923	-	HH1424	-	hypothetical protein
1425	 32.19	-1	1368440..1370017	+	525	32266924	-	HH1425	-	hypothetical protein
1426	 42.11	+1	1370098..1370940	+	280	32266925	-	HH1426	-	hypothetical protein
1427	 41.48	+1	1370990..1371775	+	261	32266926	-	HH1427	-	hypothetical protein
1428	 35.78	0	1371816..1373408	+	530	32266927	-	HH1428	-	hypothetical protein
1429	 34.48	0	1373504..1374199	+	231	32266928	-	HH1429	-	hypothetical protein
1430	 34.80	0	1374211..1374552	+	113	32266929	-	HH1430	-	hypothetical protein
1431	 28.53	-2	1374657..1374989	+	110	32266930	-	HH1431	-	hypothetical protein
1432	 33.14	0	1375002..1375514	+	170	32266931	-	HH1432	-	hypothetical protein
1433	 27.68	-2	1375515..1375691	+	58	32266932	-	HH1433	-	hypothetical protein
1434	 32.50	0	1376248..1379742	+	1164	32266933	-	HH1434	-	type I restriction/modification enzyme
1435	 34.72	0	1379811..1380461	+	216	32266934	-	HH1435	-	hypothetical protein
1436	 39.97	+1	1380629..1382962	+	777	32266935	-	HH1436	-	hypothetical protein
1437	 40.92	+1	1382959..1383591	+	210	32266936	-	HH1437	-	hypothetical protein
1438	 35.97	0	1383594..1384199	+	201	32266937	cysC	HH1438	-	adenylylsulfate kinase
1439	 37.68	0	1384199..1384957	+	252	32266938	-	HH1439	-	hypothetical protein
1440	 39.83	+1	1385005..1385805	+	266	32266939	cysQ	HH1440	-	hypothetical protein
1441	 36.64	0	1386017..1386409	-	130	32266940	-	HH1441	-	hypothetical protein
1442	 31.69	-1	1386465..1387922	-	485	32266941	-	HH1442	-	hypothetical protein
1443	 30.65	-1	1387897..1389909	-	670	32266942	-	HH1443	-	putative endonuclease
1444	 42.97	+2	1390108..1394235	+	1375	32266943	guaA	HH1444	-	guanosine monophosphate synthetase GuaA
1445	 32.11	-1	1394487..1394813	+	108	32266944	-	HH1445	-	hypothetical protein
1446	 35.92	0	1395180..1395875	+	231	32266945	cdtA	HH1446	-	cytolethal distending toxin CdtA
1447	 40.75	+1	1395895..1396716	+	273	32266946	cdtB	HH1447	-	cytolethal distending toxin CdtB
1448	 34.06	0	1396726..1397277	+	183	32266947	cdtC	HH1448	-	cytolethal distending toxin CdtC
1449	 36.30	0	1397252..1397521	+	89	32266948	-	HH1449	-	hypothetical protein
1450	 39.16	0	1397568..1398116	+	182	32266949	-	HH1450	-	hypothetical protein
1451	 41.20	+1	1398440..1398871	+	143	32266950	-	HH1451	-	hypothetical protein
1452	 42.54	+1	1398868..1399182	+	104	32266951	-	HH1452	-	hypothetical protein
1453	 26.67	-2	1399278..1399382	+	34	32266952	-	HH1453	-	hypothetical protein
1454	 43.44	+2	1399379..1400545	+	388	32266953	-	HH1454	-	hypothetical protein
1455	 36.80	0	1400613..1401536	-	307	32266954	-	HH1455	-	hypothetical protein
1456	 31.67	-1	1401533..1402252	-	239	32266955	-	HH1456	-	hypothetical protein
1457	 31.75	-1	1402252..1402944	-	230	32266956	-	HH1457	-	hypothetical protein
1458	 28.30	-2	1402947..1403522	-	191	32266957	-	HH1458	-	hypothetical protein
1459	 33.94	0	1403590..1403754	+	54	32266958	-	HH1459	-	hypothetical protein
1460	 44.38	+2	1403772..1404287	+	171	32266959	-	HH1460	-	hypothetical protein
1461	 44.55	+2	1404325..1405242	+	305	32266960	-	HH1461	-	hypothetical protein
1462	 41.69	+1	1405284..1406444	+	386	32266961	-	HH1462	-	aldo-keto reductase
1463	 35.80	0	1406581..1407066	-	161	32266962	-	HH1463	-	hypothetical protein
1464	 41.18	+1	1407211..1408713	+	500	32266963	-	HH1464	-	hypothetical protein
1465	 36.62	0	1408875..1409483	+	202	32266964	-	HH1465	-	hypothetical protein
1466	 33.33	0	1409556..1409666	-	36	32266965	-	HH1466	-	hypothetical protein
1467	 34.50	0	1409791..1410048	+	85	32266966	-	HH1467	-	hypothetical protein
1468	 39.22	0	1410045..1410554	+	169	32266967	-	HH1468	-	hypothetical protein
1469	 43.20	+2	1410599..1411216	+	205	32266968	-	HH1469	-	hypothetical protein
1470	 40.11	+1	1411334..1413265	+	643	32266969	-	HH1470	-	hypothetical protein
1471	 39.70	+1	1413597..1414475	+	292	32266970	-	HH1471	-	aldo-keto reductase
1472	 40.68	+1	1414566..1415150	+	194	32266971	mdaB	HH1472	-	putative modulator of drug activity MdaB
1473	 42.93	+1	1415203..1415952	+	249	32266972	-	HH1473	-	hypothetical protein
1474	 37.02	0	1415926..1416495	-	189	32266973	-	HH1474	-	hypothetical protein
1475	 38.44	0	1416672..1417043	-	123	32266974	-	HH1475	-	hypothetical protein
1476	 41.41	+1	1416895..1417290	-	131	32266975	-	HH1476	-	hypothetical protein
1477	 39.39	+1	1417378..1417476	+	32	32266976	-	HH1477	-	hypothetical protein
1478	 41.33	+1	1417559..1418596	+	345	32266977	-	HH1478	-	hypothetical protein
1479	 37.93	0	1418593..1419267	+	224	32266978	-	HH1479	-	hypothetical protein
1480	 39.94	+1	1419518..1420183	+	221	32266979	glnQ_2	HH1480	-	ABC-type amino-acid transporter
1481	 34.74	0	1420203..1420985	+	260	32266980	-	HH1481	-	bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein
1482	 37.87	0	1420990..1421739	+	249	32266981	-	HH1482	-	putative ABC-type amino-acid transporter permease protein
1483	 34.09	0	1421750..1422409	+	219	32266982	gltK	HH1483	-	putative ABC-type amino-acid transporter permease protein
1484	 32.85	0	1422524..1422940	-	138	32266983	-	HH1484	-	hypothetical protein
1485	 31.98	-1	1422937..1423158	-	73	32266984	-	HH1485	-	hypothetical protein
1486	 37.46	0	1423188..1423745	-	185	32266985	gidB	HH1486	-	glucose-inhibited division protein B
1487	 36.70	0	1423781..1424878	-	365	32266986	queA	HH1487	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1488	 34.84	0	1424875..1425672	-	265	32266987	tatC	HH1488	-	Sec-independent protein secretion pathway component TatC
1489	 36.14	0	1425675..1426244	-	189	32266988	-	HH1489	-	sec-independent translocase
1490	 36.80	0	1426404..1427672	+	422	32266989	serS	HH1490	-	seryl-tRNA synthetase
1491	 35.10	0	1427685..1430168	+	827	32266990	-	HH1491	-	hypothetical protein
1492	 34.46	0	1430179..1430532	-	117	32266991	-	HH1492	-	hypothetical protein
1493	 37.77	0	1430783..1432066	+	427	32266992	gltA	HH1493	-	type II citrate synthase
1494	 34.08	0	1432130..1432666	+	178	32266993	rplY	HH1494	-	50S ribosomal protein L25/general stress protein Ctc
1495	 34.67	0	1432666..1433337	+	223	32266994	pth	HH1495	-	peptidyl-tRNA hydrolase
1496	 32.22	-1	1433340..1434419	+	359	32266995	-	HH1496	-	hypothetical protein
1497	 36.86	0	1434494..1435174	+	226	32266996	atpB	HH1497	-	F0F1 ATP synthase subunit A
1498	 34.83	0	1435161..1435760	+	199	32266997	-	HH1498	-	hypothetical protein
1499	 36.35	0	1435729..1437816	-	695	32266998	-	HH1499	-	hypothetical protein
1500	 34.37	0	1437912..1438781	+	289	32266999	-	HH1500	-	hypothetical protein
1501	 38.27	0	1438904..1439227	+	107	32267000	-	HH1501	-	hypothetical protein
1502	 34.81	0	1439273..1440082	-	269	32267001	-	HH1502	-	hypothetical protein
1503	 36.10	0	1440051..1441856	-	601	32267002	-	HH1503	-	hypothetical protein
1504	 38.74	0	1441879..1442784	-	301	32267003	-	HH1504	-	hypothetical protein
1505	 38.86	0	1443006..1444109	+	367	32267004	mpr	HH1505	-	putative ATP/GTP-binding protein
1506	 36.27	0	1444106..1445434	-	442	32267005	-	HH1506	-	hypothetical protein
1507	 36.31	0	1445971..1447245	+	424	32267006	lysA	HH1507	-	diaminopimelate decarboxylase
1508	 35.88	0	1447265..1448362	+	365	32267007	pheA	HH1508	-	chorismate mutase/prephenate dehydratase
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.