IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1348	 38.10	0	1303366..1304205	-	279	32266847	hemK	HH1348	-	DNA methylase HemK
1349	 34.07	0	1304195..1305421	-	408	32266848	-	HH1349	-	zinc-metallo protease
1350	 37.65	0	1305554..1307176	+	540	32266849	pyrG	HH1350	-	CTP synthetase
1351	 38.88	0	1307193..1308761	+	522	32266850	recJ	HH1351	-	single-stranded DNA-specific exonuclease
1352	 35.64	0	1308775..1309554	-	259	32266851	-	HH1352	-	hypothetical protein
1353	 41.44	+1	1309759..1311090	+	443	32266852	purB	HH1353	-	adenylosuccinate lyase
1354	 38.00	0	1311068..1311646	-	192	32266853	-	HH1354	-	hypothetical protein
1355	 43.41	+2	1311652..1312266	-	204	32266854	pyrE	HH1355	-	orotate phosphoribosyltransferase
1356	 36.27	0	1312281..1312961	-	226	32266855	-	HH1356	-	hypothetical protein
1357	 33.93	0	1313105..1313611	+	168	32266856	-	HH1357	-	hypothetical protein
1358	 35.32	0	1313613..1315727	+	704	32266857	-	HH1358	-	DNA helicase II
1359	 33.99	0	1315724..1316641	+	305	32266858	flgA	HH1359	-	flagellar basal body P-ring biosynthesis protein FlgA
1360	 36.87	0	1316695..1317288	+	197	32266859	ubiD	HH1360	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1361	 35.54	0	1317288..1317785	+	165	32266860	coaD	HH1361	-	phosphopantetheine adenylyltransferase
1362	 35.88	0	1317785..1318372	+	195	32266861	tdk	HH1362	-	thymidylate kinase
1363	 35.78	0	1318376..1318987	+	203	32266862	-	HH1363	-	hypothetical protein
1364	 37.33	0	1319075..1320601	+	508	32266863	flaA_1	HH1364	-	flagellin A
1365	 33.64	0	1320660..1320986	-	108	32266864	-	HH1365	-	hypothetical protein
1366	 39.61	+1	1321061..1321921	+	286	32266865	folD	HH1366	-	methylenetetrahydrofolate dehydrogenase
1367	 36.19	0	1321918..1322931	+	337	32266866	lepB	HH1367	-	signal peptidase I
1368	 41.44	+1	1322943..1323386	+	147	32266867	rpiB	HH1368	-	ribose-5-phosphate isomerase B
1369	 34.75	0	1323402..1323755	+	117	32266868	-	HH1369	-	hypothetical protein
1370	 36.50	0	1323783..1324319	+	178	32266869	apt	HH1370	-	adenine phosphoribosyltransferase
1371	 35.70	0	1324319..1325080	+	253	32266870	-	HH1371	-	hypothetical protein
1372	 38.95	0	1325120..1326544	+	474	32266871	pepA	HH1372	-	leucyl aminopeptidase
1373	 38.87	0	1326545..1327645	+	366	32266872	-	HH1373	-	translation-associated GTPase
1374	 30.70	-1	1327841..1328068	-	75	32266873	-	HH1374	-	hypothetical protein
1375	 36.24	0	1328065..1328511	-	148	32266874	-	HH1375	-	hypothetical protein
1376	 36.95	0	1328508..1329365	-	285	32266875	-	HH1376	-	hypothetical protein
1377	 41.03	+1	1329706..1330017	+	103	32266876	rpsJ	HH1377	-	30S ribosomal protein S10
1378	 41.28	+1	1330073..1330651	+	192	161546624	rplC	HH1378	-	50S ribosomal protein L3
1379	 37.02	0	1330663..1331286	+	207	32266878	rplD	HH1379	-	50S ribosomal protein L4
1380	 35.11	0	1331287..1331568	+	93	32266879	rplW	HH1380	-	50S ribosomal protein L23
1381	 39.49	+1	1331578..1332405	+	275	32266880	rplB	HH1381	-	50S ribosomal protein L2
1382	 36.17	0	1332416..1332697	+	93	32266881	rpsS	HH1382	-	30S ribosomal protein S19
1383	 38.05	0	1332707..1333279	+	190	32266882	rplV	HH1383	-	50S ribosomal protein L22
1384	 39.10	0	1333282..1333992	+	236	32266883	rpsC	HH1384	-	30S ribosomal protein S3
1385	 39.91	+1	1333996..1334421	+	141	32266884	rplP	HH1385	-	50S ribosomal protein L16
1386	 32.28	0	1334408..1334596	+	62	32266885	rpmC	HH1386	-	50S ribosomal protein L29
1387	 32.96	0	1334600..1334866	+	88	32266886	rpsQ	HH1387	-	30S ribosomal protein S17
1388	 40.38	+1	1334863..1335231	+	122	32266887	rplN	HH1388	-	50S ribosomal protein L14
1389	 36.71	0	1335231..1335467	+	78	32266888	rplX	HH1389	-	50S ribosomal protein L24
1390	 35.53	0	1335467..1336012	+	181	32266889	rplE	HH1390	-	50S ribosomal protein L5
1391	 40.35	+1	1336033..1336146	+	37	32266890	-	HH1391	-	hypothetical protein
1392	 37.88	0	1336209..1336604	+	131	32266891	rpsH	HH1392	-	30S ribosomal protein S8
1393	 38.36	0	1336614..1337150	+	178	32266892	rplF	HH1393	-	50S ribosomal protein L6
1394	 35.29	0	1337166..1337522	+	118	32266893	rplR	HH1394	-	50S ribosomal protein L18
1395	 36.28	0	1337532..1337972	+	146	32266894	rpsE	HH1395	-	30S ribosomal protein S5
1396	 35.32	0	1337983..1338384	+	133	32266895	rplO	HH1396	-	50S ribosomal protein L15
1397	 35.65	0	1338381..1339631	+	416	32266896	secY	HH1397	-	preprotein translocase subunit SecY
1398	 37.29	0	1339633..1340391	+	252	32266897	map	HH1398	-	methionine aminopeptidase
1399	 37.44	0	1340394..1340612	+	72	32266898	infA	HH1399	-	translation initiation factor IF-1
1400	 36.36	0	1340816..1341178	+	120	32266899	rpsM	HH1400	-	30S ribosomal protein S13
1401	 40.20	+1	1341188..1341580	+	130	32266900	rpsK	HH1401	-	30S ribosomal protein S11
1402	 40.99	+1	1341591..1342217	+	208	32266901	rpsD	HH1402	-	30S ribosomal protein S4
1403	 36.02	0	1342245..1343249	+	334	32266902	rpoA	HH1403	-	DNA-directed RNA polymerase subunit alpha
1404	 37.89	0	1343264..1343614	+	116	32266903	rplQ	HH1404	-	50S ribosomal protein L17
1405	 38.30	0	1344048..1345619	+	523	32266904	-	HH1405	-	hypothetical protein
1406	 36.81	0	1345664..1346785	+	373	32266905	-	HH1406	-	hypothetical protein
1407	 37.70	0	1346855..1347289	+	144	32266906	flgB	HH1407	-	flagellar basal body rod protein FlgB
1408	 38.41	0	1347308..1347799	+	163	32266907	flgC	HH1408	-	flagellar basal body rod protein FlgC
1409	 30.77	-1	1347809..1348120	+	103	32266908	fliE	HH1409	-	flagellar hook-basal body protein FliE
1410	 36.68	0	1348129..1349922	+	597	32266909	-	HH1410	-	hypothetical protein
1411	 28.37	-2	1349931..1350071	+	46	32266910	-	HH1411	-	hypothetical protein
1412	 35.14	0	1350151..1350705	+	184	32266911	-	HH1412	-	hypothetical protein
1413	 32.60	0	1350702..1353566	-	954	32266912	-	HH1413	-	hypothetical protein
1414	 39.18	0	1353570..1354373	-	267	32266913	trpA	HH1414	-	tryptophan synthase
1415	 39.67	+1	1354518..1355780	+	420	32266914	trpB	HH1415	-	tryptophan synthase subunit beta
1416	 40.92	+1	1355794..1356162	-	122	32266915	-	HH1416	-	methionine sulfoxide reductase B
1417	 33.74	0	1356164..1357156	-	330	32266916	-	HH1417	-	hypothetical protein
1418	 41.68	+1	1357286..1360006	+	906	32266917	-	HH1418	-	hypothetical protein
1419	 27.71	-2	1360016..1360957	+	313	32266918	-	HH1419	-	hypothetical protein
1420	 27.10	-2	1360957..1363026	+	689	32266919	-	HH1420	-	hypothetical protein
1421	 36.33	0	1363026..1364294	+	422	32266920	-	HH1421	-	hypothetical protein
1422	 33.43	0	1364426..1365442	+	338	32266921	-	HH1422	-	hypothetical protein
1423	 44.75	+2	1365552..1366979	+	475	32266922	-	HH1423	-	type I restriction-modification system
1424	 37.16	0	1367061..1368368	+	435	32266923	-	HH1424	-	hypothetical protein
1425	 32.19	-1	1368440..1370017	+	525	32266924	-	HH1425	-	hypothetical protein
1426	 42.11	+1	1370098..1370940	+	280	32266925	-	HH1426	-	hypothetical protein
1427	 41.48	+1	1370990..1371775	+	261	32266926	-	HH1427	-	hypothetical protein
1428	 35.78	0	1371816..1373408	+	530	32266927	-	HH1428	-	hypothetical protein
1429	 34.48	0	1373504..1374199	+	231	32266928	-	HH1429	-	hypothetical protein
1430	 34.80	0	1374211..1374552	+	113	32266929	-	HH1430	-	hypothetical protein
1431	 28.53	-2	1374657..1374989	+	110	32266930	-	HH1431	-	hypothetical protein
1432	 33.14	0	1375002..1375514	+	170	32266931	-	HH1432	-	hypothetical protein
1433	 27.68	-2	1375515..1375691	+	58	32266932	-	HH1433	-	hypothetical protein
1434	 32.50	0	1376248..1379742	+	1164	32266933	-	HH1434	-	type I restriction/modification enzyme
1435	 34.72	0	1379811..1380461	+	216	32266934	-	HH1435	-	hypothetical protein
1436	 39.97	+1	1380629..1382962	+	777	32266935	-	HH1436	-	hypothetical protein
1437	 40.92	+1	1382959..1383591	+	210	32266936	-	HH1437	-	hypothetical protein
1438	 35.97	0	1383594..1384199	+	201	32266937	cysC	HH1438	-	adenylylsulfate kinase
1439	 37.68	0	1384199..1384957	+	252	32266938	-	HH1439	-	hypothetical protein
1440	 39.83	+1	1385005..1385805	+	266	32266939	cysQ	HH1440	-	hypothetical protein
1441	 36.64	0	1386017..1386409	-	130	32266940	-	HH1441	-	hypothetical protein
1442	 31.69	-1	1386465..1387922	-	485	32266941	-	HH1442	-	hypothetical protein
1443	 30.65	-1	1387897..1389909	-	670	32266942	-	HH1443	-	putative endonuclease
1444	 42.97	+2	1390108..1394235	+	1375	32266943	guaA	HH1444	-	guanosine monophosphate synthetase GuaA
1445	 32.11	-1	1394487..1394813	+	108	32266944	-	HH1445	-	hypothetical protein
1446	 35.92	0	1395180..1395875	+	231	32266945	cdtA	HH1446	-	cytolethal distending toxin CdtA
1447	 40.75	+1	1395895..1396716	+	273	32266946	cdtB	HH1447	-	cytolethal distending toxin CdtB
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.