IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1291	 40.16	+1	1251473..1252687	+	404	32266790	argJ	HH1291	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1292	 36.49	0	1252803..1253024	+	73	32266791	-	HH1292	-	hypothetical protein
1293	 30.95	-1	1253203..1253328	+	41	32266792	-	HH1293	-	hypothetical protein
1294	 36.84	0	1253514..1254881	-	455	32266793	-	HH1294	-	fibronectin/fibrinogen-binding protein
1295	 37.35	0	1254904..1256445	-	513	32266794	recN	HH1295	-	DNA repair protein RecN
1296	 38.74	0	1256460..1257365	-	301	32266795	-	HH1296	-	hypothetical protein
1297	 37.11	0	1257374..1257982	-	202	32266796	-	HH1297	-	hypothetical protein
1298	 43.44	+2	1258222..1259448	+	408	32266797	-	HH1298	-	putative inner membrane protein
1299	 41.67	+1	1259460..1259699	+	79	32266798	-	HH1299	-	hypothetical protein
1300	 34.15	0	1259771..1259893	+	40	32266799	-	HH1300	-	hypothetical protein
1301	 34.30	0	1259972..1260490	+	172	32266800	-	HH1301	-	hypothetical protein
1302	 34.29	0	1260715..1261971	+	418	32266801	-	HH1302	-	hypothetical protein
1303	 37.16	0	1262036..1262218	+	60	32266802	-	HH1303	-	hypothetical protein
1304	 36.27	0	1262296..1262907	+	203	32266803	-	HH1304	-	hypothetical protein
1305	 35.84	0	1262964..1264160	-	398	32266804	-	HH1305	-	hypothetical protein
1306	 33.99	0	1264183..1265091	-	302	32266805	-	HH1306	-	hypothetical protein
1307	 36.90	0	1265215..1265691	-	158	32266806	-	HH1307	-	hypothetical protein
1308	 37.73	0	1265773..1266978	-	401	32266807	ackA	HH1308	-	acetate kinase
1309	 40.06	+1	1266998..1267993	-	331	32266808	pta	HH1309	-	phosphotransacetylase
1310	 33.18	0	1268185..1270191	-	668	32266809	-	HH1310	-	methyl-accepting chemotaxis protein
1311	 38.23	0	1270285..1271631	-	448	32266810	-	HH1311	-	hypothetical protein
1312	 38.55	0	1271792..1272385	+	197	32266811	-	HH1312	-	hypothetical protein
1313	 39.35	0	1272382..1273212	-	276	32266812	-	HH1313	-	enoyl-(acyl carrier protein) reductase
1314	 36.43	0	1273345..1273731	+	128	32266813	-	HH1314	-	hypothetical protein
1315	 37.71	0	1273743..1274450	-	235	32266814	tpiA	HH1315	-	triosephosphate isomerase
1316	 36.06	0	1274627..1275688	+	353	32266815	yhjA	HH1316	-	cytochrome c551 peroxidase
1317	 36.66	0	1275810..1278548	+	912	32266816	polA	HH1317	-	DNA polymerase I
1318	 33.33	0	1278675..1278980	+	101	32266817	-	HH1318	-	hypothetical protein
1319	 38.78	0	1279260..1280435	-	391	32266818	-	HH1319	-	hypothetical protein
1320	 39.43	+1	1280432..1280710	-	92	32266819	flhB_2	HH1320	-	flagellar basal body protein FlhB
1321	 39.12	0	1280719..1281357	-	212	32266820	ribC	HH1321	-	riboflavin synthase subunit alpha
1322	 37.59	0	1281447..1282244	+	265	32266821	-	HH1322	-	hypothetical protein
1323	 36.44	0	1282265..1283389	+	374	32266822	dniR	HH1323	-	hypothetical protein
1324	 38.02	0	1283404..1284300	+	298	32266823	rlpA	HH1324	-	rare lipoprotein A
1325	 39.22	0	1284326..1284937	+	203	32266824	hisB	HH1325	-	imidazoleglycerol-phosphate dehydratase
1326	 35.96	0	1284934..1285428	+	164	32266825	-	HH1326	-	hypothetical protein
1327	 31.88	-1	1285394..1285942	+	182	32266826	-	HH1327	-	hypothetical protein
1328	 33.76	0	1285942..1286412	+	156	32266827	-	HH1328	-	hypothetical protein
1329	 35.28	0	1286457..1287125	+	222	32266828	-	HH1329	-	GTPase EngB
1330	 37.15	0	1287115..1287585	+	156	32266829	-	HH1330	-	acetyltransferase
1331	 32.67	0	1287549..1288001	+	150	32266830	-	HH1331	-	hypothetical protein
1332	 36.63	0	1287998..1289785	+	595	32266831	-	HH1332	-	penicillin-binding protein
1333	 36.04	0	1289800..1290798	+	332	32266832	flmA	HH1333	-	flagellar glycosylation protein FlmA
1334	 34.14	0	1290872..1291366	+	164	32266833	-	HH1334	-	ferritin
1335	 37.68	0	1291455..1292696	+	413	32266834	dfp	HH1335	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1336	 35.11	0	1292693..1293424	+	243	32266835	-	HH1336	-	hypothetical protein
1337	 35.52	0	1293458..1295563	-	701	32266836	-	HH1337	-	hypothetical protein
1338	 33.86	0	1295666..1296043	-	125	32266837	-	HH1338	-	hypothetical protein
1339	 32.32	0	1296081..1296179	+	32	32266838	-	HH1339	-	hypothetical protein
1340	 35.34	0	1296137..1297084	-	315	32266839	-	HH1340	-	hypothetical protein
1341	 32.66	0	1297062..1298105	-	347	32266840	-	HH1341	-	hypothetical protein
1342	 36.65	0	1298124..1300055	-	643	32266841	metG	HH1342	-	methionyl-tRNA synthetase
1343	 35.32	0	1300075..1300275	-	66	32266842	-	HH1343	-	hypothetical protein
1344	 37.62	0	1300268..1301107	-	279	32266843	fbp	HH1344	-	fructose-1,6-bisphosphatase
1345	 33.91	0	1301155..1301850	-	231	32266844	-	HH1345	-	hypothetical protein
1346	 36.87	0	1301932..1302582	+	216	32266845	rpe	HH1346	-	ribulose-phosphate 3-epimerase
1347	 35.58	0	1302588..1303388	+	266	32266846	dnaQ	HH1347	-	DNA polymerase III subunit epsilon
1348	 38.10	0	1303366..1304205	-	279	32266847	hemK	HH1348	-	DNA methylase HemK
1349	 34.07	0	1304195..1305421	-	408	32266848	-	HH1349	-	zinc-metallo protease
1350	 37.65	0	1305554..1307176	+	540	32266849	pyrG	HH1350	-	CTP synthetase
1351	 38.88	0	1307193..1308761	+	522	32266850	recJ	HH1351	-	single-stranded DNA-specific exonuclease
1352	 35.64	0	1308775..1309554	-	259	32266851	-	HH1352	-	hypothetical protein
1353	 41.44	+1	1309759..1311090	+	443	32266852	purB	HH1353	-	adenylosuccinate lyase
1354	 38.00	0	1311068..1311646	-	192	32266853	-	HH1354	-	hypothetical protein
1355	 43.41	+2	1311652..1312266	-	204	32266854	pyrE	HH1355	-	orotate phosphoribosyltransferase
1356	 36.27	0	1312281..1312961	-	226	32266855	-	HH1356	-	hypothetical protein
1357	 33.93	0	1313105..1313611	+	168	32266856	-	HH1357	-	hypothetical protein
1358	 35.32	0	1313613..1315727	+	704	32266857	-	HH1358	-	DNA helicase II
1359	 33.99	0	1315724..1316641	+	305	32266858	flgA	HH1359	-	flagellar basal body P-ring biosynthesis protein FlgA
1360	 36.87	0	1316695..1317288	+	197	32266859	ubiD	HH1360	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1361	 35.54	0	1317288..1317785	+	165	32266860	coaD	HH1361	-	phosphopantetheine adenylyltransferase
1362	 35.88	0	1317785..1318372	+	195	32266861	tdk	HH1362	-	thymidylate kinase
1363	 35.78	0	1318376..1318987	+	203	32266862	-	HH1363	-	hypothetical protein
1364	 37.33	0	1319075..1320601	+	508	32266863	flaA_1	HH1364	-	flagellin A
1365	 33.64	0	1320660..1320986	-	108	32266864	-	HH1365	-	hypothetical protein
1366	 39.61	+1	1321061..1321921	+	286	32266865	folD	HH1366	-	methylenetetrahydrofolate dehydrogenase
1367	 36.19	0	1321918..1322931	+	337	32266866	lepB	HH1367	-	signal peptidase I
1368	 41.44	+1	1322943..1323386	+	147	32266867	rpiB	HH1368	-	ribose-5-phosphate isomerase B
1369	 34.75	0	1323402..1323755	+	117	32266868	-	HH1369	-	hypothetical protein
1370	 36.50	0	1323783..1324319	+	178	32266869	apt	HH1370	-	adenine phosphoribosyltransferase
1371	 35.70	0	1324319..1325080	+	253	32266870	-	HH1371	-	hypothetical protein
1372	 38.95	0	1325120..1326544	+	474	32266871	pepA	HH1372	-	leucyl aminopeptidase
1373	 38.87	0	1326545..1327645	+	366	32266872	-	HH1373	-	translation-associated GTPase
1374	 30.70	-1	1327841..1328068	-	75	32266873	-	HH1374	-	hypothetical protein
1375	 36.24	0	1328065..1328511	-	148	32266874	-	HH1375	-	hypothetical protein
1376	 36.95	0	1328508..1329365	-	285	32266875	-	HH1376	-	hypothetical protein
1377	 41.03	+1	1329706..1330017	+	103	32266876	rpsJ	HH1377	-	30S ribosomal protein S10
1378	 41.28	+1	1330073..1330651	+	192	161546624	rplC	HH1378	-	50S ribosomal protein L3
1379	 37.02	0	1330663..1331286	+	207	32266878	rplD	HH1379	-	50S ribosomal protein L4
1380	 35.11	0	1331287..1331568	+	93	32266879	rplW	HH1380	-	50S ribosomal protein L23
1381	 39.49	+1	1331578..1332405	+	275	32266880	rplB	HH1381	-	50S ribosomal protein L2
1382	 36.17	0	1332416..1332697	+	93	32266881	rpsS	HH1382	-	30S ribosomal protein S19
1383	 38.05	0	1332707..1333279	+	190	32266882	rplV	HH1383	-	50S ribosomal protein L22
1384	 39.10	0	1333282..1333992	+	236	32266883	rpsC	HH1384	-	30S ribosomal protein S3
1385	 39.91	+1	1333996..1334421	+	141	32266884	rplP	HH1385	-	50S ribosomal protein L16
1386	 32.28	0	1334408..1334596	+	62	32266885	rpmC	HH1386	-	50S ribosomal protein L29
1387	 32.96	0	1334600..1334866	+	88	32266886	rpsQ	HH1387	-	30S ribosomal protein S17
1388	 40.38	+1	1334863..1335231	+	122	32266887	rplN	HH1388	-	50S ribosomal protein L14
1389	 36.71	0	1335231..1335467	+	78	32266888	rplX	HH1389	-	50S ribosomal protein L24
1390	 35.53	0	1335467..1336012	+	181	32266889	rplE	HH1390	-	50S ribosomal protein L5
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.