IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1249	 39.97	+1	1212762..1213469	+	235	32266748	ung	HH1249	-	uracil-DNA glycosylase
1250	 34.81	0	1213476..1215173	-	565	32266749	kefB_2	HH1250	-	glutathione-regulated potassium-efflux system protein KefB
1251	 32.78	0	1215345..1216604	+	419	32266750	-	HH1251	-	hypothetical protein
1252	 34.62	0	1216753..1217451	+	232	32266751	-	HH1252	-	hypothetical protein
1253	 36.00	0	1217538..1217687	-	49	32266752	-	HH1253	-	hypothetical protein
1254	 33.08	0	1217707..1218495	+	262	32266753	-	HH1254	-	hypothetical protein
1255	 34.43	0	1218550..1219821	+	423	32266754	-	HH1255	-	hypothetical protein
1256	 37.09	0	1219927..1221390	+	487	32266755	fixN	HH1256	-	cb-type cytochrome C oxidase subunit I
1257	 38.87	0	1221406..1222146	+	246	32266756	fixO	HH1257	-	cb-type cytochrome C oxidase subunit II
1258	 29.87	-1	1222143..1222373	+	76	32266757	fixQ	HH1258	-	cb-type cytochrome C oxidase subunit IV
1259	 37.57	0	1222370..1223242	+	290	32266758	fixP	HH1259	-	cb-type cytochrome C oxidase subunit III
1260	 37.31	0	1223254..1223454	+	66	32266759	-	HH1260	-	hypothetical protein
1261	 32.41	0	1223464..1223571	+	35	32266760	-	HH1261	-	hypothetical protein
1262	 33.78	0	1223575..1224249	+	224	32266761	-	HH1262	-	hypothetical protein
1263	 32.07	-1	1224266..1224898	+	210	32266762	-	HH1263	-	hypothetical protein
1264	 34.67	0	1224908..1225207	+	99	32266763	-	HH1264	-	hypothetical protein
1265	 38.69	0	1225207..1225971	+	254	32266764	-	HH1265	-	hypothetical protein
1266	 38.84	0	1226034..1226378	+	114	32266765	-	HH1266	-	hypothetical protein
1267	 35.35	0	1226460..1227650	+	396	32266766	-	HH1267	-	hypothetical protein
1268	 36.19	0	1227662..1230562	-	966	32266767	dld	HH1268	-	hypothetical protein
1269	 36.21	0	1230614..1231030	-	138	32266768	-	HH1269	-	hypothetical protein
1270	 36.70	0	1231084..1234740	-	1218	32266769	dnaE	HH1270	-	DNA polymerase III subunit alpha
1271	 35.11	0	1234897..1236300	+	467	32266770	-	HH1271	-	hypothetical protein
1272	 37.32	0	1236297..1237424	-	375	32266771	nusA	HH1272	-	transcription elongation factor NusA
1273	 31.80	-1	1237600..1237860	+	86	32266772	-	HH1273	-	hypothetical protein
1274	 36.86	0	1237945..1239276	+	443	32266773	-	HH1274	-	hypothetical protein
1275	 36.74	0	1239270..1239914	+	214	32266774	-	HH1275	-	hypothetical protein
1276	 36.31	0	1239977..1241017	+	346	32266775	-	HH1276	-	hypothetical protein
1277	 30.78	-1	1241021..1241569	+	182	32266776	-	HH1277	-	hypothetical protein
1278	 31.10	-1	1241562..1242143	+	193	32266777	-	HH1278	-	hypothetical protein
1279	 37.21	0	1242153..1243106	+	317	32266778	mraW	HH1279	-	S-adenosyl-methyltransferase MraW
1280	 31.44	-1	1243107..1243475	+	122	32266779	-	HH1280	-	hypothetical protein
1281	 38.38	0	1243550..1243648	+	32	32266780	-	HH1281	-	hypothetical protein
1282	 37.82	0	1243745..1244680	+	311	161546625	fabD	HH1282	-	acyl-carrier-protein S-malonyltransferase
1283	 37.20	0	1244695..1245393	+	232	32266782	-	HH1283	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1284	 36.03	0	1245405..1245923	+	172	32266783	-	HH1284	-	hypothetical protein
1285	 39.28	0	1245933..1246403	+	156	32266784	-	HH1285	-	hypothetical protein
1286	 35.68	0	1246804..1247655	-	283	32266785	-	HH1286	-	hypothetical protein
1287	 35.84	0	1247726..1249081	+	451	32266786	-	HH1287	-	hypothetical protein
1288	 40.41	+1	1249103..1250077	+	324	32266787	-	HH1288	-	hypothetical protein
1289	 35.98	0	1250147..1250335	+	62	32266788	rpmB	HH1289	-	50S ribosomal protein L28
1290	 36.70	0	1250353..1251480	+	375	32266789	-	HH1290	-	hypothetical protein
1291	 40.16	+1	1251473..1252687	+	404	32266790	argJ	HH1291	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1292	 36.49	0	1252803..1253024	+	73	32266791	-	HH1292	-	hypothetical protein
1293	 30.95	-1	1253203..1253328	+	41	32266792	-	HH1293	-	hypothetical protein
1294	 36.84	0	1253514..1254881	-	455	32266793	-	HH1294	-	fibronectin/fibrinogen-binding protein
1295	 37.35	0	1254904..1256445	-	513	32266794	recN	HH1295	-	DNA repair protein RecN
1296	 38.74	0	1256460..1257365	-	301	32266795	-	HH1296	-	hypothetical protein
1297	 37.11	0	1257374..1257982	-	202	32266796	-	HH1297	-	hypothetical protein
1298	 43.44	+2	1258222..1259448	+	408	32266797	-	HH1298	-	putative inner membrane protein
1299	 41.67	+1	1259460..1259699	+	79	32266798	-	HH1299	-	hypothetical protein
1300	 34.15	0	1259771..1259893	+	40	32266799	-	HH1300	-	hypothetical protein
1301	 34.30	0	1259972..1260490	+	172	32266800	-	HH1301	-	hypothetical protein
1302	 34.29	0	1260715..1261971	+	418	32266801	-	HH1302	-	hypothetical protein
1303	 37.16	0	1262036..1262218	+	60	32266802	-	HH1303	-	hypothetical protein
1304	 36.27	0	1262296..1262907	+	203	32266803	-	HH1304	-	hypothetical protein
1305	 35.84	0	1262964..1264160	-	398	32266804	-	HH1305	-	hypothetical protein
1306	 33.99	0	1264183..1265091	-	302	32266805	-	HH1306	-	hypothetical protein
1307	 36.90	0	1265215..1265691	-	158	32266806	-	HH1307	-	hypothetical protein
1308	 37.73	0	1265773..1266978	-	401	32266807	ackA	HH1308	-	acetate kinase
1309	 40.06	+1	1266998..1267993	-	331	32266808	pta	HH1309	-	phosphotransacetylase
1310	 33.18	0	1268185..1270191	-	668	32266809	-	HH1310	-	methyl-accepting chemotaxis protein
1311	 38.23	0	1270285..1271631	-	448	32266810	-	HH1311	-	hypothetical protein
1312	 38.55	0	1271792..1272385	+	197	32266811	-	HH1312	-	hypothetical protein
1313	 39.35	0	1272382..1273212	-	276	32266812	-	HH1313	-	enoyl-(acyl carrier protein) reductase
1314	 36.43	0	1273345..1273731	+	128	32266813	-	HH1314	-	hypothetical protein
1315	 37.71	0	1273743..1274450	-	235	32266814	tpiA	HH1315	-	triosephosphate isomerase
1316	 36.06	0	1274627..1275688	+	353	32266815	yhjA	HH1316	-	cytochrome c551 peroxidase
1317	 36.66	0	1275810..1278548	+	912	32266816	polA	HH1317	-	DNA polymerase I
1318	 33.33	0	1278675..1278980	+	101	32266817	-	HH1318	-	hypothetical protein
1319	 38.78	0	1279260..1280435	-	391	32266818	-	HH1319	-	hypothetical protein
1320	 39.43	+1	1280432..1280710	-	92	32266819	flhB_2	HH1320	-	flagellar basal body protein FlhB
1321	 39.12	0	1280719..1281357	-	212	32266820	ribC	HH1321	-	riboflavin synthase subunit alpha
1322	 37.59	0	1281447..1282244	+	265	32266821	-	HH1322	-	hypothetical protein
1323	 36.44	0	1282265..1283389	+	374	32266822	dniR	HH1323	-	hypothetical protein
1324	 38.02	0	1283404..1284300	+	298	32266823	rlpA	HH1324	-	rare lipoprotein A
1325	 39.22	0	1284326..1284937	+	203	32266824	hisB	HH1325	-	imidazoleglycerol-phosphate dehydratase
1326	 35.96	0	1284934..1285428	+	164	32266825	-	HH1326	-	hypothetical protein
1327	 31.88	-1	1285394..1285942	+	182	32266826	-	HH1327	-	hypothetical protein
1328	 33.76	0	1285942..1286412	+	156	32266827	-	HH1328	-	hypothetical protein
1329	 35.28	0	1286457..1287125	+	222	32266828	-	HH1329	-	GTPase EngB
1330	 37.15	0	1287115..1287585	+	156	32266829	-	HH1330	-	acetyltransferase
1331	 32.67	0	1287549..1288001	+	150	32266830	-	HH1331	-	hypothetical protein
1332	 36.63	0	1287998..1289785	+	595	32266831	-	HH1332	-	penicillin-binding protein
1333	 36.04	0	1289800..1290798	+	332	32266832	flmA	HH1333	-	flagellar glycosylation protein FlmA
1334	 34.14	0	1290872..1291366	+	164	32266833	-	HH1334	-	ferritin
1335	 37.68	0	1291455..1292696	+	413	32266834	dfp	HH1335	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1336	 35.11	0	1292693..1293424	+	243	32266835	-	HH1336	-	hypothetical protein
1337	 35.52	0	1293458..1295563	-	701	32266836	-	HH1337	-	hypothetical protein
1338	 33.86	0	1295666..1296043	-	125	32266837	-	HH1338	-	hypothetical protein
1339	 32.32	0	1296081..1296179	+	32	32266838	-	HH1339	-	hypothetical protein
1340	 35.34	0	1296137..1297084	-	315	32266839	-	HH1340	-	hypothetical protein
1341	 32.66	0	1297062..1298105	-	347	32266840	-	HH1341	-	hypothetical protein
1342	 36.65	0	1298124..1300055	-	643	32266841	metG	HH1342	-	methionyl-tRNA synthetase
1343	 35.32	0	1300075..1300275	-	66	32266842	-	HH1343	-	hypothetical protein
1344	 37.62	0	1300268..1301107	-	279	32266843	fbp	HH1344	-	fructose-1,6-bisphosphatase
1345	 33.91	0	1301155..1301850	-	231	32266844	-	HH1345	-	hypothetical protein
1346	 36.87	0	1301932..1302582	+	216	32266845	rpe	HH1346	-	ribulose-phosphate 3-epimerase
1347	 35.58	0	1302588..1303388	+	266	32266846	dnaQ	HH1347	-	DNA polymerase III subunit epsilon
1348	 38.10	0	1303366..1304205	-	279	32266847	hemK	HH1348	-	DNA methylase HemK
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.