IslandPathversion 1.0

IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.80 STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1182	 37.93	0	1147001..1147783	+	260	32266681	lpxA	HH1182	-	UDP-N-acetylglucosamine acyltransferase
1183	 34.50	0	1147776..1149056	+	426	32266682	clpX	HH1183	-	ATP-dependent protease ATP-binding subunit
1184	 41.64	+1	1149139..1150173	+	344	32266683	mreB	HH1184	-	rod shape-determining protein MreB
1185	 35.36	0	1150182..1151069	+	295	32266684	mreC	HH1185	-	rod shape-determining protein MreC
1186	 35.07	0	1150987..1153290	+	767	32266685	-	HH1186	-	hypothetical protein
1187	 37.98	0	1153450..1154892	+	480	32266686	-	HH1187	-	hypothetical protein
1188	 37.58	0	1154913..1156160	+	415	32266687	-	HH1188	-	hypothetical protein
1189	 36.00	0	1156157..1157095	-	312	32266688	-	HH1189	-	hypothetical protein
1190	 38.52	0	1157210..1160002	+	930	32266689	ileS	HH1190	-	isoleucyl-tRNA synthetase
1191	 38.10	0	1160044..1160190	+	48	32266690	-	HH1191	-	hypothetical protein
1192	 35.62	0	1160206..1160730	-	174	32266691	-	HH1192	-	hypothetical protein
1193	 35.44	0	1160896..1161228	+	110	32266692	-	HH1193	-	hypothetical protein
1194	 28.85	-1	1161212..1161523	+	103	32266693	-	HH1194	-	hypothetical protein
1195	 30.39	-1	1161593..1162441	+	282	32266694	-	HH1195	-	hypothetical protein
1196	 38.05	0	1162683..1164887	-	734	32266695	-	HH1196	-	isocitrate dehydrogenase
1197	 37.14	0	1165034..1165243	-	69	32266696	-	HH1197	-	hypothetical protein
1198	 38.49	0	1165389..1166435	-	348	32266697	-	HH1198	-	hypothetical protein
1199	 36.29	0	1166413..1168071	-	552	161546626	dnaG	HH1199	-	DNA primase
1200	 34.07	0	1168356..1168628	+	90	32266699	groES	HH1200	-	co-chaperonin GroES
1201	 38.95	0	1168662..1170299	+	545	32266700	groEL	HH1201	-	chaperonin GroEL
1202	 33.47	0	1170403..1171128	-	241	32266701	-	HH1202	-	hypothetical protein
1203	 35.37	0	1171131..1173830	-	899	32266702	ppc	HH1203	-	phosphoenolpyruvate carboxylase
1204	 41.03	+1	1173945..1174970	+	341	32266703	ilvC	HH1204	-	ketol-acid reductoisomerase
1205	 35.40	0	1175065..1176465	+	466	32266704	ktrB	HH1205	-	hypothetical protein
1206	 35.61	0	1176490..1177149	+	219	32266705	ktrA	HH1206	-	hypothetical protein
1207	 35.56	0	1177139..1177900	-	253	32266706	bioC	HH1207	-	hypothetical protein
1208	 35.49	0	1177879..1178574	-	231	32266707	-	HH1208	-	hypothetical protein
1209	 38.43	0	1178571..1179767	-	398	32266708	bioF	HH1209	-	8-amino-7-oxononanoate synthase
1210	 37.06	0	1179847..1181160	+	437	32266709	bioA	HH1210	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1211	 36.51	0	1181162..1181791	-	209	32266710	bioD	HH1211	-	dethiobiotin synthetase
1212	 39.46	+1	1181829..1182758	-	309	32266711	-	HH1212	-	hypothetical protein
1213	 38.19	0	1182755..1182898	-	47	32266712	-	HH1213	-	hypothetical protein
1214	 36.81	0	1182873..1183880	-	335	32266713	-	HH1214	-	hypothetical protein
1215	 39.42	+1	1183870..1185315	-	481	32266714	-	HH1215	-	hypothetical protein
1216	 39.02	0	1185656..1185919	-	87	32266715	-	HH1216	-	hypothetical protein
1217	 34.29	0	1186029..1186238	+	69	32266716	-	HH1217	-	hypothetical protein
1218	 37.61	0	1186427..1186753	-	108	32266717	cutA	HH1218	-	divalent cation tolerance protein CutA
1219	 35.90	0	1186887..1187861	+	324	32266718	-	HH1219	-	hypothetical protein
1220	 36.44	0	1187865..1188959	-	364	32266719	-	HH1220	-	hypothetical protein
1221	 40.00	+1	1189082..1190296	+	404	32266720	argG	HH1221	-	argininosuccinate synthase
1222	 36.82	0	1190297..1191814	+	505	32266721	-	HH1222	-	hypothetical protein
1223	 39.58	+1	1191873..1192688	+	271	32266722	minD	HH1223	-	cell division inhibitor MinD
1224	 36.29	0	1192685..1192921	+	78	32266723	minE	HH1224	-	cell division topological specificity factor MinE
1225	 30.77	-1	1192918..1193034	-	38	32266724	-	HH1225	-	hypothetical protein
1226	 36.55	0	1193051..1193920	+	289	32266725	-	HH1226	-	hypothetical protein
1227	 37.75	0	1193930..1194721	+	263	32266726	dprA	HH1227	-	DNA processing protein DprA
1228	 30.99	-1	1194781..1195122	+	113	32266727	-	HH1228	-	hypothetical protein
1229	 41.97	+1	1195122..1195538	+	138	32266728	-	HH1229	-	Holliday junction resolvase-like protein
1230	 31.26	-1	1195703..1196137	+	144	32266729	-	HH1230	-	hypothetical protein
1231	 32.57	0	1196390..1197562	+	390	32266730	-	HH1231	-	hypothetical protein
1232	 35.37	0	1197567..1198058	-	163	32266731	-	HH1232	-	putative metalloprotease
1233	 36.46	0	1198153..1200006	+	617	32266732	speA	HH1233	-	arginine decarboxylase
1234	 39.29	0	1200006..1200710	+	234	32266733	cysE	HH1234	-	serine acetyltransferase
1235	 33.14	0	1200719..1201744	-	341	32266734	-	HH1235	-	hypothetical protein
1236	 33.05	0	1201744..1202100	-	118	32266735	dksA	HH1236	-	DnaK suppressor protein DskA
1237	 34.86	0	1202110..1202502	-	130	32266736	-	HH1237	-	SPOUT methyltransferase superfamily protein
1238	 37.77	0	1202543..1203421	-	292	32266737	accD	HH1238	-	acetyl-CoA carboxylase subunit beta
1239	 34.81	0	1203424..1204170	-	248	32266738	suhB	HH1239	-	hypothetical protein
1240	 34.29	0	1204239..1204865	+	208	32266739	-	HH1240	-	hypothetical protein
1241	 39.25	0	1204978..1206330	+	450	32266740	gdhA	HH1241	-	glutamate dehydrogenase
1242	 36.94	0	1206415..1207467	-	350	32266741	mutY	HH1242	-	A/G-specific adenine glycosylase
1243	 39.64	+1	1207616..1208821	+	401	32266742	ndh	HH1243	-	NADH dehydrogenase Ndh
1244	 34.36	0	1209054..1209737	+	227	32266743	-	HH1244	-	adenine-specific DNA methylase
1245	 38.79	0	1209808..1210815	+	335	32266744	purM	HH1245	-	phosphoribosylaminoimidazole synthetase
1246	 35.48	0	1210831..1211622	+	263	32266745	-	HH1246	-	hypothetical protein
1247	 34.82	0	1211625..1212431	+	268	32266746	aroE	HH1247	-	shikimate 5-dehydrogenase
1248	 39.43	+1	1212487..1212765	+	92	32266747	gatC	HH1248	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1249	 39.97	+1	1212762..1213469	+	235	32266748	ung	HH1249	-	uracil-DNA glycosylase
1250	 34.81	0	1213476..1215173	-	565	32266749	kefB_2	HH1250	-	glutathione-regulated potassium-efflux system protein KefB
1251	 32.78	0	1215345..1216604	+	419	32266750	-	HH1251	-	hypothetical protein
1252	 34.62	0	1216753..1217451	+	232	32266751	-	HH1252	-	hypothetical protein
1253	 36.00	0	1217538..1217687	-	49	32266752	-	HH1253	-	hypothetical protein
1254	 33.08	0	1217707..1218495	+	262	32266753	-	HH1254	-	hypothetical protein
1255	 34.43	0	1218550..1219821	+	423	32266754	-	HH1255	-	hypothetical protein
1256	 37.09	0	1219927..1221390	+	487	32266755	fixN	HH1256	-	cb-type cytochrome C oxidase subunit I
1257	 38.87	0	1221406..1222146	+	246	32266756	fixO	HH1257	-	cb-type cytochrome C oxidase subunit II
1258	 29.87	-1	1222143..1222373	+	76	32266757	fixQ	HH1258	-	cb-type cytochrome C oxidase subunit IV
1259	 37.57	0	1222370..1223242	+	290	32266758	fixP	HH1259	-	cb-type cytochrome C oxidase subunit III
1260	 37.31	0	1223254..1223454	+	66	32266759	-	HH1260	-	hypothetical protein
1261	 32.41	0	1223464..1223571	+	35	32266760	-	HH1261	-	hypothetical protein
1262	 33.78	0	1223575..1224249	+	224	32266761	-	HH1262	-	hypothetical protein
1263	 32.07	-1	1224266..1224898	+	210	32266762	-	HH1263	-	hypothetical protein
1264	 34.67	0	1224908..1225207	+	99	32266763	-	HH1264	-	hypothetical protein
1265	 38.69	0	1225207..1225971	+	254	32266764	-	HH1265	-	hypothetical protein
1266	 38.84	0	1226034..1226378	+	114	32266765	-	HH1266	-	hypothetical protein
1267	 35.35	0	1226460..1227650	+	396	32266766	-	HH1267	-	hypothetical protein
1268	 36.19	0	1227662..1230562	-	966	32266767	dld	HH1268	-	hypothetical protein
1269	 36.21	0	1230614..1231030	-	138	32266768	-	HH1269	-	hypothetical protein
1270	 36.70	0	1231084..1234740	-	1218	32266769	dnaE	HH1270	-	DNA polymerase III subunit alpha
1271	 35.11	0	1234897..1236300	+	467	32266770	-	HH1271	-	hypothetical protein
1272	 37.32	0	1236297..1237424	-	375	32266771	nusA	HH1272	-	transcription elongation factor NusA
1273	 31.80	-1	1237600..1237860	+	86	32266772	-	HH1273	-	hypothetical protein
1274	 36.86	0	1237945..1239276	+	443	32266773	-	HH1274	-	hypothetical protein
1275	 36.74	0	1239270..1239914	+	214	32266774	-	HH1275	-	hypothetical protein
1276	 36.31	0	1239977..1241017	+	346	32266775	-	HH1276	-	hypothetical protein
1277	 30.78	-1	1241021..1241569	+	182	32266776	-	HH1277	-	hypothetical protein
1278	 31.10	-1	1241562..1242143	+	193	32266777	-	HH1278	-	hypothetical protein
1279	 37.21	0	1242153..1243106	+	317	32266778	mraW	HH1279	-	S-adenosyl-methyltransferase MraW
1280	 31.44	-1	1243107..1243475	+	122	32266779	-	HH1280	-	hypothetical protein
1281	 38.38	0	1243550..1243648	+	32	32266780	-	HH1281	-	hypothetical protein
35.80	MEAN

3.58	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.