IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1056	 38.97	0	1030508..1030915	-	135	32266555	-	HH1056	-	hypothetical protein
1057	 38.97	0	1031045..1031665	+	206	32266556	-	HH1057	-	hypothetical protein
1058	 26.19	-2	1031695..1031820	+	41	32266557	-	HH1058	-	hypothetical protein
1059	 41.98	+1	1031810..1032202	+	130	32266558	-	HH1059	-	hypothetical protein
1060	 43.73	+2	1032321..1032878	+	185	32266559	-	HH1060	-	hypothetical protein
1061	 29.76	-1	1032985..1034748	+	587	32266560	-	HH1061	-	hypothetical protein
1062	 41.12	+1	1034767..1035177	+	136	32266561	-	HH1062	-	hypothetical protein
1063	 37.41	0	1035272..1036153	+	293	32266562	-	HH1063	-	hypothetical protein
1064	 40.02	+1	1036272..1037438	+	388	32266563	-	HH1064	-	hypothetical protein
1065	 32.03	-1	1037674..1038366	+	230	32266564	-	HH1065	-	hypothetical protein
1066	 35.34	0	1038471..1039169	-	232	32266565	-	HH1066	-	hypothetical protein
1067	 37.12	0	1039241..1041352	+	703	32266566	glyS	HH1067	-	glycyl-tRNA synthetase subunit beta
1068	 36.45	0	1041349..1042470	+	373	32266567	-	HH1068	-	hypothetical protein
1069	 32.44	0	1042614..1042838	+	74	32266568	-	HH1069	-	hypothetical protein
1070	 35.69	0	1042847..1043611	-	254	32266569	-	HH1070	-	hypothetical protein
1071	 38.58	0	1043638..1044705	-	355	32266570	tsf	HH1071	-	elongation factor Ts
1072	 38.62	0	1044707..1045501	-	264	32266571	rpsB	HH1072	-	30S ribosomal protein S2
1073	 27.08	-2	1045584..1045679	+	31	32266572	-	HH1073	-	hypothetical protein
1074	 37.38	0	1045704..1047014	-	436	32266573	rpoN	HH1074	-	RNA polymerase factor sigma-54
1075	 37.21	0	1047011..1047733	-	240	32266574	yhbG	HH1075	-	ABC-transporter ATP-binding protein
1076	 36.55	0	1047730..1048164	-	144	32266575	-	HH1076	-	hypothetical protein
1077	 37.91	0	1048157..1049752	-	531	32266576	dnaX	HH1077	-	DNA polymerase III subunits gamma and tau
1078	 33.33	0	1049733..1049843	+	36	32266577	-	HH1078	-	hypothetical protein
1079	 39.18	0	1049898..1050530	-	210	32266578	-	HH1079	-	hypothetical protein
1080	 30.77	-1	1050591..1050707	+	38	32266579	-	HH1080	-	hypothetical protein
1081	 41.19	+1	1050682..1051470	+	262	32266580	flgG	HH1081	-	flagellar basal body rod protein FlgG
1082	 36.11	0	1051483..1052742	-	419	32266581	-	HH1082	-	hypothetical protein
1083	 38.02	0	1052733..1054055	-	440	32266582	-	HH1083	-	hypothetical protein
1084	 34.47	0	1054098..1055510	-	470	32266583	-	HH1084	-	hypothetical protein
1085	 33.78	0	1055672..1056340	-	222	32266584	-	HH1085	-	hypothetical protein
1086	 36.30	0	1056454..1057668	-	404	32266585	-	HH1086	-	hypothetical protein
1087	 35.40	0	1057760..1058146	-	128	32266586	-	HH1087	-	hypothetical protein
1088	 34.19	0	1058232..1060208	-	658	32266587	-	HH1088	-	hypothetical protein
1089	 20.37	-2	1060339..1060446	+	35	32266588	-	HH1089	-	hypothetical protein
1090	 38.85	0	1060468..1061301	+	277	32266589	flgG_1	HH1090	-	flagellar distal rod protein FlgG
1091	 36.23	0	1061331..1063022	+	563	32266590	-	HH1091	-	type I restriction enzyme
1092	 41.47	+1	1063023..1063538	+	171	32266591	-	HH1092	-	hypothetical protein
1093	 40.20	+1	1063535..1064248	+	237	32266592	-	HH1093	-	hypothetical protein
1094	 40.82	+1	1064330..1065544	+	404	32266593	-	HH1094	-	malate oxidoreductase
1095	 31.16	-1	1065853..1065990	-	45	32266594	-	HH1095	-	hypothetical protein
1096	 35.27	0	1066084..1066548	-	154	32266595	-	HH1096	-	hypothetical protein
1097	 31.44	-1	1066717..1067298	-	193	32266596	-	HH1097	-	hypothetical protein
1098	 44.22	+2	1067292..1068890	-	532	32266597	-	HH1098	-	hypothetical protein
1099	 40.67	+1	1069035..1070015	+	326	32266598	lpxD	HH1099	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1100	 35.14	0	1070053..1071432	+	459	32266599	sdaC	HH1100	-	serine transporter
1101	 25.00	-2	1071438..1071545	-	35	32266600	-	HH1101	-	hypothetical protein
1102	 38.22	0	1071562..1072686	-	374	32266601	cydB	HH1102	-	cytochrome bd quinol oxidase
1103	 39.05	0	1072686..1074260	-	524	32266602	cydA	HH1103	-	cytochrome bd quinol oxidase
1104	 27.38	-2	1074287..1074538	-	83	32266603	-	HH1104	-	hypothetical protein
1105	 35.86	0	1074682..1077012	+	776	32266604	-	HH1105	-	hypothetical protein
1106	 36.04	0	1077025..1078869	+	614	32266605	-	HH1106	-	hypothetical protein
1107	 33.33	0	1078876..1079049	+	57	32266606	-	HH1107	-	hypothetical protein
1108	 38.89	0	1079084..1079263	+	59	32266607	-	HH1108	-	hypothetical protein
1109	 36.94	0	1079407..1080597	-	396	32266608	-	HH1109	-	hypothetical protein
1110	 31.66	-1	1080619..1081989	-	456	32266609	dnaA	HH1110	-	chromosomal replication initiation protein
1111	 35.13	0	1082089..1082646	+	185	32266610	ruvC	HH1111	-	Holliday junction resolvase
1112	 34.83	0	1082643..1084046	+	467	32266611	-	HH1112	-	hypothetical protein
1113	 35.05	0	1084036..1084674	+	212	32266612	-	HH1113	-	hypothetical protein
1114	 33.59	0	1084671..1085057	+	128	32266613	-	HH1114	-	hypothetical protein
1115	 35.27	0	1085054..1086655	+	533	32266614	-	HH1115	-	hypothetical protein
1116	 36.01	0	1086655..1088223	+	522	32266615	gspE	HH1116	-	hypothetical protein
1117	 34.62	0	1088211..1089455	+	414	32266616	-	HH1117	-	hypothetical protein
1118	 38.12	0	1089442..1090548	-	368	32266617	-	HH1118	-	hypothetical protein
1119	 38.89	0	1090590..1090733	+	47	32266618	-	HH1119	-	hypothetical protein
1120	 37.17	0	1090633..1091283	+	216	161546628	thyX	HH1120	-	FAD-dependent thymidylate synthase
1121	 31.32	-1	1091289..1091885	-	198	32266620	-	HH1121	-	hypothetical protein
1122	 32.95	0	1091882..1092658	-	258	32266621	-	HH1122	-	hypothetical protein
1123	 32.59	0	1092643..1093449	-	268	32266622	-	HH1123	-	ABC transporter
1124	 32.95	0	1093446..1094492	-	348	32266623	-	HH1124	-	hypothetical protein
1125	 27.62	-2	1094687..1094791	+	34	32266624	-	HH1125	-	hypothetical protein
1126	 31.45	-1	1094815..1095876	+	353	32266625	dnaN	HH1126	-	DNA polymerase III subunit beta
1127	 34.33	0	1095901..1098219	+	772	32266626	gyrB	HH1127	-	DNA gyrase subunit B
1128	 28.23	-2	1098232..1099386	-	384	32266627	-	HH1128	-	hypothetical protein
1129	 33.41	0	1099396..1100643	-	415	32266628	-	HH1129	-	alginate O- acetylation protein
1130	 31.68	-1	1100834..1101136	-	100	32266629	-	HH1130	-	alginate O- acetylation protein
1131	 19.67	-2	1101120..1101302	-	60	32266630	-	HH1131	-	hypothetical protein
1132	 27.78	-2	1101305..1101466	-	53	32266631	-	HH1132	-	hypothetical protein
1133	 31.25	-1	1101584..1101727	-	47	32266632	-	HH1133	-	hypothetical protein
1134	 40.59	+1	1101727..1102677	-	316	32266633	leuB	HH1134	-	isopropylmalate dehydrogenase
1135	 37.35	0	1102817..1103314	-	165	32266634	leuD	HH1135	-	3-isopropylmalate dehydratase
1136	 39.90	+1	1103370..1104632	-	420	32266635	leuC	HH1136	-	3-isopropylmalate dehydratase large subunit
1137	 37.21	0	1104648..1106324	-	558	32266636	leuA	HH1137	-	2-isopropylmalate synthase
1138	 39.30	0	1106493..1106693	-	66	32266637	-	HH1138	-	hypothetical protein
1139	 26.67	-2	1106723..1106827	+	34	32266638	-	HH1139	-	hypothetical protein
1140	 36.04	0	1106917..1107765	+	282	32266639	tal	HH1140	-	transaldolase
1141	 33.20	0	1107776..1108522	-	248	32266640	-	HH1141	-	hypothetical protein
1142	 36.17	0	1108600..1109127	+	175	32266641	folK	HH1142	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
1143	 36.29	0	1109219..1110670	+	483	32266642	flhF	HH1143	-	flagellar biosynthesis regulator FlhF
1144	 37.34	0	1110683..1111555	+	290	32266643	-	HH1144	-	hypothetical protein
1145	 32.49	0	1111580..1111936	+	118	32266644	-	HH1145	-	hypothetical protein
1146	 36.86	0	1111948..1112655	+	235	161546627	fliA	HH1146	-	flagellar biosynthesis sigma factor
1147	 37.38	0	1112648..1113709	+	353	32266646	fliM	HH1147	-	flagellar motor switch protein FliM
1148	 37.99	0	1113706..1114542	+	278	32266647	fliY	HH1148	-	flagellar motor switch protein FliY
1149	 35.29	0	1114619..1114822	-	67	32266648	-	HH1149	-	hypothetical protein
1150	 36.22	0	1114921..1115544	+	207	32266649	-	HH1150	-	hypothetical protein
1151	 32.58	0	1115558..1116892	+	444	32266650	-	HH1151	-	hypothetical protein
1152	 32.47	0	1116993..1117568	+	191	32266651	-	HH1152	-	hypothetical protein
1153	 39.40	+1	1117565..1118536	-	323	32266652	trxB_2	HH1153	-	hypothetical protein
1154	 34.67	0	1118529..1118753	-	74	32266653	-	HH1154	-	hypothetical protein
1155	 36.80	0	1118909..1120579	+	556	32266654	-	HH1155	-	hypothetical protein
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.