IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1018	 35.46	0	994014..995141	-	375	32266517	flhB	HH1018	-	flagellar biosynthesis protein FlhB
1019	 37.02	0	995145..995714	-	189	32266518	mobA	HH1019	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1020	 36.94	0	995808..996806	+	332	32266519	moaA	HH1020	-	molybdenum cofactor biosynthesis protein A
1021	 37.48	0	996902..997987	+	361	32266520	-	HH1021	-	hypothetical protein
1022	 36.39	0	998096..1000483	+	795	32266521	-	HH1022	-	cation-transporting ATPase
1023	 41.04	+1	1000593..1001708	+	371	32266522	-	HH1023	-	hypothetical protein
1024	 34.31	0	1001785..1001988	-	67	32266523	-	HH1024	-	hypothetical protein
1025	 36.36	0	1002152..1004662	+	836	32266524	-	HH1025	-	hypothetical protein
1026	 39.61	+1	1004715..1005527	-	270	32266525	-	HH1026	-	hypothetical protein
1027	 42.15	+1	1005984..1006652	+	222	32266526	-	HH1027	-	hypothetical protein
1028	 30.51	-1	1007202..1007378	+	58	32266527	-	HH1028	-	hypothetical protein
1029	 27.93	-2	1007349..1009586	-	745	32266528	-	HH1029	-	hypothetical protein
1030	 29.17	-1	1009583..1011262	-	559	32266529	-	HH1030	-	hypothetical protein
1031	 43.25	+2	1011450..1011923	-	157	32266530	-	HH1031	-	flavodoxin
1032	 41.60	+1	1011898..1012296	-	132	32266531	-	HH1032	-	hypothetical protein
1033	 41.81	+1	1012403..1013440	-	345	32266532	-	HH1033	-	hypothetical protein
1034	 39.94	+1	1013457..1014530	-	357	32266533	-	HH1034	-	hypothetical protein
1035	 41.11	+1	1014704..1015282	+	192	32266534	-	HH1035	-	hypothetical protein
1036	 32.47	0	1015368..1015832	+	154	32266535	-	HH1036	-	hypothetical protein
1037	 47.37	+2	1015879..1016391	+	170	32266536	ogt	HH1037	-	methylated DNA-protein cysteine methyltransferase
1038	 29.37	-1	1016511..1017746	+	411	32266537	-	HH1038	-	type II R/M system
1039	 30.07	-1	1017751..1019649	+	632	32266538	-	HH1039	-	hypothetical protein
1040	 28.75	-1	1019651..1021045	+	464	32266539	-	HH1040	-	hypothetical protein
1041	 41.05	+1	1021081..1021443	+	120	32266540	-	HH1041	-	hypothetical protein
1042	 44.27	+2	1021476..1022060	-	194	32266541	-	HH1042	-	hypothetical protein
1043	 38.89	0	1022057..1022470	-	137	32266542	-	HH1043	-	hypothetical protein
1044	 39.39	+1	1022471..1023229	-	252	32266543	-	HH1044	-	hypothetical protein
1045	 32.62	0	1023447..1024712	+	421	32266544	-	HH1045	-	hypothetical protein
1046	 43.09	+2	1024751..1025416	+	221	32266545	-	HH1046	-	hypothetical protein
1047	 34.81	0	1025545..1025679	+	44	32266546	-	HH1047	-	hypothetical protein
1048	 42.48	+1	1025763..1026626	-	287	32266547	rocF	HH1048	-	arginase
1049	 36.30	0	1026748..1027860	+	370	32266548	-	HH1049	-	hypothetical protein
1050	 37.57	0	1027876..1028889	-	337	32266549	-	HH1050	-	hypothetical protein
1051	 35.26	0	1028893..1029567	-	224	32266550	-	HH1051	-	hypothetical protein
1052	 30.89	-1	1029637..1029759	+	40	32266551	-	HH1052	-	hypothetical protein
1053	 33.33	0	1029756..1029863	-	35	32266552	-	HH1053	-	hypothetical protein
1054	 43.35	+2	1029866..1030384	+	172	32266553	-	HH1054	-	hypothetical protein
1055	 42.28	+1	1030381..1030503	-	40	32266554	-	HH1055	-	hypothetical protein
1056	 38.97	0	1030508..1030915	-	135	32266555	-	HH1056	-	hypothetical protein
1057	 38.97	0	1031045..1031665	+	206	32266556	-	HH1057	-	hypothetical protein
1058	 26.19	-2	1031695..1031820	+	41	32266557	-	HH1058	-	hypothetical protein
1059	 41.98	+1	1031810..1032202	+	130	32266558	-	HH1059	-	hypothetical protein
1060	 43.73	+2	1032321..1032878	+	185	32266559	-	HH1060	-	hypothetical protein
1061	 29.76	-1	1032985..1034748	+	587	32266560	-	HH1061	-	hypothetical protein
1062	 41.12	+1	1034767..1035177	+	136	32266561	-	HH1062	-	hypothetical protein
1063	 37.41	0	1035272..1036153	+	293	32266562	-	HH1063	-	hypothetical protein
1064	 40.02	+1	1036272..1037438	+	388	32266563	-	HH1064	-	hypothetical protein
1065	 32.03	-1	1037674..1038366	+	230	32266564	-	HH1065	-	hypothetical protein
1066	 35.34	0	1038471..1039169	-	232	32266565	-	HH1066	-	hypothetical protein
1067	 37.12	0	1039241..1041352	+	703	32266566	glyS	HH1067	-	glycyl-tRNA synthetase subunit beta
1068	 36.45	0	1041349..1042470	+	373	32266567	-	HH1068	-	hypothetical protein
1069	 32.44	0	1042614..1042838	+	74	32266568	-	HH1069	-	hypothetical protein
1070	 35.69	0	1042847..1043611	-	254	32266569	-	HH1070	-	hypothetical protein
1071	 38.58	0	1043638..1044705	-	355	32266570	tsf	HH1071	-	elongation factor Ts
1072	 38.62	0	1044707..1045501	-	264	32266571	rpsB	HH1072	-	30S ribosomal protein S2
1073	 27.08	-2	1045584..1045679	+	31	32266572	-	HH1073	-	hypothetical protein
1074	 37.38	0	1045704..1047014	-	436	32266573	rpoN	HH1074	-	RNA polymerase factor sigma-54
1075	 37.21	0	1047011..1047733	-	240	32266574	yhbG	HH1075	-	ABC-transporter ATP-binding protein
1076	 36.55	0	1047730..1048164	-	144	32266575	-	HH1076	-	hypothetical protein
1077	 37.91	0	1048157..1049752	-	531	32266576	dnaX	HH1077	-	DNA polymerase III subunits gamma and tau
1078	 33.33	0	1049733..1049843	+	36	32266577	-	HH1078	-	hypothetical protein
1079	 39.18	0	1049898..1050530	-	210	32266578	-	HH1079	-	hypothetical protein
1080	 30.77	-1	1050591..1050707	+	38	32266579	-	HH1080	-	hypothetical protein
1081	 41.19	+1	1050682..1051470	+	262	32266580	flgG	HH1081	-	flagellar basal body rod protein FlgG
1082	 36.11	0	1051483..1052742	-	419	32266581	-	HH1082	-	hypothetical protein
1083	 38.02	0	1052733..1054055	-	440	32266582	-	HH1083	-	hypothetical protein
1084	 34.47	0	1054098..1055510	-	470	32266583	-	HH1084	-	hypothetical protein
1085	 33.78	0	1055672..1056340	-	222	32266584	-	HH1085	-	hypothetical protein
1086	 36.30	0	1056454..1057668	-	404	32266585	-	HH1086	-	hypothetical protein
1087	 35.40	0	1057760..1058146	-	128	32266586	-	HH1087	-	hypothetical protein
1088	 34.19	0	1058232..1060208	-	658	32266587	-	HH1088	-	hypothetical protein
1089	 20.37	-2	1060339..1060446	+	35	32266588	-	HH1089	-	hypothetical protein
1090	 38.85	0	1060468..1061301	+	277	32266589	flgG_1	HH1090	-	flagellar distal rod protein FlgG
1091	 36.23	0	1061331..1063022	+	563	32266590	-	HH1091	-	type I restriction enzyme
1092	 41.47	+1	1063023..1063538	+	171	32266591	-	HH1092	-	hypothetical protein
1093	 40.20	+1	1063535..1064248	+	237	32266592	-	HH1093	-	hypothetical protein
1094	 40.82	+1	1064330..1065544	+	404	32266593	-	HH1094	-	malate oxidoreductase
1095	 31.16	-1	1065853..1065990	-	45	32266594	-	HH1095	-	hypothetical protein
1096	 35.27	0	1066084..1066548	-	154	32266595	-	HH1096	-	hypothetical protein
1097	 31.44	-1	1066717..1067298	-	193	32266596	-	HH1097	-	hypothetical protein
1098	 44.22	+2	1067292..1068890	-	532	32266597	-	HH1098	-	hypothetical protein
1099	 40.67	+1	1069035..1070015	+	326	32266598	lpxD	HH1099	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1100	 35.14	0	1070053..1071432	+	459	32266599	sdaC	HH1100	-	serine transporter
1101	 25.00	-2	1071438..1071545	-	35	32266600	-	HH1101	-	hypothetical protein
1102	 38.22	0	1071562..1072686	-	374	32266601	cydB	HH1102	-	cytochrome bd quinol oxidase
1103	 39.05	0	1072686..1074260	-	524	32266602	cydA	HH1103	-	cytochrome bd quinol oxidase
1104	 27.38	-2	1074287..1074538	-	83	32266603	-	HH1104	-	hypothetical protein
1105	 35.86	0	1074682..1077012	+	776	32266604	-	HH1105	-	hypothetical protein
1106	 36.04	0	1077025..1078869	+	614	32266605	-	HH1106	-	hypothetical protein
1107	 33.33	0	1078876..1079049	+	57	32266606	-	HH1107	-	hypothetical protein
1108	 38.89	0	1079084..1079263	+	59	32266607	-	HH1108	-	hypothetical protein
1109	 36.94	0	1079407..1080597	-	396	32266608	-	HH1109	-	hypothetical protein
1110	 31.66	-1	1080619..1081989	-	456	32266609	dnaA	HH1110	-	chromosomal replication initiation protein
1111	 35.13	0	1082089..1082646	+	185	32266610	ruvC	HH1111	-	Holliday junction resolvase
1112	 34.83	0	1082643..1084046	+	467	32266611	-	HH1112	-	hypothetical protein
1113	 35.05	0	1084036..1084674	+	212	32266612	-	HH1113	-	hypothetical protein
1114	 33.59	0	1084671..1085057	+	128	32266613	-	HH1114	-	hypothetical protein
1115	 35.27	0	1085054..1086655	+	533	32266614	-	HH1115	-	hypothetical protein
1116	 36.01	0	1086655..1088223	+	522	32266615	gspE	HH1116	-	hypothetical protein
1117	 34.62	0	1088211..1089455	+	414	32266616	-	HH1117	-	hypothetical protein
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.