IslandPath Analysis: Helicobacter hepaticus ATCC 51449



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.80   STD DEV: 3.58
Helicobacter hepaticus ATCC 51449, complete genome - 1..1799146
1875 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
55	 34.91	0	59970..60287	-	105	32265554	trxA_2	HH0055	-	thioredoxin
56	 42.64	+1	60643..61803	+	386	32265555	hyaA	HH0056	-	Ni/Fe hydrogenase beta subunit
57	 38.71	0	61814..63544	+	576	32265556	hyaB	HH0057	-	Ni/Fe hydrogenase alpha subunit
58	 35.03	0	63555..64319	+	254	32265557	hyaC	HH0058	-	Ni/Fe hydrogenase cytochrome b subunit
59	 37.78	0	64327..64866	+	179	32265558	hyaD	HH0059	-	hydrogenase formation/expression protease HyaD/HupD
60	 36.40	0	64863..66656	+	597	32265559	-	HH0060	-	hypothetical protein
61	 36.06	0	66709..67479	+	256	32265560	-	HH0061	-	hypothetical protein
62	 39.41	+1	67490..68641	+	383	32265561	metB	HH0062	-	cystathionine gamma-synthase
63	 38.22	0	68643..69584	+	313	32265562	cysK_1	HH0063	-	cysteine synthase
64	 33.72	0	69562..70341	-	259	32265563	-	HH0064	-	hypothetical protein
65	 33.33	0	70335..70496	-	53	32265564	-	HH0065	-	hypothetical protein
66	 36.08	0	70592..71065	+	157	32265565	-	HH0066	-	hypothetical protein
67	 36.78	0	71217..71825	+	202	32265566	-	HH0067	-	hypothetical protein
68	 35.64	0	71863..72771	-	302	32265567	-	HH0068	-	hypothetical protein
69	 37.95	0	72768..73244	-	158	32265568	-	HH0069	-	alpha-1,2-fucosyltransferase fragment
70	 32.89	0	73214..73666	-	150	32265569	-	HH0070	-	alpha-1,2-fucosyltransferase fragment
71	 43.53	+2	73683..74780	-	365	32265570	-	HH0071	-	hypothetical protein
72	 40.08	+1	74801..75763	-	320	32265571	-	HH0072	-	hypothetical protein
73	 35.90	0	75766..76854	-	362	32265572	-	HH0073	-	hypothetical protein
74	 30.17	-1	76926..77558	-	210	32265573	cfa	HH0074	-	hypothetical protein
75	 36.50	0	77551..78276	-	241	32265574	ygeA	HH0075	-	aspartate racemase
76	 33.33	0	78397..79212	-	271	32265575	-	HH0076	-	hypothetical protein
77	 36.60	0	79209..79850	-	213	32265576	-	HH0077	-	hypothetical protein
78	 35.50	0	79823..80422	-	199	32265577	serB	HH0078	-	phosphoserine phosphatase
79	 31.90	-1	80419..81888	-	489	32265578	-	HH0079	-	hypothetical protein
80	 31.61	-1	81950..83107	-	385	32265579	-	HH0080	-	hypothetical protein
81	 31.76	-1	83104..84057	-	317	32265580	-	HH0081	-	hypothetical protein
82	 35.41	0	84050..84868	-	272	32265581	-	HH0082	-	UDP-N-acetylglucosamine 2-epimerase
83	 36.73	0	85287..86021	-	244	32265582	-	HH0083	-	hypothetical protein
84	 34.00	0	86018..87661	-	547	32265583	-	HH0084	-	hypothetical protein
85	 32.32	0	87674..87772	-	32	32265584	-	HH0085	-	hypothetical protein
86	 37.46	0	87774..88088	-	104	32265585	-	HH0086	-	hypothetical protein
87	 30.98	-1	88088..88342	-	84	32265586	-	HH0087	-	acyl carrier protein
88	 33.16	0	88345..88917	-	190	32265587	-	HH0088	-	hypothetical protein
89	 36.86	0	88914..89876	-	320	32265588	-	HH0089	-	hypothetical protein
90	 33.26	0	89982..91340	-	452	32265589	-	HH0090	-	hypothetical protein
91	 35.58	0	91340..92851	-	503	32265590	-	HH0091	-	hypothetical protein
92	 36.73	0	92844..93578	-	244	32265591	-	HH0092	-	hypothetical protein
93	 32.65	0	93571..93864	-	97	32265592	-	HH0093	-	hypothetical protein
94	 37.23	0	93865..94428	-	187	32265593	-	HH0094	-	hypothetical protein
95	 40.43	+1	94428..94991	-	187	32265594	-	HH0095	-	hypothetical protein
96	 36.24	0	95258..95704	+	148	32265595	-	HH0096	-	hypothetical protein
97	 36.57	0	95714..96115	+	133	32265596	-	HH0097	-	hypothetical protein
98	 37.87	0	96474..97508	-	344	32265597	-	HH0098	-	molybdenum cofactor biosynthesis protein A
99	 37.21	0	97587..98618	-	343	32265598	-	HH0099	-	dTDP-D-glucose 4,6-dehydratase
100	 40.87	+1	98618..99493	-	291	32265599	-	HH0100	-	hypothetical protein
101	 39.72	+1	99550..101364	-	604	32265600	lepA	HH0101	-	GTP-binding protein LepA
102	 37.73	0	101556..102716	+	386	32265601	ftsW_2	HH0102	-	putative cell division protein FtsW
103	 35.84	0	102730..103248	+	172	32265602	-	HH0103	-	hypothetical protein
104	 38.19	0	103256..103996	+	246	32265603	hemD	HH0104	-	uroporphyrinogen-III synthase
105	 34.18	0	104073..104903	+	276	32265604	-	HH0105	-	hypothetical protein
106	 40.37	+1	104932..105855	+	307	32265605	fba	HH0106	-	fructose-bisphosphate aldolase
107	 27.78	-2	105950..106111	+	53	32265606	-	HH0107	-	hypothetical protein
108	 39.18	0	106199..106762	+	187	32265607	efp	HH0108	-	elongation factor P
109	 38.33	0	106821..109400	-	859	32265608	clpA	HH0109	-	ATP-dependent Clp protease ClpA
110	 36.27	0	109547..110977	-	476	32265609	trmE	HH0110	-	tRNA modification GTPase TrmE
111	 33.83	0	110913..111719	-	268	32265610	-	HH0111	-	hypothetical protein
112	 35.30	0	111722..113497	-	591	32265611	-	HH0112	-	putative inner membrane protein translocase component YidC
113	 30.37	-1	113502..113771	-	89	32265612	-	HH0113	-	hypothetical protein
114	 34.50	0	113789..113959	+	56	32265613	-	HH0114	-	hypothetical protein
115	 30.84	-1	113886..114326	-	146	32265614	rnpA	HH0115	-	ribonuclease P
116	 41.48	+1	114350..114484	-	44	32265615	rpmH	HH0116	-	50S ribosomal protein L34
117	 33.19	0	114544..115260	-	238	32265616	-	HH0117	-	hypothetical protein
118	 35.94	0	115267..117186	-	639	32265617	-	HH0118	-	hypothetical protein
119	 33.60	0	117208..117588	-	126	32265618	-	HH0119	-	biopolymer transport protein
120	 38.19	0	117585..118037	-	150	32265619	-	HH0120	-	biopolymer transport protein
121	 32.26	0	118056..118523	-	155	32265620	smpB	HH0121	-	SsrA-binding protein
122	 36.86	0	118525..119205	-	226	32265621	-	HH0122	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
123	 36.25	0	119335..119574	-	79	32265622	-	HH0123	-	carbon storage regulator
124	 36.73	0	119546..120400	-	284	32265623	truB	HH0124	-	tRNA pseudouridine synthase B
125	 33.43	0	120463..121524	-	353	32265624	-	HH0125	-	hypothetical protein
126	 37.05	0	121531..122391	-	286	32265625	-	HH0126	-	hypothetical protein
127	 37.55	0	122388..122885	-	165	32265626	-	HH0127	-	hypothetical protein
128	 32.46	0	122898..124379	-	493	32265627	-	HH0128	-	hypothetical protein
129	 32.65	0	124390..124680	-	96	32265628	-	HH0129	-	hypothetical protein
130	 35.15	0	124677..125282	-	201	32265629	-	HH0130	-	hypothetical protein
131	 33.33	0	125433..126485	-	350	32265630	ddl	HH0131	-	D-alanyl-alanine synthetase A
132	 37.43	0	126488..129319	-	943	32265631	uvrA	HH0132	-	excinuclease ABC subunit A
133	 35.48	0	129365..129643	-	92	32265632	-	HH0133	-	hypothetical protein
134	 39.84	+1	129507..129629	+	40	32265633	-	HH0134	-	hypothetical protein
135	 37.89	0	129667..131247	-	526	32265634	serA	HH0135	-	D-3-phosphoglycerate dehydrogenase
136	 35.91	0	131269..131733	-	154	32265635	-	HH0136	-	hypothetical protein
137	 34.30	0	131750..133408	-	552	32265636	rpsA	HH0137	-	30S ribosomal protein S1
138	 34.91	0	133502..134323	-	273	32265637	ispH	HH0138	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
139	 39.26	0	134313..135629	-	438	32265638	aroA	HH0139	-	3-phosphoshikimate 1-carboxyvinyltransferase
140	 35.22	0	135696..136754	-	352	32265639	-	HH0140	-	two component system sensor kinase protein
141	 31.51	-1	136738..137121	-	127	32265640	-	HH0141	-	hypothetical protein
142	 38.20	0	137132..138178	-	348	32265641	flgI	HH0142	-	flagellar basal body P-ring protein
143	 38.89	0	138399..139010	-	203	32265642	-	HH0143	-	hypothetical protein
144	 37.73	0	139010..139441	-	143	32265643	-	HH0144	-	hypothetical protein
145	 30.23	-1	139588..139716	+	42	32265644	-	HH0145	-	hypothetical protein
146	 22.22	-2	139780..139878	-	32	32265645	-	HH0146	-	hypothetical protein
147	 38.61	0	139870..141612	+	580	32265646	-	HH0147	-	hypothetical protein
148	 37.58	0	141622..141951	-	109	32265647	-	HH0148	-	hypothetical protein
149	 35.11	0	141965..142582	-	205	32265648	hisG	HH0149	-	ATP phosphoribosyltransferase catalytic subunit
150	 34.94	0	142614..143234	-	206	32265649	-	HH0150	-	pantothenate kinase
151	 31.09	-1	143234..144259	-	341	32265650	-	HH0151	-	hypothetical protein
152	 34.71	0	144289..144942	-	217	32265651	-	HH0152	-	hypothetical protein
153	 42.35	+1	144953..145429	-	158	32265652	dut	HH0153	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
154	 39.02	0	145433..145924	-	163	32265653	greA	HH0154	-	transcription elongation factor GreA
35.80	MEAN

3.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.