IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
943	 42.92	-1	1177308..1178162	+	284	110667919	-	HQ1970A	-	site-specific DNA-methyltransferase
944	 38.79	-2	1178326..1179462	-	378	110667920	-	HQ1971A	-	hypothetical protein
945	 49.71	0	1179797..1181335	+	512	110667921	aldH	HQ1972A	-	aldehyde dehydrogenase
946	 46.52	0	1182463..1183266	-	267	110667922	sfsA	HQ1973A	-	DNA-binding protein, stimulates sugar fermentation
947	 50.78	0	1183918..1184937	+	339	110667923	tauA	HQ1974A	-	ABC-type nitrate/sulfonate/bicarbonate transport system, substrate binding protein
948	 48.73	0	1184944..1185768	+	274	110667924	tauC	HQ1975A	-	ABC-type nitrate/sulfonate/bicarbonate transport system, permease protein
949	 48.67	0	1185765..1186514	+	249	110667925	tauB	HQ1976A	-	ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein
950	 50.89	0	1186589..1187260	+	223	110667926	tauC	HQ1977A	-	ABC-type nitrate/sulfonate/bicarbonate transport system, permease protein
951	 52.80	+1	1187281..1188030	-	249	110667927	-	HQ1978A	-	NCAIR mutase (PurE)-related protein
952	 53.20	+1	1188040..1189212	-	390	110667928	pncB	HQ1979A	-	nicotinate phosphoribosyltransferase
953	 50.42	0	1189517..1190821	-	434	110667929	-	HQ1980A	-	hypothetical protein
954	 47.83	0	1191077..1193773	-	898	110667930	rad3	HQ1981A	-	DNA repair helicase Rad3
955	 50.24	0	1195763..1196182	+	139	110667931	-	HQ1983A	-	transposase
956	 48.48	0	1196522..1196851	-	109	110667932	-	HQ1984A	-	hypothetical protein
957	 48.74	0	1196851..1198044	-	397	110667933	acaB	HQ1985A	-	acetyl-CoA C-acyltransferase
958	 47.18	0	1198547..1199752	-	401	110667934	-	HQ1986A	-	major facilitator superfamily transporter
959	 52.50	0	1199849..1200829	-	326	110667935	qor	HQ1987A	-	NADPH:quinone reductase
960	 47.98	0	1201277..1202689	-	470	110667936	-	HQ1988A	-	crotonobetainyl-CoA:carnitine CoA-transferase/alpha-methylacyl-CoA racemase
961	 49.92	0	1202700..1203887	-	395	110667937	ugpC	HQ1989A	-	ABC-type sugar/sn-glycerol-3-phosphate transport system, ATP-binding protein
962	 45.78	0	1204041..1204940	-	299	110667938	ugpE	HQ1990A	-	ABC-type sugar/sn-glycerol-3-phosphate transport system, periplasmic protein
963	 46.17	0	1204937..1205902	-	321	110667939	ugpA	HQ1991A	-	ABC-type sugar/sn-glycerol-3-phosphate transport system, periplasmic protein
964	 45.92	0	1206028..1207401	-	457	110667940	ugpB	HQ1992A	-	ABC-type sugar/sn-glycerol-3-phosphate transport system, periplasmic protein
965	 45.44	0	1207602..1208369	-	255	110667941	-	HQ1993A	-	transcription regulator
966	 50.00	0	1208862..1208933	+	23	110667942	-	HQ1993B	-	ISH9-type transposase (nonfunctional, N-terminal part)
967	 45.41	0	1210536..1211123	-	195	110667943	-	HQ1994A	-	hypothetical protein
968	 50.70	0	1211215..1211427	-	70	110667944	-	HQ1995A	-	hypothetical protein
969	 46.94	0	1212274..1213890	+	538	110667945	-	HQ1996A	-	metal-dependent RNase
970	 48.12	0	1214014..1214385	+	123	110667946	-	HQ1997A	-	hypothetical protein
971	 44.36	-1	1214439..1214855	+	138	110667947	dcd	HQ1998A	-	deoxycytidine triphosphate deaminase
972	 51.13	0	1214993..1215745	+	250	110667948	-	HQ1999A	-	dehydrogenase
973	 44.96	0	1216019..1216474	+	151	110667949	-	HQ2000A	-	hypothetical protein
974	 45.04	0	1217113..1217505	-	130	110667950	fdx	HQ2001A	-	ferredoxin (2Fe-2S)
975	 47.79	0	1218101..1218958	+	285	110667951	-	HQ2002A	-	hypothetical protein
976	 42.47	-1	1219079..1219297	-	72	110667952	-	HQ2003A	-	hypothetical protein
977	 53.38	+1	1219396..1220328	+	310	110667953	nolA	HQ2004A	-	NADH dehydrogenase 32K chain-like protein
978	 47.23	0	1220325..1221065	+	246	110667954	-	HQ2005A	-	hypothetical protein
979	 51.84	0	1221156..1221863	-	235	110667955	-	HQ2006A	-	S-adenosylmethionine-dependent methyltransferase
980	 46.83	0	1221865..1223583	-	572	110667956	moaA	HQ2007A	-	molybdopterin-based tungsten cofactor biosynthesis protein
981	 50.18	0	1223658..1223930	+	90	110667957	-	HQ2008A	-	hypothetical protein
982	 46.20	0	1223961..1224473	+	170	110667958	bcp	HQ2009A	-	thioredoxin-dependent hydroperoxide peroxidase
983	 45.67	0	1225086..1225985	+	299	110667959	uvsE	HQ2011A	-	putative UV damage endonuclease
984	 46.53	0	1227235..1227378	-	47	110667960	-	HQ2012A	-	hypothetical protein
985	 47.62	0	1227489..1227635	-	48	110667961	-	HQ2013A	-	hypothetical protein
986	 50.38	0	1227790..1229109	-	439	110667962	ywaD	HQ2014A	-	peptidase
987	 40.00	-2	1229220..1229744	+	174	110667963	-	HQ2015A	-	tRNA splicing protein, cyclic phosphodiesterase
988	 49.09	0	1229891..1230055	-	54	110667964	-	HQ2016A	-	hypothetical protein
989	 49.34	0	1230382..1231974	+	530	110667965	-	HQ2017A	-	hypothetical protein
990	 49.86	0	1231971..1232696	+	241	110667966	salX	HQ2018A	-	peptide ABC transporter ATP-binding protein
991	 48.28	0	1232725..1233828	+	367	110667967	salY	HQ2019A	-	peptide ABC transporter permease
992	 48.07	0	1234053..1235477	-	474	110667968	-	HQ2020A	-	beta,beta-carotene 9',10'-dioxygenase 2
993	 49.29	0	1237785..1238204	-	139	110667969	uspA	HQ2022A	-	universal stress protein
994	 50.69	0	1238500..1239957	+	485	110667970	mntH	HQ2023A	-	manganese transporter NRAMP
995	 52.19	0	1240690..1242057	-	455	110667971	ppsA2	HQ2024A	-	pyruvate, water dikinase (phosphoenolpyruvate synthase)
996	 51.46	0	1242068..1243060	-	330	110667972	gapB	HQ2025A	-	glyceraldehyde-3-phosphate dehydrogenase
997	 48.04	0	1244425..1245138	+	237	110667973	-	HQ2026A	-	phosphotransferase domain-containing protein
998	 42.66	-1	1245338..1247224	+	628	110667974	-	HQ2027A	-	ATP/GTP-binding protein
999	 47.84	0	1247592..1247984	-	130	110667975	nudF	HQ2028A	-	ADP-ribose pyrophosphatase
1000	 44.35	-1	1248221..1248565	+	114	110667976	cad	HQ2029A	-	pterin-4a-carbinolamine dehydratase
1001	 56.64	+2	1248719..1249546	-	275	110667977	-	HQ2030A	-	ISH9-type transposase
1002	 47.02	0	1250232..1252466	-	744	110667978	amyA	HQ2031A	-	alpha amylase
1003	 45.54	0	1252820..1253032	-	70	110667979	xseAs	HQ2032A	-	exonuclease VII small subunit
1004	 44.19	-1	1253029..1254207	-	392	110667980	xseAl	HQ2033A	-	exodeoxyribonuclease VII large subunit
1005	 47.69	0	1254523..1255539	+	338	110667981	-	HQ2034A	-	hypothetical protein
1006	 47.70	0	1255536..1256579	+	347	110667982	-	HQ2035A	-	mandelate racemase/muconate lactonizing enzyme family protein
1007	 45.14	0	1257198..1258112	+	304	110667983	elaC	HQ2036A	-	ribonuclease Z (RNase Z) (tRNA 3 endonuclease)
1008	 48.11	0	1258376..1260148	-	590	110667984	-	HQ2037A	-	hypothetical protein
1009	 47.74	0	1260394..1261323	-	309	110667985	cysA	HQ2038A	-	thiosulfate sulfurtransferase
1010	 49.07	0	1261454..1261828	-	124	110667986	-	HQ2039A	-	hypothetical protein
1011	 48.02	0	1261925..1262884	-	319	110667987	sppA	HQ2040A	-	signal peptide peptidase
1012	 47.35	0	1264711..1265466	+	251	110667988	cinA	HQ2043A	-	CinA-like domain-containing protein
1013	 45.19	0	1265675..1266610	+	311	110667989	-	HQ2044A	-	hypothetical protein
1014	 42.70	-1	1266813..1267538	-	241	110667990	-	HQ2045A	-	phosphoesterase
1015	 45.62	0	1267848..1268441	-	197	110667991	cynT	HQ2046A	-	carbonic anhydrase
1016	 51.82	0	1268610..1268912	-	100	110667992	trzA	HQ2047A	-	Atrazine chlorohydrolase
1017	 49.73	0	1268958..1269140	-	60	110667993	trzA	HQ2048A	-	N-ethylammeline chlorohydrolase (S-triazine hydrolase )
1018	 49.21	0	1269425..1270759	+	444	110667994	guaD	HQ2049A	-	N-ethylammeline chlorohydrolase
1019	 45.05	0	1270976..1271521	+	181	110667995	apt	HQ2050A	-	adenine phosphoribosyltransferase
1020	 56.03	+1	1272280..1273605	+	441	110667996	-	HQ2051A	-	IS1341-type transposase
1021	 50.36	0	1273688..1274932	-	414	110667997	pitA	HQ2052A	-	phosphate permease-like protein
1022	 53.95	+1	1275420..1276229	-	269	110667998	-	HQ2053A	-	signal-transducing histidine kinase/response regulator
1023	 54.30	+1	1276307..1277155	-	282	110667999	-	HQ2054A	-	signal-transducing histidine kinase
1024	 48.76	0	1277657..1278019	+	120	110668000	-	HQ2055A	-	hypothetical protein
1025	 53.49	+1	1279161..1279676	+	171	110668001	-	HQ2056A	-	hypothetical protein
1026	 48.21	0	1281026..1281415	-	129	110668002	-	HQ2057A	-	hypothetical protein
1027	 46.02	0	1281749..1282339	+	196	110668003	-	HQ2058A	-	hypothetical protein
1028	 46.50	0	1282509..1283123	+	204	110668004	-	HQ2059A	-	hypothetical protein
1029	 43.37	-1	1283490..1283768	+	92	110668005	-	HQ2060A	-	hypothetical protein
1030	 51.79	0	1284055..1284249	-	64	110668006	-	HQ2061A	-	hypothetical protein
1031	 56.05	+1	1284236..1284970	-	244	110668007	ldcA	HQ2062A	-	LD-carboxypeptidase
1032	 55.32	+1	1284995..1285135	-	46	110668008	-	HQ2063A	-	hypothetical protein
1033	 49.53	0	1285457..1286098	-	213	110668009	rhtB	HQ2064A	-	threonine/homoserine/homoserine lactone efflux protein
1034	 52.69	+1	1286435..1286713	-	92	110668010	-	HQ2065A	-	hypothetical protein
1035	 52.49	0	1287546..1288610	+	354	110668011	serA	HQ2066A	-	phosphoglycerate dehydrogenase
1036	 47.38	0	1288822..1289241	-	139	110668012	-	HQ2067A	-	hypothetical protein
1037	 56.78	+2	1289698..1290324	+	208	110668013	-	HQ2068A	-	hypothetical protein
1038	 57.98	+2	1290364..1290720	+	118	110668014	-	HQ2069A	-	hypothetical protein
1039	 46.83	0	1290858..1291109	+	83	110668015	-	HQ2070A	-	hypothetical protein
1040	 51.08	0	1291268..1291639	-	123	110668016	-	HQ2071A	-	hypothetical protein
1041	 55.26	+1	1291769..1293118	-	449	110668017	-	HQ2072A	-	IS1341-type transposase
1042	 41.59	-1	1294080..1294406	+	108	110668018	-	HQ2073A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.