IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
887	 49.13	0	1105961..1108309	-	782	110667863	malA	HQ1911A	-	alpha-glucosidase
888	 55.39	+1	1109096..1110115	+	339	110667864	-	HQ1912A	-	hypothetical protein
889	 54.88	+1	1110129..1110425	-	98	110667865	-	HQ1913A	-	hypothetical protein
890	 50.73	0	1110791..1111543	+	250	110667866	ski	HQ1914A	-	two-component system sensor kinase
891	 51.39	0	1111864..1112727	+	287	110667867	-	HQ1915A	-	hypothetical protein
892	 49.76	0	1113104..1113517	+	137	110667868	uspA	HQ1916A	-	universal stress protein
893	 50.71	0	1113999..1114769	+	256	110667869	-	HQ1918A	-	hypothetical protein
894	 44.59	-1	1114894..1116723	+	609	110667870	speE	HQ1919A	-	spermidine synthase
895	 41.95	-1	1116726..1117247	+	173	110667871	-	HQ1920A	-	hypothetical protein
896	 43.78	-1	1117285..1119456	+	723	110667872	-	HQ1921A	-	hypothetical protein
897	 46.17	0	1119512..1120477	+	321	110667873	-	HQ1922A	-	hypothetical protein
898	 46.12	0	1120548..1121024	-	158	110667874	-	HQ1923A	-	hypothetical protein
899	 60.87	+2	1122957..1123025	-	22	110667875	-	HQ1924E	-	IS1341-type transposase (nonfunctional,N-terminal part)
900	 42.71	-1	1123830..1124330	+	166	110667876	-	HQ1925A	-	hypothetical protein
901	 49.01	0	1124937..1126658	+	573	110667877	-	HQ1926A	-	hypothetical protein
902	 53.00	+1	1127007..1127606	+	199	110667878	-	HQ1927A	-	IS1341-type transposase (nonfunctional,N-terminal part)
903	 49.20	0	1128768..1129391	-	207	110667879	msrA	HQ1929A	-	peptide methionine sulfoxide reductase (S-form specific)
904	 50.36	0	1129421..1129831	-	136	110667880	msrB	HQ1930A	-	peptide methionine sulfoxide reductase (R-form specific)
905	 44.77	-1	1129891..1130196	-	101	110667881	cutA	HQ1931A	-	divalent divalent cation tolerance protein
906	 41.96	-1	1130419..1130847	-	142	110667882	-	HQ1932A	-	light-and/or oxygen-sensing histidine kinase
907	 49.35	0	1131335..1133263	-	642	110667883	-	HQ1933A	-	X-Pro dipeptidyl-peptidase
908	 46.28	0	1133763..1135175	+	470	110667884	xup	HQ1934A	-	xanthine/uracil permease family protein
909	 42.82	-1	1135435..1135803	+	122	110667885	-	HQ1935A	-	hypothetical protein
910	 44.63	-1	1135856..1137280	+	474	110667886	pyrC	HQ1936A	-	dihydroorotase
911	 44.71	-1	1137420..1138175	+	251	110667887	-	HQ1937A	-	transcription regulator
912	 47.04	0	1138553..1139311	-	252	110667888	-	HQ1938A	-	cyclase
913	 50.10	0	1139657..1140706	+	349	110667889	qor	HQ1939A	-	NADPH:quinone reductase
914	 46.17	0	1140779..1141978	+	399	110667890	-	HQ1940A	-	crotonobetainyl-CoA:carnitine CoA-transferase/alpha-methylacyl-CoA racemase
915	 46.94	0	1142156..1143316	+	386	110667891	xdhC	HQ1941A	-	xanthine and Co dehydrogenase maturation factor
916	 48.17	0	1143417..1144319	+	300	110667892	coxM	HQ1942A	-	aerobic-type carbon monoxide dehydrogenase,medium subunit
917	 43.63	-1	1144413..1144946	+	177	110667893	coxS	HQ1943A	-	aerobic-type carbon monoxide dehydrogenase,small subunit
918	 46.44	0	1144946..1147417	+	823	110667894	coxL	HQ1944A	-	aerobic-type carbon monoxide dehydrogenase,large subunit
919	 48.01	0	1147516..1148142	-	208	110667895	mobA	HQ1945A	-	molybdopterin-guanine dinucleotide biosynthesis protein A
920	 40.53	-2	1149104..1149937	+	277	110667896	-	HQ1946A	-	response regulator / transcription regulator
921	 49.44	0	1150487..1151200	+	237	110667897	-	HQ1947A	-	hypothetical protein
922	 45.21	0	1151454..1151756	-	100	110667898	-	HQ1948A	-	hypothetical protein
923	 41.93	-1	1151753..1152136	-	127	110667899	-	HQ1949A	-	ArsR family transcriptional regulator
924	 48.72	0	1152667..1154031	-	454	110667900	-	HQ1950A	-	amino acid transporter
925	 46.55	0	1154515..1155225	-	236	110667901	trkA	HQ1951A	-	Trk-type potassium transport system, NAD-binding subunit
926	 45.19	0	1155669..1157312	+	547	110667902	kch	HQ1952A	-	Kef-type K+ transporter NAD-binding component
927	 47.14	0	1157551..1157760	-	69	110667903	-	HQ1953A	-	hypothetical protein
928	 49.07	0	1157924..1159270	-	448	110667904	mntH	HQ1954A	-	manganese transporter NRAMP
929	 49.48	0	1160042..1161856	+	604	110667905	-	HQ1955A	-	sodium/anion symporter ( sulfate or citrate)
930	 50.46	0	1162124..1162777	+	217	110667906	trkA	HQ1956A	-	Trk-type potassium transport system, NAD-binding subunit
931	 52.13	0	1162851..1163297	-	148	110667907	usp	HQ1957A	-	stress response protein
932	 50.96	0	1163444..1164793	+	449	110667908	-	HQ1958A	-	hypothetical protein
933	 49.65	0	1165397..1165684	+	95	110667909	-	HQ1959A	-	hypothetical protein
934	 50.91	0	1165886..1166767	-	293	110667910	usp	HQ1960A	-	stress response protein
935	 45.68	0	1167018..1168370	-	450	110667911	-	HQ1961A	-	CBS domain-containing protein
936	 43.40	-1	1168698..1169174	+	158	110667912	-	HQ1962A	-	hypothetical protein
937	 43.94	-1	1169325..1169786	-	153	110667913	-	HQ1963A	-	hypothetical protein
938	 49.23	0	1170023..1170475	-	150	110667914	bcp	HQ1964A	-	peroxiredoxin-like protein
939	 46.54	0	1170733..1172178	-	481	110667915	rtcB	HQ1965A	-	RtcB-like protein
940	 48.71	0	1172505..1173473	-	322	110667916	-	HQ1966A	-	hypothetical protein
941	 47.06	0	1174045..1174809	-	254	110667917	-	HQ1968A	-	dehydrogenase
942	 45.62	0	1175121..1177025	+	634	110667918	-	HQ1969A	-	ABC-type multidrug transport system, ATP-binding and permease protein
943	 42.92	-1	1177308..1178162	+	284	110667919	-	HQ1970A	-	site-specific DNA-methyltransferase
944	 38.79	-2	1178326..1179462	-	378	110667920	-	HQ1971A	-	hypothetical protein
945	 49.71	0	1179797..1181335	+	512	110667921	aldH	HQ1972A	-	aldehyde dehydrogenase
946	 46.52	0	1182463..1183266	-	267	110667922	sfsA	HQ1973A	-	DNA-binding protein, stimulates sugar fermentation
947	 50.78	0	1183918..1184937	+	339	110667923	tauA	HQ1974A	-	ABC-type nitrate/sulfonate/bicarbonate transport system, substrate binding protein
948	 48.73	0	1184944..1185768	+	274	110667924	tauC	HQ1975A	-	ABC-type nitrate/sulfonate/bicarbonate transport system, permease protein
949	 48.67	0	1185765..1186514	+	249	110667925	tauB	HQ1976A	-	ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein
950	 50.89	0	1186589..1187260	+	223	110667926	tauC	HQ1977A	-	ABC-type nitrate/sulfonate/bicarbonate transport system, permease protein
951	 52.80	+1	1187281..1188030	-	249	110667927	-	HQ1978A	-	NCAIR mutase (PurE)-related protein
952	 53.20	+1	1188040..1189212	-	390	110667928	pncB	HQ1979A	-	nicotinate phosphoribosyltransferase
953	 50.42	0	1189517..1190821	-	434	110667929	-	HQ1980A	-	hypothetical protein
954	 47.83	0	1191077..1193773	-	898	110667930	rad3	HQ1981A	-	DNA repair helicase Rad3
955	 50.24	0	1195763..1196182	+	139	110667931	-	HQ1983A	-	transposase
956	 48.48	0	1196522..1196851	-	109	110667932	-	HQ1984A	-	hypothetical protein
957	 48.74	0	1196851..1198044	-	397	110667933	acaB	HQ1985A	-	acetyl-CoA C-acyltransferase
958	 47.18	0	1198547..1199752	-	401	110667934	-	HQ1986A	-	major facilitator superfamily transporter
959	 52.50	0	1199849..1200829	-	326	110667935	qor	HQ1987A	-	NADPH:quinone reductase
960	 47.98	0	1201277..1202689	-	470	110667936	-	HQ1988A	-	crotonobetainyl-CoA:carnitine CoA-transferase/alpha-methylacyl-CoA racemase
961	 49.92	0	1202700..1203887	-	395	110667937	ugpC	HQ1989A	-	ABC-type sugar/sn-glycerol-3-phosphate transport system, ATP-binding protein
962	 45.78	0	1204041..1204940	-	299	110667938	ugpE	HQ1990A	-	ABC-type sugar/sn-glycerol-3-phosphate transport system, periplasmic protein
963	 46.17	0	1204937..1205902	-	321	110667939	ugpA	HQ1991A	-	ABC-type sugar/sn-glycerol-3-phosphate transport system, periplasmic protein
964	 45.92	0	1206028..1207401	-	457	110667940	ugpB	HQ1992A	-	ABC-type sugar/sn-glycerol-3-phosphate transport system, periplasmic protein
965	 45.44	0	1207602..1208369	-	255	110667941	-	HQ1993A	-	transcription regulator
966	 50.00	0	1208862..1208933	+	23	110667942	-	HQ1993B	-	ISH9-type transposase (nonfunctional, N-terminal part)
967	 45.41	0	1210536..1211123	-	195	110667943	-	HQ1994A	-	hypothetical protein
968	 50.70	0	1211215..1211427	-	70	110667944	-	HQ1995A	-	hypothetical protein
969	 46.94	0	1212274..1213890	+	538	110667945	-	HQ1996A	-	metal-dependent RNase
970	 48.12	0	1214014..1214385	+	123	110667946	-	HQ1997A	-	hypothetical protein
971	 44.36	-1	1214439..1214855	+	138	110667947	dcd	HQ1998A	-	deoxycytidine triphosphate deaminase
972	 51.13	0	1214993..1215745	+	250	110667948	-	HQ1999A	-	dehydrogenase
973	 44.96	0	1216019..1216474	+	151	110667949	-	HQ2000A	-	hypothetical protein
974	 45.04	0	1217113..1217505	-	130	110667950	fdx	HQ2001A	-	ferredoxin (2Fe-2S)
975	 47.79	0	1218101..1218958	+	285	110667951	-	HQ2002A	-	hypothetical protein
976	 42.47	-1	1219079..1219297	-	72	110667952	-	HQ2003A	-	hypothetical protein
977	 53.38	+1	1219396..1220328	+	310	110667953	nolA	HQ2004A	-	NADH dehydrogenase 32K chain-like protein
978	 47.23	0	1220325..1221065	+	246	110667954	-	HQ2005A	-	hypothetical protein
979	 51.84	0	1221156..1221863	-	235	110667955	-	HQ2006A	-	S-adenosylmethionine-dependent methyltransferase
980	 46.83	0	1221865..1223583	-	572	110667956	moaA	HQ2007A	-	molybdopterin-based tungsten cofactor biosynthesis protein
981	 50.18	0	1223658..1223930	+	90	110667957	-	HQ2008A	-	hypothetical protein
982	 46.20	0	1223961..1224473	+	170	110667958	bcp	HQ2009A	-	thioredoxin-dependent hydroperoxide peroxidase
983	 45.67	0	1225086..1225985	+	299	110667959	uvsE	HQ2011A	-	putative UV damage endonuclease
984	 46.53	0	1227235..1227378	-	47	110667960	-	HQ2012A	-	hypothetical protein
985	 47.62	0	1227489..1227635	-	48	110667961	-	HQ2013A	-	hypothetical protein
986	 50.38	0	1227790..1229109	-	439	110667962	ywaD	HQ2014A	-	peptidase
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.