IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.79   STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
822	 44.95	0	1029203..1029727	+	174	110667798	msrA	HQ1843A	-	methionine sulfoxide reductase A
823	 47.25	0	1029884..1031263	-	459	110667799	proA	HQ1844A	-	glutamate-5-semialdehyde dehydrogenase
824	 45.52	0	1031473..1032432	-	319	110667800	proB	HQ1845A	-	glutamate 5-kinase
825	 46.33	0	1032425..1033201	-	258	110667801	proC	HQ1846A	-	pyrroline-5-carboxylate reductase
826	 49.19	0	1033487..1034785	+	432	110667802	-	HQ1847A	-	putative acetamidase/formamidase
827	 46.35	0	1034884..1035267	-	127	110667803	-	HQ1848A	-	hypothetical protein
828	 50.00	0	1035526..1036161	+	211	110667804	-	HQ1849A	-	hypothetical protein
829	 49.01	0	1036167..1037825	+	552	110667805	norM	HQ1850A	-	sodium-driven multidrug efflux pump
830	 49.02	0	1037875..1040418	-	847	110667806	-	HQ1851A	-	helicase
831	 49.65	0	1040539..1042101	-	520	110667807	-	HQ1852A	-	DNA repair and recombination protein radA
832	 47.58	0	1042503..1042853	+	116	110667808	-	HQ1853A	-	hypothetical protein
833	 44.98	0	1042956..1044080	+	374	110667809	-	HQ1854A	-	hypothetical protein
834	 49.24	0	1044205..1045323	+	372	110667810	degP	HQ1855A	-	serine proteinase
835	 46.95	0	1045492..1046916	-	474	110667811	gcvT	HQ1856A	-	aminomethyltransferase, glycin cleavage system T protein
836	 46.67	0	1047700..1047849	-	49	110667812	-	HQ1858A	-	IS200-type transposase (nonfunctional,N-terminal part)
837	 55.38	+1	1048040..1049350	+	436	110667813	-	HQ1859A	-	IS1341-type transposase
838	 40.91	-2	1049381..1049512	+	43	110667814	-	HQ1860A	-	hypothetical protein
839	 44.44	-1	1050093..1050758	-	221	110667815	-	HQ1861A	-	DNA binding protein, transcriptional regulator
840	 50.00	0	1051242..1052381	+	379	110667816	nifS	HQ1862A	-	cysteine desulfurase, class V aminotransferase
841	 50.45	0	1052452..1053117	-	221	110667817	-	HQ1863A	-	DNA binding protein, bacterio-opsin activator-like
842	 49.65	0	1053417..1054427	+	336	110667818	brp	HQ1864A	-	bop gene expression regulator
843	 43.46	-1	1054592..1054897	-	101	110667819	-	HQ1865A	-	hypothetical protein
844	 50.26	0	1055014..1055208	+	64	110667820	csp	HQ1866A	-	cold shock protein
845	 49.37	0	1055344..1056297	-	317	110667821	tfbA	HQ1867A	-	transcription initiation factor TFB
846	 44.15	-1	1056801..1057475	+	224	110667822	-	HQ1868A	-	RNA methylase
847	 48.13	0	1058159..1059949	-	596	110667823	-	HQ1869A	-	rhomboid family protein/intramembrane serine protease
848	 40.86	-2	1059983..1060261	-	92	110667824	-	HQ1870A	-	hypothetical protein
849	 43.81	-1	1060319..1060528	-	69	110667825	-	HQ1871A	-	hypothetical protein
850	 49.68	0	1060848..1062572	+	574	110667826	menF	HQ1872A	-	isochorismate synthase
851	 49.30	0	1062572..1064431	+	619	110667827	menD	HQ1873A	-	2-oxoglutarate decarboxylase; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
852	 49.56	0	1064560..1065477	+	305	110667828	menB	HQ1874A	-	naphthoate synthase
853	 49.69	0	1065619..1066578	+	319	110667829	menA	HQ1875A	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
854	 48.73	0	1066578..1067681	+	367	110667830	menC	HQ1876A	-	O-succinylbenzoate-CoA synthase (OSB synthase; 4-(2'-carboxyphenyl)-4-oxybutyric acid synthase)
855	 44.72	-1	1068020..1068862	-	280	110667831	-	HQ1877A	-	hypothetical protein
856	 43.76	-1	1069476..1070012	-	178	110667832	pyrI	HQ1878A	-	aspartate carbamoyltransferase regulatory subunit
857	 48.42	0	1070009..1070923	-	304	110667833	pyrB	HQ1879A	-	aspartate carbamoyltransferase catalytic subunit
858	 48.33	0	1071120..1072379	-	419	110667834	gdhA	HQ1880A	-	glutamate dehydrogenase (NADP+)
859	 48.62	0	1072493..1073434	-	313	110667835	fbp	HQ1881A	-	fructose-1,6-bisphosphatase
860	 47.06	0	1073681..1073986	+	101	110667836	-	HQ1882A	-	hypothetical protein
861	 44.01	-1	1074198..1074656	-	152	110667837	-	HQ1883A	-	hypothetical protein
862	 48.55	0	1074780..1075640	-	286	110667838	ubiA	HQ1884A	-	prenyltransferase
863	 55.69	+1	1075972..1076463	+	163	110667839	-	HQ1885A	-	hypothetical protein
864	 47.32	0	1076615..1077136	+	173	110667840	mtfK1	HQ1886A	-	FKBP-type peptidylprolyl isomerase 1
865	 39.54	-2	1078117..1078422	+	101	110667841	-	HQ1887A	-	hypothetical protein
866	 51.18	0	1079505..1080311	+	268	110667842	kch	HQ1888A	-	Kef-type K+ transporter NAD-binding component
867	 60.04	+2	1082006..1083001	-	331	110667843	-	HQ1889A	-	hypothetical protein
868	 57.53	+2	1083470..1083907	+	145	110667844	-	HQ1890A	-	hypothetical protein
869	 55.68	+1	1085776..1086585	-	269	110667845	udp	HQ1892A	-	uridine phosphorylase
870	 48.99	0	1088988..1089332	+	114	110667846	-	HQ1893A	-	hypothetical protein
871	 62.25	+2	1089657..1090358	-	233	110667847	-	HQ1894A	-	hypothetical protein
872	 58.33	+2	1090563..1090826	-	87	110667848	-	HQ1895A	-	hypothetical protein
873	 62.39	+2	1091087..1091320	-	77	110667849	-	HQ1896A	-	hypothetical protein
874	 56.98	+2	1091958..1092494	-	178	110667850	-	HQ1898A	-	hypothetical protein
875	 58.60	+2	1092871..1093440	-	189	110667851	-	HQ1899A	-	hypothetical protein
876	 66.83	+2	1093697..1094296	-	199	110667852	-	HQ1900A	-	hypothetical protein
877	 65.87	+2	1094346..1094597	-	83	110667853	-	HQ1901A	-	hypothetical protein
878	 59.31	+2	1094699..1095133	-	144	110667854	-	HQ1902A	-	hypothetical protein
879	 55.03	+1	1095126..1095821	-	231	110667855	-	HQ1903A	-	hypothetical protein
880	 59.93	+2	1095922..1096218	-	98	110667856	-	HQ1904A	-	hypothetical protein
881	 53.84	+1	1097313..1098029	+	238	110667857	-	HQ1905A	-	S-adenosylmethionine-dependent methyltransferase-like protein
882	 53.09	+1	1098414..1098899	-	161	110667858	-	HQ1906A	-	hypothetical protein
883	 46.18	0	1100085..1100411	+	108	110667859	-	HQ1907A	-	hypothetical protein
884	 43.59	-1	1100565..1101188	+	207	110667860	-	HQ1908A	-	hypothetical protein
885	 50.64	0	1101824..1102135	-	103	110667861	nuc	HQ1909A	-	endonuclease staphylococcal nuclease-like
886	 48.57	0	1103407..1104843	+	478	110667862	-	HQ1910A	-	signal-transducing histidine kinase
887	 49.13	0	1105961..1108309	-	782	110667863	malA	HQ1911A	-	alpha-glucosidase
888	 55.39	+1	1109096..1110115	+	339	110667864	-	HQ1912A	-	hypothetical protein
889	 54.88	+1	1110129..1110425	-	98	110667865	-	HQ1913A	-	hypothetical protein
890	 50.73	0	1110791..1111543	+	250	110667866	ski	HQ1914A	-	two-component system sensor kinase
891	 51.39	0	1111864..1112727	+	287	110667867	-	HQ1915A	-	hypothetical protein
892	 49.76	0	1113104..1113517	+	137	110667868	uspA	HQ1916A	-	universal stress protein
893	 50.71	0	1113999..1114769	+	256	110667869	-	HQ1918A	-	hypothetical protein
894	 44.59	-1	1114894..1116723	+	609	110667870	speE	HQ1919A	-	spermidine synthase
895	 41.95	-1	1116726..1117247	+	173	110667871	-	HQ1920A	-	hypothetical protein
896	 43.78	-1	1117285..1119456	+	723	110667872	-	HQ1921A	-	hypothetical protein
897	 46.17	0	1119512..1120477	+	321	110667873	-	HQ1922A	-	hypothetical protein
898	 46.12	0	1120548..1121024	-	158	110667874	-	HQ1923A	-	hypothetical protein
899	 60.87	+2	1122957..1123025	-	22	110667875	-	HQ1924E	-	IS1341-type transposase (nonfunctional,N-terminal part)
900	 42.71	-1	1123830..1124330	+	166	110667876	-	HQ1925A	-	hypothetical protein
901	 49.01	0	1124937..1126658	+	573	110667877	-	HQ1926A	-	hypothetical protein
902	 53.00	+1	1127007..1127606	+	199	110667878	-	HQ1927A	-	IS1341-type transposase (nonfunctional,N-terminal part)
903	 49.20	0	1128768..1129391	-	207	110667879	msrA	HQ1929A	-	peptide methionine sulfoxide reductase (S-form specific)
904	 50.36	0	1129421..1129831	-	136	110667880	msrB	HQ1930A	-	peptide methionine sulfoxide reductase (R-form specific)
905	 44.77	-1	1129891..1130196	-	101	110667881	cutA	HQ1931A	-	divalent divalent cation tolerance protein
906	 41.96	-1	1130419..1130847	-	142	110667882	-	HQ1932A	-	light-and/or oxygen-sensing histidine kinase
907	 49.35	0	1131335..1133263	-	642	110667883	-	HQ1933A	-	X-Pro dipeptidyl-peptidase
908	 46.28	0	1133763..1135175	+	470	110667884	xup	HQ1934A	-	xanthine/uracil permease family protein
909	 42.82	-1	1135435..1135803	+	122	110667885	-	HQ1935A	-	hypothetical protein
910	 44.63	-1	1135856..1137280	+	474	110667886	pyrC	HQ1936A	-	dihydroorotase
911	 44.71	-1	1137420..1138175	+	251	110667887	-	HQ1937A	-	transcription regulator
912	 47.04	0	1138553..1139311	-	252	110667888	-	HQ1938A	-	cyclase
913	 50.10	0	1139657..1140706	+	349	110667889	qor	HQ1939A	-	NADPH:quinone reductase
914	 46.17	0	1140779..1141978	+	399	110667890	-	HQ1940A	-	crotonobetainyl-CoA:carnitine CoA-transferase/alpha-methylacyl-CoA racemase
915	 46.94	0	1142156..1143316	+	386	110667891	xdhC	HQ1941A	-	xanthine and Co dehydrogenase maturation factor
916	 48.17	0	1143417..1144319	+	300	110667892	coxM	HQ1942A	-	aerobic-type carbon monoxide dehydrogenase,medium subunit
917	 43.63	-1	1144413..1144946	+	177	110667893	coxS	HQ1943A	-	aerobic-type carbon monoxide dehydrogenase,small subunit
918	 46.44	0	1144946..1147417	+	823	110667894	coxL	HQ1944A	-	aerobic-type carbon monoxide dehydrogenase,large subunit
919	 48.01	0	1147516..1148142	-	208	110667895	mobA	HQ1945A	-	molybdopterin-guanine dinucleotide biosynthesis protein A
920	 40.53	-2	1149104..1149937	+	277	110667896	-	HQ1946A	-	response regulator / transcription regulator
921	 49.44	0	1150487..1151200	+	237	110667897	-	HQ1947A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.