IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
769	 51.79	0	971073..971798	+	241	110667745	-	HQ1791A	-	hypothetical protein
770	 49.03	0	971858..972475	+	205	110667746	-	HQ1792A	-	S-adenosylmethionine-dependent methyltransferase
771	 49.30	0	972704..973417	-	237	110667747	thiJ	HQ1793A	-	chaperone
772	 48.94	0	973545..975146	+	533	110667748	crtI	HQ1794A	-	phytoene dehydrogenase (phytoene desaturase)
773	 47.64	0	975402..976079	+	225	110667749	tdk	HQ1795A	-	thymidine kinase
774	 50.25	0	976088..976690	+	200	110667750	-	HQ1796A	-	hypothetical protein
775	 49.70	0	976776..979079	+	767	110667751	-	HQ1797A	-	RecJ-like exonuclease
776	 47.72	0	979438..981147	+	569	110667752	hat	HQ1798A	-	histone acetyltransferase-like protein
777	 46.99	0	981229..981843	-	204	110667753	-	HQ1799A	-	acetyltransferase
778	 44.90	-1	981921..982733	-	270	110667754	-	HQ1800A	-	hypothetical protein
779	 47.64	0	982919..985078	+	719	110667755	-	HQ1801A	-	hypothetical protein
780	 48.31	0	985114..986181	+	355	110667756	pelA	HQ1802A	-	cell division protein pelota
781	 47.06	0	986238..986543	-	101	110667757	ocd	HQ1803A	-	ornithine cyclodeaminase
782	 49.06	0	986603..986869	-	88	110667758	-	HQ1804A	-	hypothetical protein
783	 48.25	0	987274..988044	+	256	110667759	cre	HQ1805A	-	creatinine amidohydrolase
784	 47.37	0	988293..988976	-	227	110667760	dsbG	HQ1806A	-	protein-disulfide isomerase
785	 44.75	-1	990226..990444	+	72	110667761	-	HQ1807A	-	hypothetical protein
786	 46.27	0	990480..990935	+	151	110667762	-	HQ1808A	-	hypothetical protein
787	 46.63	0	991219..991782	-	187	110667763	-	HQ1809A	-	hypothetical protein
788	 43.40	-1	991901..992347	+	148	110667764	hsp20	HQ1810A	-	hsp20-type chaperone
789	 46.74	0	992938..993519	+	193	110667765	lrp	HQ1811A	-	transcription regulator
790	 48.90	0	993516..994793	+	425	110667766	aspC	HQ1812A	-	PLP-dependent aminotransferase ( aspartate aminotransferase )
791	 46.13	0	995376..996875	+	499	110667767	-	HQ1813A	-	hypothetical protein
792	 46.30	0	996872..997534	+	220	110667768	salX	HQ1814A	-	peptide ABC transporter ATP-binding protein
793	 47.89	0	997531..998691	+	386	110667769	salY	HQ1815A	-	peptide ABC transporter permease
794	 49.13	0	998795..1000060	+	421	110667770	-	HQ1816A	-	glucose dehydrogenase, type B; L-sorbosone dehydrogenase
795	 48.91	0	1000781..1001191	+	136	110667771	-	HQ1816B	-	ISH9-type transposase (TCE34) (nonfunctional,N-terminal part)
796	 54.17	+1	1001621..1001980	-	119	110667772	-	HQ1817A	-	hypothetical protein
797	 45.71	0	1002351..1002980	-	209	110667773	-	HQ1818A	-	hypothetical protein
798	 42.44	-1	1003198..1005195	-	665	110667774	-	HQ1819A	-	hypothetical protein
799	 48.74	0	1006987..1007940	+	317	110667775	-	HQ1820A	-	short chain dehydrogenase/ reductase
800	 45.71	0	1007950..1009290	+	446	110667776	-	HQ1821A	-	hypothetical protein
801	 50.03	0	1010033..1011715	-	560	110667777	-	HQ1822A	-	alkaline phosphatase; cell surface glycoprotein
802	 53.03	+1	1012002..1012199	+	65	110667778	-	HQ1823A	-	hypothetical protein
803	 44.96	0	1013196..1013780	-	194	110667779	-	HQ1824A	-	hypothetical protein
804	 48.10	0	1014646..1015119	-	157	110667780	-	HQ1825A	-	hypothetical protein
805	 44.76	-1	1015234..1015653	-	139	110667781	-	HQ1826A	-	hypothetical protein
806	 47.07	0	1015690..1016082	-	130	110667782	-	HQ1827A	-	hypothetical protein
807	 46.74	0	1016232..1016783	+	183	110667783	cbs	HQ1828A	-	CBS domain-containing protein
808	 49.45	0	1016940..1018304	-	454	110667784	cbiA	HQ1829A	-	cobyrinic acid a,c-diamide synthase
809	 49.57	0	1018301..1018645	-	114	110667785	-	HQ1830A	-	cobalamin operon protein
810	 46.87	0	1018642..1019616	-	324	110667786	cbiG	HQ1831A	-	cobalamin biosynthesis protein CbiG
811	 48.20	0	1019609..1020496	-	295	110667787	cbiF	HQ1832A	-	precorrin-4 C11-methyltransferase
812	 48.23	0	1020493..1021197	-	234	110667788	cbiL	HQ1833A	-	cobalt-precorrin-2 C(20)-methyltransferase
813	 49.10	0	1021197..1021754	-	185	110667789	cbiT	HQ1834A	-	precorrin-8W decarboxylase
814	 50.08	0	1021908..1022570	+	220	110667790	cbiM	HQ1835A	-	cobalt transport protein CbiM
815	 49.83	0	1022567..1022863	+	98	110667791	cbiN	HQ1836A	-	CbiN protein ( ABC-type cobalt transport system, periplasmic component)
816	 45.36	0	1022847..1023578	+	243	110667792	cbiQ	HQ1837A	-	CbiQ protein ( ABC-type cobalt transport system permease protein 1)
817	 48.56	0	1023575..1024303	+	242	110667793	cbiO	HQ1838A	-	CbiO protein ( ABC-type cobalt transport system ATP-binding protein)
818	 43.33	-1	1024583..1024822	+	79	110667794	-	HQ1839A	-	hypothetical protein
819	 50.75	0	1025055..1025852	+	265	110667795	-	HQ1840A	-	short chain dehydrogenase/ reductase
820	 47.94	0	1025940..1027130	+	396	110667796	-	HQ1841A	-	major facilitator superfamily transporter
821	 45.96	0	1028119..1028601	+	160	110667797	folA	HQ1842A	-	dihydrofolate reductase
822	 44.95	0	1029203..1029727	+	174	110667798	msrA	HQ1843A	-	methionine sulfoxide reductase A
823	 47.25	0	1029884..1031263	-	459	110667799	proA	HQ1844A	-	glutamate-5-semialdehyde dehydrogenase
824	 45.52	0	1031473..1032432	-	319	110667800	proB	HQ1845A	-	glutamate 5-kinase
825	 46.33	0	1032425..1033201	-	258	110667801	proC	HQ1846A	-	pyrroline-5-carboxylate reductase
826	 49.19	0	1033487..1034785	+	432	110667802	-	HQ1847A	-	putative acetamidase/formamidase
827	 46.35	0	1034884..1035267	-	127	110667803	-	HQ1848A	-	hypothetical protein
828	 50.00	0	1035526..1036161	+	211	110667804	-	HQ1849A	-	hypothetical protein
829	 49.01	0	1036167..1037825	+	552	110667805	norM	HQ1850A	-	sodium-driven multidrug efflux pump
830	 49.02	0	1037875..1040418	-	847	110667806	-	HQ1851A	-	helicase
831	 49.65	0	1040539..1042101	-	520	110667807	-	HQ1852A	-	DNA repair and recombination protein radA
832	 47.58	0	1042503..1042853	+	116	110667808	-	HQ1853A	-	hypothetical protein
833	 44.98	0	1042956..1044080	+	374	110667809	-	HQ1854A	-	hypothetical protein
834	 49.24	0	1044205..1045323	+	372	110667810	degP	HQ1855A	-	serine proteinase
835	 46.95	0	1045492..1046916	-	474	110667811	gcvT	HQ1856A	-	aminomethyltransferase, glycin cleavage system T protein
836	 46.67	0	1047700..1047849	-	49	110667812	-	HQ1858A	-	IS200-type transposase (nonfunctional,N-terminal part)
837	 55.38	+1	1048040..1049350	+	436	110667813	-	HQ1859A	-	IS1341-type transposase
838	 40.91	-2	1049381..1049512	+	43	110667814	-	HQ1860A	-	hypothetical protein
839	 44.44	-1	1050093..1050758	-	221	110667815	-	HQ1861A	-	DNA binding protein, transcriptional regulator
840	 50.00	0	1051242..1052381	+	379	110667816	nifS	HQ1862A	-	cysteine desulfurase, class V aminotransferase
841	 50.45	0	1052452..1053117	-	221	110667817	-	HQ1863A	-	DNA binding protein, bacterio-opsin activator-like
842	 49.65	0	1053417..1054427	+	336	110667818	brp	HQ1864A	-	bop gene expression regulator
843	 43.46	-1	1054592..1054897	-	101	110667819	-	HQ1865A	-	hypothetical protein
844	 50.26	0	1055014..1055208	+	64	110667820	csp	HQ1866A	-	cold shock protein
845	 49.37	0	1055344..1056297	-	317	110667821	tfbA	HQ1867A	-	transcription initiation factor TFB
846	 44.15	-1	1056801..1057475	+	224	110667822	-	HQ1868A	-	RNA methylase
847	 48.13	0	1058159..1059949	-	596	110667823	-	HQ1869A	-	rhomboid family protein/intramembrane serine protease
848	 40.86	-2	1059983..1060261	-	92	110667824	-	HQ1870A	-	hypothetical protein
849	 43.81	-1	1060319..1060528	-	69	110667825	-	HQ1871A	-	hypothetical protein
850	 49.68	0	1060848..1062572	+	574	110667826	menF	HQ1872A	-	isochorismate synthase
851	 49.30	0	1062572..1064431	+	619	110667827	menD	HQ1873A	-	2-oxoglutarate decarboxylase; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
852	 49.56	0	1064560..1065477	+	305	110667828	menB	HQ1874A	-	naphthoate synthase
853	 49.69	0	1065619..1066578	+	319	110667829	menA	HQ1875A	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
854	 48.73	0	1066578..1067681	+	367	110667830	menC	HQ1876A	-	O-succinylbenzoate-CoA synthase (OSB synthase; 4-(2'-carboxyphenyl)-4-oxybutyric acid synthase)
855	 44.72	-1	1068020..1068862	-	280	110667831	-	HQ1877A	-	hypothetical protein
856	 43.76	-1	1069476..1070012	-	178	110667832	pyrI	HQ1878A	-	aspartate carbamoyltransferase regulatory subunit
857	 48.42	0	1070009..1070923	-	304	110667833	pyrB	HQ1879A	-	aspartate carbamoyltransferase catalytic subunit
858	 48.33	0	1071120..1072379	-	419	110667834	gdhA	HQ1880A	-	glutamate dehydrogenase (NADP+)
859	 48.62	0	1072493..1073434	-	313	110667835	fbp	HQ1881A	-	fructose-1,6-bisphosphatase
860	 47.06	0	1073681..1073986	+	101	110667836	-	HQ1882A	-	hypothetical protein
861	 44.01	-1	1074198..1074656	-	152	110667837	-	HQ1883A	-	hypothetical protein
862	 48.55	0	1074780..1075640	-	286	110667838	ubiA	HQ1884A	-	prenyltransferase
863	 55.69	+1	1075972..1076463	+	163	110667839	-	HQ1885A	-	hypothetical protein
864	 47.32	0	1076615..1077136	+	173	110667840	mtfK1	HQ1886A	-	FKBP-type peptidylprolyl isomerase 1
865	 39.54	-2	1078117..1078422	+	101	110667841	-	HQ1887A	-	hypothetical protein
866	 51.18	0	1079505..1080311	+	268	110667842	kch	HQ1888A	-	Kef-type K+ transporter NAD-binding component
867	 60.04	+2	1082006..1083001	-	331	110667843	-	HQ1889A	-	hypothetical protein
868	 57.53	+2	1083470..1083907	+	145	110667844	-	HQ1890A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.