IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.79   STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
31	 46.45	0	36859..37041	-	60	110667007	-	HQ1030A	-	hypothetical protein
32	 43.68	-1	37194..37541	+	115	110667008	-	HQ1031A	-	hypothetical protein
33	 47.95	0	37712..37930	+	72	110667009	-	HQ1032A	-	hypothetical protein
34	 45.38	0	37976..39295	-	439	110667010	cobW	HQ1033A	-	cobalamin synthesis protein/P47K
35	 46.13	0	39445..39741	+	98	110667011	-	HQ1034A	-	hypothetical protein
36	 46.95	0	39750..40733	+	327	110667012	arsA	HQ1035A	-	transport ATPase ( substrate arsenite)
37	 48.73	0	40822..42627	+	601	110667013	cstA	HQ1036A	-	carbon starvation protein A
38	 44.80	-1	42966..43628	-	220	110667014	-	HQ1037A	-	hypothetical protein
39	 46.88	0	43833..44216	-	127	110667015	-	HQ1038A	-	hypothetical protein
40	 44.00	-1	44335..44559	+	74	110667016	-	HQ1039A	-	hypothetical protein
41	 48.55	0	44645..45334	+	229	110667017	-	HQ1040A	-	hypothetical protein
42	 48.44	0	45461..45844	+	127	110667018	-	HQ1041A	-	transcription regulator
43	 52.69	+1	46022..47287	+	421	110667019	thrC	HQ1042A	-	threonine synthase
44	 50.09	0	47602..49206	-	534	110667020	serA	HQ1043A	-	D-3-phosphoglycerate dehydrogenase
45	 47.48	0	49394..50029	+	211	110667021	serB	HQ1044A	-	phosphoserine phosphatase
46	 48.87	0	50610..51362	-	250	110667022	topA	HQ1045A	-	DNA topoisomerase I
47	 48.54	0	51462..53816	-	784	110667023	mer3	HQ1046A	-	ATP-dependent DNA helicase
48	 47.50	0	54631..55851	+	406	110667024	endA	HQ1047A	-	tRNA splicing endonuclease
49	 46.50	0	55848..57692	+	614	110667025	trpS	HQ1048A	-	tryptophanyl-tRNA synthetase
50	 47.54	0	57894..59456	+	520	110667026	pheS	HQ1049A	-	phenylalanyl-tRNA synthetase subunit alpha
51	 47.88	0	59456..61345	+	629	110667027	pheT	HQ1050A	-	phenylalanyl-tRNA synthetase subunit beta
52	 45.83	0	61567..64359	+	930	110667028	valS	HQ1051A	-	valyl-tRNA synthetase
53	 47.02	0	64522..65595	-	357	110667029	pyrD	HQ1052A	-	dihydroorotate dehydrogenase 2
54	 42.93	-1	65685..65882	-	65	110667030	-	HQ1053A	-	hypothetical protein
55	 45.87	0	66468..66794	-	108	110667031	-	HQ1054A	-	nonhistone chromosomal protein
56	 47.99	0	73639..73986	-	115	110667032	-	HQ1055A	-	hypothetical protein
57	 49.09	0	75661..76263	+	200	110667033	-	HQ1057A	-	hypothetical protein
58	 49.27	0	77290..78450	-	386	110667034	pncB	HQ1058A	-	nicotinate phosphoribosyltransferase
59	 47.65	0	78675..80267	-	530	110667035	-	HQ1059A	-	hypothetical protein
60	 48.80	0	80336..80917	+	193	110667036	entB	HQ1060A	-	isochorismatase; nicotinamidase; N-carbamoylsarcosine amidase
61	 48.51	0	81197..82501	+	434	110667037	pyrC	HQ1061A	-	dihydroorotase
62	 47.71	0	82720..83526	-	268	110667038	-	HQ1062A	-	hypothetical protein
63	 46.45	0	83767..84132	+	121	110667039	usp	HQ1063A	-	homolog to stress response protein
64	 46.63	0	84129..84677	+	182	110667040	-	HQ1064A	-	protein N-acetyltransferase-like protein
65	 49.46	0	84768..85226	-	152	110667041	usp	HQ1065A	-	homolog to stress response protein
66	 46.07	0	85427..85897	+	156	110667042	usp	HQ1066A	-	stress response protein
67	 48.56	0	86162..87481	+	439	110667043	-	HQ1067A	-	hypothetical protein
68	 49.08	0	87646..88134	-	162	110667044	-	HQ1068A	-	hypothetical protein
69	 47.40	0	88364..88747	+	127	110667045	hsp20	HQ1069A	-	hsp20-type chaperone
70	 52.06	0	89157..89642	+	161	110667046	rps6R	HQ1070A	-	30S ribosomal protein S6e
71	 53.15	+1	89648..90091	+	147	110667047	-	HQ1071A	-	hypothetical protein
72	 49.10	0	90663..91328	-	221	110667048	-	HQ1072A	-	hypothetical protein
73	 49.75	0	91700..94117	+	805	110667049	-	HQ1073A	-	signal-transducing histidine kinase/response regulator
74	 49.60	0	94302..95420	-	372	110667050	pepB	HQ1074A	-	aminopeptidase ( leucyl aminopeptidase, aminopeptidase T)
75	 50.71	0	95702..96622	+	306	110667051	gnd	HQ1075A	-	6-phosphogluconate dehydrogenase-like protein
76	 51.61	0	96661..97251	+	196	110667052	fer	HQ1076A	-	ferredoxin (2Fe-2S)
77	 57.76	+2	98129..98521	+	130	110667053	-	HQ1077A	-	hypothetical protein
78	 62.11	+2	98514..98798	+	94	110667054	-	HQ1078A	-	hypothetical protein
79	 51.62	0	100119..100550	-	143	110667055	-	HQ1079A	-	prophage maintenance system killer protein
80	 44.90	-1	102218..103021	-	267	110667056	kch	HQ1080A	-	Kef-type K+ transporter NAD-binding component
81	 57.54	+2	103033..130512	-	9159	110667057	hmu	HQ1081A	-	halomucin
82	 46.62	0	131281..132447	-	388	110667058	capB	HQ1082A	-	capsular biosynthesis protein CapB / polyglutamate synthase
83	 44.06	-1	132450..133661	-	403	110667059	capC	HQ1083A	-	capsule polysaccharide biosynthesis protein, integral membrane protein
84	 47.80	0	134289..136838	+	849	110667060	bat	HQ1084A	-	bacterioopsin activator
85	 50.04	0	136890..138296	-	468	110667061	lpdA	HQ1085A	-	dihydrolipoamide dehydrogenase
86	 48.10	0	138596..139069	-	157	110667062	-	HQ1086A	-	hypothetical protein
87	 46.84	0	139066..139524	-	152	110667063	-	HQ1087A	-	hypothetical protein
88	 44.61	-1	139694..140296	+	200	110667064	-	HQ1088A	-	hypothetical protein
89	 51.58	0	141023..142003	-	326	110667065	-	HQ1090A	-	hypothetical protein
90	 45.53	0	142213..143040	-	275	110667066	nadE	HQ1091A	-	NAD(+) synthase (glutamine-hydrolyzing)
91	 52.24	0	143716..143916	-	66	110667067	-	HQ1092A	-	hypothetical protein
92	 47.63	0	144274..145371	+	365	110667068	-	HQ1093A	-	aldo/keto reductase family oxidoreductase
93	 49.00	0	145427..147022	-	531	110667069	-	HQ1094A	-	hypothetical protein
94	 48.77	0	147190..149016	-	608	110667070	-	HQ1095A	-	metalloprotease/metallo peptidase
95	 47.64	0	149259..149810	+	183	110667071	-	HQ1096A	-	hypothetical protein
96	 46.76	0	150375..152042	-	555	110667072	lysS	HQ1097A	-	lysine--tRNA ligase
97	 52.75	+1	152049..152774	-	241	110667073	pyrH	HQ1098A	-	uridylate kinase
98	 47.25	0	152956..153774	+	272	110667074	moaE	HQ1099A	-	molybdopterin converting factor, large subunit
99	 47.57	0	154132..154398	+	88	110667075	-	HQ1100A	-	hypothetical protein
100	 48.77	0	154723..155862	+	379	110667076	-	HQ1101A	-	membrane associated metalloprotease
101	 50.50	0	156210..157106	-	298	110667077	thiL	HQ1102A	-	thiamin-phosphate kinase
102	 47.66	0	157506..158552	+	348	110667078	-	HQ1103A	-	hypothetical protein
103	 50.44	0	158750..159205	+	151	110667079	rps19R	HQ1104A	-	30S ribosomal protein S19e
104	 50.14	0	159294..159656	+	120	110667080	-	HQ1105A	-	hypothetical protein
105	 48.02	0	159664..160269	+	201	110667081	-	HQ1106A	-	hypothetical protein
106	 48.05	0	160411..161715	+	434	110667082	hisS	HQ1107A	-	histidyl-tRNA synthetase
107	 47.17	0	161787..162617	+	276	110667083	truA	HQ1108A	-	tRNA pseudouridine synthase A
108	 52.20	0	162855..163013	+	52	110667084	-	HQ1109A	-	hypothetical protein
109	 45.78	0	163455..165254	+	599	110667085	pepF	HQ1110A	-	oligoendopeptidase
110	 47.26	0	165437..165637	+	66	110667086	-	HQ1111A	-	hypothetical protein
111	 48.79	0	166117..167106	-	329	110667087	-	HQ1112A	-	hypothetical protein
112	 48.89	0	167121..167345	-	74	110667088	-	HQ1113A	-	hypothetical protein
113	 44.44	-1	167788..168120	+	110	110667089	-	HQ1115A	-	hypothetical protein
114	 48.94	0	168189..169937	+	582	110667090	nirA	HQ1116A	-	ferredoxin--nitrite reductase
115	 49.33	0	169943..170242	+	99	110667091	-	HQ1117A	-	hypothetical protein
116	 49.12	0	170542..171168	+	208	110667092	lrp	HQ1118A	-	transcription regulator
117	 47.86	0	171256..174084	+	942	110667093	copA	HQ1119A	-	transport ATPase 1 ( substrates copper/metal cation)
118	 51.19	0	174224..175651	-	475	110667094	-	HQ1120A	-	ferredoxin-NAD+ reductase
119	 47.20	0	176613..177845	-	410	110667095	epf	HQ1121A	-	mRNA cleavage and polyadenylation specificity factor-like protein
120	 46.36	0	177895..178800	+	301	110667096	-	HQ1122A	-	hypothetical protein
121	 47.02	0	179827..180447	+	206	110667097	glo	HQ1123A	-	lyase/ dioxygenase ( lactoylglutathione lyase, aromatic compounds dioxygenase)
122	 51.73	0	180479..181516	-	345	110667098	adh	HQ1124A	-	alcohol dehydrogenase
123	 47.91	0	181706..183331	+	541	110667099	cat2	HQ1125A	-	cationic amino acid transport protein
124	 49.08	0	183334..183987	+	217	110667100	trkA	HQ1126A	-	K+ transport systems, NAD-binding protein
125	 48.21	0	184916..186199	-	427	110667101	oxlT	HQ1127A	-	major facilitator family oxalate/formate antiporter
126	 52.09	0	186373..187881	+	502	110667102	hoxF	HQ1128A	-	NAD-reducing hydrogenase, alpha subunit
127	 47.61	0	187881..188924	+	347	110667103	fdhAI	HQ1129A	-	NADH:ubiquinone oxidoreductase / formate dehydrogenase alpha subunit I
128	 48.64	0	188921..191239	+	772	110667104	fdhAII	HQ1130A	-	NADH:ubiquinone oxidoreductase / formate dehydrogenase alpha subunit II
129	 48.67	0	191242..192030	+	262	110667105	-	HQ1131A	-	hypothetical protein
130	 48.56	0	192141..194228	+	695	110667106	fdhA	HQ1132A	-	NADH:ubiquinone oxidoreductase / formate dehydrogenase, alpha subunit
48.79	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.