IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
659	 46.74	0	817511..818047	+	178	110667635	phaB2	HQ1678A	-	putative monovalent cation/H+ antiporter subunit B
660	 42.55	-1	818044..818412	+	122	110667636	phaC	HQ1679A	-	putative monovalent cation/H+ antiporter subunit C
661	 47.64	0	818405..819907	+	500	110667637	phaD	HQ1680A	-	putative monovalent cation/H+ antiporter subunit D
662	 47.21	0	819907..822003	+	698	110667638	phaA	HQ1681A	-	putative monovalent cation/H+ antiporter subunit D
663	 45.85	0	822000..823916	+	638	110667639	-	HQ1682A	-	putative monovalent cation/H+ antiporter subunit D
664	 49.65	0	824263..825420	-	385	110667640	dfp	HQ1683A	-	phosphopantothenoylcysteine decarboxylase/ phosphopantothenate--cysteine ligase
665	 49.17	0	825660..826202	+	180	110667641	-	HQ1684A	-	hypothetical protein
666	 48.88	0	826465..827802	+	445	110667642	trkA	HQ1685A	-	potassium transporter peripheral membrane component
667	 47.98	0	827966..829570	+	534	110667643	trkH	HQ1686A	-	Trk-type potassium transport system, permease protein TrkH
668	 48.79	0	829629..831038	-	469	110667644	aatA	HQ1687A	-	aspartyl-tRNA(Asn) amidotransferase subunit A
669	 50.14	0	831041..831409	-	122	110667645	aatC	HQ1688A	-	aspartyl-tRNA(Asn) amidotransferase subunit C
670	 49.57	0	832265..833305	+	346	110667646	tfbA	HQ1689A	-	transcription initiation factor TFB
671	 48.98	0	833584..834075	+	163	110667647	-	HQ1690A	-	mut/nudix family protein
672	 48.15	0	834232..835527	-	431	110667648	asnB	HQ1691A	-	asparagine synthase (glutamine-hydrolyzing)
673	 50.29	0	835531..836214	-	227	110667649	hisK	HQ1692A	-	histidinol phosphatase
674	 49.82	0	836349..838526	+	725	110667650	purL	HQ1693A	-	phosphoribosylformylglycinamidine synthase, component II
675	 40.48	-2	838574..838741	-	55	110667651	-	HQ1694A	-	hypothetical protein
676	 46.25	0	839061..839873	+	270	110667652	hisF	HQ1695A	-	imidazoleglycerol-phosphate synthase chain hisF
677	 50.17	0	840115..840405	-	96	110667653	rpoL	HQ1696A	-	DNA-directed RNA polymerase subunit L
678	 46.46	0	840947..841990	-	347	110667654	-	HQ1697A	-	metallo-beta-lactamase family protein / hydrolase
679	 46.25	0	842644..843123	-	159	110667655	-	HQ1698A	-	hypothetical protein
680	 46.63	0	843283..844899	-	538	110667656	alkK	HQ1699A	-	long-chain-fatty-acid--CoA ligase
681	 46.82	0	845090..846646	+	518	110667657	mre11	HQ1700A	-	DNA double-strand break repair protein mre11
682	 46.09	0	846647..849343	+	898	110667658	rad50	HQ1701A	-	chromosome segregation protein
683	 46.67	0	849423..849857	-	144	110667659	-	HQ1702A	-	hypothetical protein
684	 47.94	0	850513..850998	-	161	110667660	-	HQ1703A	-	hypothetical protein
685	 52.38	0	851152..851340	-	62	110667661	-	HQ1704A	-	hypothetical protein
686	 45.70	0	852239..858667	+	2142	110667662	polB1	HQ1705A	-	family B DNA-directed DNA polymerase
687	 46.47	0	859037..859972	+	311	110667663	sufC	HQ1706A	-	ABC-type transport system involved in Fe-S cluster assembly, ATP-binding protein
688	 46.89	0	860042..861472	+	476	110667664	sufB	HQ1707A	-	ABC-type transport system involved in Fe-S cluster assembly, permease protein I
689	 49.71	0	861475..862689	+	404	110667665	sufB	HQ1708A	-	ABC-type transport system involved in Fe-S cluster assembly, permease protein II
690	 47.44	0	862947..863492	+	181	110667666	-	HQ1709A	-	hypothetical protein
691	 45.03	0	863489..863941	+	150	110667667	sirR	HQ1710A	-	transcription regulator SirR
692	 45.32	0	864820..865503	-	227	110667668	-	HQ1711A	-	hypothetical protein
693	 46.23	0	865795..866655	+	286	110667669	-	HQ1712A	-	hypothetical protein
694	 48.04	0	866842..867834	-	330	110667670	-	HQ1713A	-	IS1341-type transposase
695	 48.50	0	868466..873034	-	1522	110667671	gltB	HQ1714A	-	glutamate synthase large subunit
696	 45.81	0	873197..874735	-	512	110667672	proS	HQ1715A	-	prolyl-tRNA synthetase
697	 48.75	0	875577..877496	+	639	110667673	epf2	HQ1716A	-	mRNA 3'-end processing factor-like protein
698	 46.03	0	878912..878974	-	20	110667674	-	HQ1717H	-	IS1341-type transposase (nonfunctional,N-terminal part)
699	 53.15	+1	879178..879399	+	73	110667675	-	HQ1718A	-	hypothetical protein
700	 47.62	0	879392..879790	+	132	110667676	-	HQ1719A	-	hypothetical protein
701	 48.39	0	879926..881233	+	435	110667677	citE	HQ1720A	-	citryl-CoA lyase
702	 47.51	0	881304..881684	-	126	110667678	glo	HQ1721A	-	lactoylglutathione lyase
703	 44.86	-1	881859..882587	+	242	110667679	hcpE	HQ1722A	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
704	 50.96	0	883042..883353	+	103	110667680	-	HQ1723A	-	hypothetical protein
705	 45.55	0	883528..884010	-	160	110667681	-	HQ1724A	-	transcription regulator
706	 48.02	0	885580..885831	+	83	162138286	tif1A2	HQ1727A	-	translation initiation factor IF-1A
707	 46.94	0	886143..887516	-	457	110667683	-	HQ1728A	-	glycosyl transferase
708	 46.89	0	887833..889860	+	675	110667684	adh	HQ1729A	-	alcohol dehydrogenase (NADP+)
709	 48.14	0	889857..890741	+	294	110667685	pgsA	HQ1730A	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase
710	 50.04	0	890964..892148	-	394	110667686	cdc6_	HQ1731A	-	cell division control protein cdc6-like protein
711	 53.06	+1	892218..893312	-	364	110667687	-	HQ1732A	-	hypothetical protein
712	 49.58	0	893316..894848	-	510	110667688	glpK	HQ1733A	-	glycerol kinase
713	 49.83	0	895287..897026	+	579	110667689	gpdA	HQ1734A	-	glycerol-3-phosphate dehydrogenase chain A
714	 50.69	0	897010..898317	+	435	110667690	gpdB	HQ1735A	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
715	 49.57	0	898322..899701	+	459	110667691	glpC	HQ1736A	-	sn-glycerol-3-phosphate dehydrogenase subunit C
716	 41.81	-1	899754..900449	-	231	110667692	phoU	HQ1737A	-	phosphate transport operon regulator
717	 45.47	0	900876..901691	+	271	110667693	-	HQ1738A	-	hypothetical protein
718	 46.64	0	902058..907475	+	1805	110667694	boa	HQ1739A	-	bacterio-opsin activator-like transcription regulator
719	 45.57	0	908131..908604	-	157	110667695	-	HQ1740A	-	transcription regulator
720	 49.43	0	908769..909992	-	407	110667696	-	HQ1741A	-	FAD-dependent monooxygenase
721	 47.14	0	910444..910827	+	127	110667697	-	HQ1742A	-	transcription regulator
722	 45.97	0	911831..914086	+	751	110667698	ppk	HQ1743A	-	polyphosphate kinase
723	 53.85	+1	914929..915123	+	64	110667699	-	HQ1744C	-	IS1341-type transposase (nonfunctional,N-terminal part)
724	 49.14	0	916434..916781	+	115	110667700	-	HQ1746A	-	hypothetical protein
725	 47.21	0	917154..918176	-	340	110667701	-	HQ1747A	-	hypothetical protein
726	 50.54	0	918346..919368	-	340	110667702	-	HQ1748A	-	hypothetical protein
727	 45.49	0	919733..920596	-	287	110667703	-	HQ1749A	-	hypothetical protein
728	 48.02	0	920593..921552	-	319	110667704	moxR	HQ1750A	-	MoxR-like ATPase
729	 46.63	0	921912..923099	-	395	110667705	-	HQ1751A	-	hypothetical protein
730	 46.24	0	923189..923800	-	203	110667706	smc	HQ1752A	-	chromosome partition protein
731	 49.08	0	923797..926196	-	799	110667707	-	HQ1753A	-	hypothetical protein
732	 48.30	0	926196..927992	-	598	110667708	-	HQ1754A	-	hypothetical protein
733	 48.48	0	928105..928797	-	230	110667709	hadL	HQ1755A	-	2-haloalkanoic acid dehalogenase
734	 48.72	0	929111..929968	-	285	110667710	metF	HQ1756A	-	5,10-methylenetetrahydrofolate reductase
735	 46.53	0	930150..931664	-	504	110667711	-	HQ1757A	-	hypothetical protein
736	 49.60	0	931742..932878	-	378	110667712	-	HQ1758A	-	deacylase
737	 50.82	0	932976..933707	+	243	110667713	-	HQ1759A	-	hypothetical protein
738	 49.96	0	933956..936553	+	865	110667714	gcvT	HQ1760A	-	aminomethyltransferase, glycin cleavage system T protein
739	 49.75	0	936786..939344	+	852	110667715	gcvT	HQ1761A	-	aminomethyltransferase, glycin cleavage system T protein
740	 49.34	0	939374..940660	+	428	110667716	ilvA	HQ1762A	-	threonine dehydratase
741	 47.68	0	941696..942169	+	157	110667717	usp	HQ1763A	-	stress response protein
742	 40.35	-2	942303..942473	-	56	110667718	-	HQ1764A	-	hypothetical protein
743	 47.77	0	942941..944713	+	590	110667719	opuD	HQ1765A	-	glycine betaine transport protein
744	 49.44	0	945731..946264	-	177	110667720	-	HQ1766A	-	hypothetical protein
745	 49.98	0	946278..948788	-	836	110667721	folCP	HQ1767A	-	folylpolyglutamate synthase / dihydropteroate synthase
746	 47.79	0	948994..950736	+	580	110667722	fhs	HQ1768A	-	formyltetrahydrofolate synthetase
747	 45.14	0	951390..951770	-	126	110667723	psp	HQ1769A	-	ribonuclease, PSP-type
748	 48.40	0	952004..952222	-	72	110667724	gvpM	HQ1770A	-	gas-vesicle operon protein gvpM
749	 46.48	0	952262..953242	-	326	110667725	gvpL	HQ1771A	-	gas-vesicle operon protein gvpL
750	 44.44	-1	953363..953767	-	134	110667726	gvpK	HQ1772A	-	gas-vesicle operon protein gvpK
751	 49.44	0	953770..954216	-	148	110667727	gvpJ	HQ1773A	-	gas-vesicle operon protein gvpJ
752	 48.02	0	954206..954559	-	117	110667728	gvpI	HQ1774A	-	gas-vesicle operon protein gvpI
753	 41.59	-1	954683..955348	-	221	110667729	gvpH	HQ1775A	-	gas-vesicle operon protein gvpH
754	 35.32	-2	955348..955599	-	83	110667730	gvpG	HQ1776A	-	gas-vesicle operon protein gvpG
755	 43.01	-1	955603..956253	-	216	110667731	gvpF	HQ1777A	-	gas-vesicle operon protein gvpF
756	 45.65	0	956632..957459	-	275	110667732	parA	HQ1778A	-	ParA domain-containing protein
757	 41.62	-1	959044..959610	-	188	110667733	gvpO	HQ1779A	-	gas-vesicle operon protein gvpO
758	 46.80	0	959635..960711	-	358	110667734	gvpN	HQ1780A	-	gas-vesicle operon protein gvpN
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.