IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.79   STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
571	 50.15	0	721488..722498	+	336	110667547	-	HQ1588A	-	hypothetical protein
572	 47.69	0	722522..722953	-	143	110667548	-	HQ1589A	-	hypothetical protein
573	 48.57	0	722950..724104	-	384	110667549	acaB	HQ1590A	-	acetyl-CoA C-acyltransferase
574	 51.25	0	724300..724779	+	159	110667550	-	HQ1591A	-	hypothetical protein
575	 50.00	0	725939..727042	-	367	110667551	trxB	HQ1592A	-	thioredoxin reductase (NADPH)
576	 54.25	+1	727590..727742	-	50	110667552	-	HQ1593A	-	hypothetical protein
577	 48.11	0	727824..729386	-	520	110667553	-	HQ1594A	-	hypothetical protein
578	 49.44	0	729450..730604	-	384	110667554	lepW	HQ1595A	-	signal peptidase I (SPase I) (leader peptidase I)
579	 47.04	0	730971..732539	-	522	110667555	-	HQ1596A	-	hemagglutinin like cellsurface protein
580	 54.44	+1	733907..734536	-	209	110667556	-	HQ1597A	-	hypothetical protein
581	 54.49	+1	734654..735901	-	415	110667557	-	HQ1598A	-	hypothetical protein
582	 43.59	-1	737113..737697	+	194	110667558	-	HQ1599A	-	hypothetical protein
583	 47.08	0	737694..738173	+	159	110667559	-	HQ1600A	-	hypothetical protein
584	 49.40	0	738358..739029	-	223	110667560	-	HQ1601A	-	S-adenosylmethionine-dependent methyltransferase
585	 46.38	0	739477..739821	+	114	110667561	-	HQ1602A	-	hypothetical protein
586	 51.98	0	739870..740652	+	260	110667562	dph5	HQ1603A	-	diphthine synthase
587	 49.68	0	740745..741668	-	307	110667563	-	HQ1604A	-	hypothetical protein
588	 49.16	0	741738..742508	-	256	110667564	glo	HQ1605A	-	lyase/ dioxygenase ( lactoylglutathione lyase, aromatic compounds dioxygenase)
589	 48.26	0	742771..743259	-	162	110667565	-	HQ1606A	-	hypothetical protein
590	 49.33	0	743298..744410	-	370	110667566	drg	HQ1607A	-	GTP-binding protein
591	 49.25	0	744530..744730	+	66	110667567	-	HQ1608A	-	hypothetical protein
592	 51.09	0	745300..745665	+	121	110667568	-	HQ1609A	-	cox cluster protein
593	 45.77	0	745826..746227	+	133	110667569	-	HQ1610A	-	cox cluster protein
594	 47.09	0	746434..748338	+	634	110667570	coxA	HQ1611A	-	cytochrome-c-like terminal oxidase, subunit I
595	 45.52	0	749083..749517	+	144	110667571	-	HQ1612A	-	cox cluster protein
596	 47.41	0	749632..750036	+	134	110667572	usp	HQ1613A	-	homolog to stress response protein
597	 46.72	0	750271..751032	-	253	110667573	trxA	HQ1614A	-	thioredoxin
598	 48.95	0	751095..751907	-	270	110667574	livF	HQ1615A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
599	 47.74	0	751904..752743	-	279	110667575	livG	HQ1616A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein I
600	 48.40	0	752740..753894	-	384	110667576	livM	HQ1617A	-	ABC-type branched-chain amino acid transport system, permease protein II
601	 47.41	0	753891..754892	-	333	110667577	livH	HQ1618A	-	ABC-type branched-chain amino acid transport system, permease protein I
602	 50.75	0	755021..756421	-	466	110667578	livJ	HQ1619A	-	ABC-type branched-chain amino acid transport systems, substrate-binding protein
603	 49.14	0	756651..757403	+	250	110667579	-	HQ1620A	-	protein N-acetyltransferase-like protein
604	 47.17	0	758303..758779	+	158	110667580	-	HQ1621A	-	hypothetical protein
605	 47.81	0	759041..759793	+	250	110667581	dsbG	HQ1622A	-	protein-disulfide isomerase
606	 47.06	0	759796..760407	+	203	110667582	-	HQ1623A	-	hypothetical protein
607	 46.97	0	760876..761865	-	329	110667583	-	HQ1624A	-	methyltransferase
608	 51.44	0	762151..763260	-	369	110667584	tfbA	HQ1625A	-	transcription initiation factor TFB
609	 47.18	0	763505..764869	-	454	110667585	btuD	HQ1626A	-	corrinoid ABC transporter ATPase
610	 49.13	0	764866..765903	-	345	110667586	btuC	HQ1627A	-	corrinoid ABC transporter permease
611	 47.80	0	765974..767266	+	430	110667587	hemT	HQ1628A	-	ABC-type cobalamin/Iron(III)-siderophore transport systems, substrate-binding protein
612	 47.65	0	768031..768498	+	155	110667588	trxA	HQ1629A	-	thioredoxin
613	 44.87	-1	768704..769327	+	207	110667589	-	HQ1630A	-	hypothetical protein
614	 48.06	0	769353..771443	-	696	110667590	mer3	HQ1631A	-	ATP-dependent DNA helicase
615	 48.22	0	771538..772686	-	382	110667591	aspC	HQ1632A	-	aspartate aminotransferase
616	 49.06	0	772683..773159	-	158	110667592	ribE	HQ1633A	-	riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synthase)
617	 49.01	0	773348..775216	+	622	110667593	-	HQ1634A	-	purK operon protein / membrane-bound mannosyltransferase
618	 48.92	0	775312..776517	+	401	110667594	purK	HQ1635A	-	phosphoribosylaminoimidazole carboxylase carbon dioxide-fixation chain
619	 47.95	0	776521..777177	+	218	110667595	purE	HQ1636A	-	phosphoribosylaminoimidazole carboxylase catalytic chain
620	 48.31	0	777382..777795	+	137	110667596	nuoA	HQ1637A	-	NADH dehydrogenase, subunit A (ubiquinone)
621	 48.94	0	777792..778496	+	234	110667597	nuoB	HQ1638A	-	NADH dehydrogenase, subunit B (ubiquinone)
622	 48.45	0	778493..780172	+	559	110667598	nuoCD	HQ1639A	-	NADH dehydrogenase, subunit Cd (ubiquinone)
623	 47.08	0	780172..781233	+	353	110667599	nuoH	HQ1640A	-	NADH dehydrogenase, subunit H (ubiquinone)
624	 44.59	-1	781230..781691	+	153	110667600	nuoI	HQ1641A	-	NADH dehydrogenase-like complex, subunit I
625	 47.13	0	782685..782945	+	86	110667601	nuoJ	HQ1643A	-	NADH dehydrogenase subunit J
626	 45.83	0	782942..783301	+	119	110667602	nuoJ2	HQ1644A	-	NADH dehydrogenase-like complex, subunit J2
627	 42.90	-1	783301..783603	+	100	110667603	nuoK	HQ1645A	-	NADH dehydrogenase, subunit K (ubiquinone)
628	 47.51	0	783605..785629	+	674	110667604	nuoL	HQ1646A	-	NADH dehydrogenase, subunit L (ubiquinone)
629	 46.37	0	785626..787152	+	508	110667605	nuoM	HQ1647A	-	NADH dehydrogenase, subunit M (ubiquinone)
630	 48.16	0	787152..788696	+	514	110667606	nuoN	HQ1648A	-	NADH dehydrogenase, subunit N (ubiquinone)
631	 46.84	0	789236..790708	+	490	110667607	-	HQ1649A	-	phosphoesterase-like protein
632	 47.51	0	791083..791865	+	260	110667608	-	HQ1650A	-	CBS domain-containing protein
633	 44.91	-1	791918..792202	-	94	110667609	-	HQ1651A	-	hypothetical protein
634	 47.94	0	792316..793383	-	355	110667610	trxB	HQ1652A	-	thioredoxin reductase (NADPH)
635	 48.26	0	793590..793877	+	95	110667611	-	HQ1653A	-	hypothetical protein
636	 46.18	0	794034..795527	-	497	110667612	cysS	HQ1654A	-	cysteine--tRNA ligase
637	 46.14	0	795555..796085	-	176	110667613	-	HQ1655A	-	hypothetical protein
638	 48.86	0	796513..797388	+	291	110667614	cbiX	HQ1656A	-	hypothetical protein
639	 47.50	0	798687..799286	-	199	110667615	-	HQ1658A	-	hypothetical protein
640	 45.70	0	799417..799602	-	61	110667616	-	HQ1659A	-	hypothetical protein
641	 50.00	0	799700..801031	-	443	110667617	purA	HQ1660A	-	adenylosuccinate synthetase
642	 48.66	0	801227..802831	-	534	110667618	purNH	HQ1661A	-	phosphoribosylglycinamide formyltransferase/ phosphoribosylaminoimidazolecarboxamide formyltransferase
643	 46.04	0	803232..804656	+	474	110667619	purB	HQ1662A	-	adenylosuccinate lyase
644	 47.50	0	804794..805873	+	359	110667620	gdh	HQ1663A	-	glucose 1-dehydrogenase
645	 45.05	0	805860..806525	+	221	110667621	pyrE	HQ1664A	-	orotate phosphoribosyltransferase
646	 48.85	0	806650..806997	+	115	110667622	-	HQ1665A	-	glutaredoxin-like protein
647	 47.37	0	807158..807727	+	189	110667623	-	HQ1666A	-	hypothetical protein
648	 49.53	0	807945..809327	+	460	110667624	gckA	HQ1667A	-	hydroxypyruvate reductase; glycerate kinase
649	 45.06	0	809355..810326	+	323	110667625	cysD	HQ1668A	-	sulfate adenylyltransferase, small subunit
650	 48.27	0	811402..812151	+	249	110667626	-	HQ1669A	-	hypothetical protein
651	 43.30	-1	812169..813131	-	320	110667627	graD	HQ1670A	-	sugar nucleotidyltransferase ( glucose-1-phosphate thymidylyltransferase)
652	 45.80	0	813235..813651	+	138	110667628	-	HQ1671A	-	hypothetical protein
653	 44.62	-1	813661..814227	-	188	110667629	apt	HQ1672A	-	adenine phosphoribosyltransferase
654	 44.06	-1	814484..814912	-	142	110667630	-	HQ1673A	-	hypothetical protein
655	 48.36	0	815122..816312	+	396	110667631	phaE	HQ1674A	-	putative monovalent cation/H+ antiporter subunit E
656	 46.18	0	816312..816638	+	108	110667632	phaF	HQ1675A	-	putative monovalent cation/H+ antiporter subunit F
657	 48.35	0	816640..816972	+	110	110667633	phaG	HQ1676A	-	putative monovalent cation/H+ antiporter subunit G
658	 49.27	0	816969..817514	+	181	110667634	phaB1	HQ1677A	-	putative monovalent cation/H+ antiporter subunit B
659	 46.74	0	817511..818047	+	178	110667635	phaB2	HQ1678A	-	putative monovalent cation/H+ antiporter subunit B
660	 42.55	-1	818044..818412	+	122	110667636	phaC	HQ1679A	-	putative monovalent cation/H+ antiporter subunit C
661	 47.64	0	818405..819907	+	500	110667637	phaD	HQ1680A	-	putative monovalent cation/H+ antiporter subunit D
662	 47.21	0	819907..822003	+	698	110667638	phaA	HQ1681A	-	putative monovalent cation/H+ antiporter subunit D
663	 45.85	0	822000..823916	+	638	110667639	-	HQ1682A	-	putative monovalent cation/H+ antiporter subunit D
664	 49.65	0	824263..825420	-	385	110667640	dfp	HQ1683A	-	phosphopantothenoylcysteine decarboxylase/ phosphopantothenate--cysteine ligase
665	 49.17	0	825660..826202	+	180	110667641	-	HQ1684A	-	hypothetical protein
666	 48.88	0	826465..827802	+	445	110667642	trkA	HQ1685A	-	potassium transporter peripheral membrane component
667	 47.98	0	827966..829570	+	534	110667643	trkH	HQ1686A	-	Trk-type potassium transport system, permease protein TrkH
668	 48.79	0	829629..831038	-	469	110667644	aatA	HQ1687A	-	aspartyl-tRNA(Asn) amidotransferase subunit A
669	 50.14	0	831041..831409	-	122	110667645	aatC	HQ1688A	-	aspartyl-tRNA(Asn) amidotransferase subunit C
670	 49.57	0	832265..833305	+	346	110667646	tfbA	HQ1689A	-	transcription initiation factor TFB
48.79	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.