IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
521	 48.79	0	660093..662072	+	659	110667497	acs	HQ1538A	-	acyl-CoA synthetase I
522	 48.17	0	662270..664669	-	799	110667498	-	HQ1539A	-	substrate efflux/proton antiporter
523	 47.04	0	664675..666330	-	551	110667499	-	HQ1540A	-	hypothetical protein
524	 50.76	0	666448..666711	-	87	110667500	-	HQ1541A	-	ArsR family transcriptional regulator
525	 46.47	0	666792..669257	-	821	110667501	-	HQ1542A	-	substrate efflux/proton antiporter
526	 46.93	0	669383..671029	-	548	110667502	-	HQ1543A	-	hypothetical protein
527	 47.45	0	671373..672590	+	405	110667503	pan2	HQ1544A	-	proteasome-activating nucleotidase
528	 44.40	-1	672656..673342	+	228	110667504	nthA	HQ1545A	-	endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
529	 45.00	0	673435..673914	-	159	110667505	-	HQ1546A	-	hypothetical protein
530	 49.03	0	674041..675066	+	341	110667506	-	HQ1547A	-	hypothetical protein
531	 51.30	0	675339..676028	+	229	110667507	hcpE	HQ1548A	-	halocyanin hcpE
532	 44.19	-1	676031..676417	+	128	110667508	-	HQ1549A	-	hypothetical protein
533	 45.35	0	676421..677227	+	268	110667509	petB	HQ1550A	-	menaquinol--cytochrome-c reductase (cytochrome bc complex) cytochrome b subunit
534	 48.47	0	677232..678050	+	272	110667510	petD	HQ1551A	-	menaquinol--cytochrome-c reductase (cytochrome bc complex) cytochrome b/c subunit
535	 44.04	-1	678497..678907	+	136	110667511	-	HQ1552A	-	hypothetical protein
536	 49.45	0	678900..679172	+	90	110667512	-	HQ1553A	-	hypothetical protein
537	 48.00	0	679558..680007	+	149	110667513	-	HQ1554A	-	hypothetical protein
538	 49.41	0	680539..681477	-	312	110667514	-	HQ1555A	-	hydrolase
539	 43.41	-1	681608..681865	-	85	110667515	-	HQ1556A	-	hypothetical protein
540	 50.09	0	681987..682517	+	176	110667516	hcpF	HQ1557A	-	halocyanin hcpF
541	 49.15	0	682679..683740	-	353	110667517	-	HQ1558A	-	hexosyltransferase; glycosyltransferase
542	 45.91	0	684008..684643	-	211	110667518	-	HQ1559A	-	hypothetical protein
543	 48.62	0	684879..685925	-	348	110667519	gldA	HQ1560A	-	glycerol-1-phosphate dehydrogenase (NAD(P))
544	 45.05	0	686129..686905	-	258	110667520	lysE	HQ1561A	-	LysE family L-lysine efflux protein
545	 46.39	0	687148..687867	-	239	110667521	-	HQ1562A	-	hypothetical protein
546	 47.57	0	687864..688811	-	315	110667522	sirR	HQ1563A	-	transcription regulator SirR
547	 50.86	0	688932..690146	-	404	110667523	thrC	HQ1564A	-	threonine synthase
548	 50.04	0	690369..691649	+	426	110667524	crtI	HQ1565A	-	phytoene dehydrogenase (phytoene desaturase)
549	 46.64	0	692330..693103	+	257	110667525	-	HQ1566A	-	short chain dehydrogenase/ reductase
550	 46.47	0	694772..695494	-	240	110667526	-	HQ1567A	-	metallophosphoesterase
551	 49.70	0	696594..697430	+	278	110667527	-	HQ1568A	-	transcription regulator
552	 47.84	0	697576..698223	-	215	110667528	dnaJ	HQ1569A	-	chaperone protein DnaJ
553	 48.69	0	698369..700726	+	785	110667529	ppsA1	HQ1570A	-	phosphoenolpyruvate synthase
554	 46.07	0	701028..701600	+	190	110667530	-	HQ1571A	-	hypothetical protein
555	 47.98	0	701718..703943	+	741	110667531	metG	HQ1572A	-	methionyl-tRNA synthetase
556	 50.14	0	704009..705769	+	586	110667532	pykA	HQ1573A	-	pyruvate kinase
557	 47.19	0	706149..706415	+	88	110667533	-	HQ1574A	-	hypothetical protein
558	 51.55	0	706591..707298	+	235	110667534	-	HQ1575A	-	hypothetical protein
559	 46.72	0	707459..708145	-	228	110667535	-	HQ1576A	-	hypothetical protein
560	 48.82	0	708147..709586	-	479	110667536	ctaB	HQ1577A	-	protoheme IX farnesyltransferase
561	 47.45	0	709696..710439	+	247	110667537	coxB	HQ1578A	-	cytochrome-c-like terminal oxidase, subunit II
562	 47.04	0	710461..711000	-	179	110667538	taqD	HQ1579A	-	glycerol-3-phosphate cytidyltransferase-like protein
563	 49.85	0	710997..711668	-	223	110667539	-	HQ1580A	-	hypothetical protein
564	 48.84	0	711852..713786	+	644	110667540	-	HQ1581A	-	RecJ like exonuclease
565	 48.16	0	714024..714731	-	235	110667541	-	HQ1582A	-	nitroreductase family protein
566	 48.82	0	715829..717604	-	591	110667542	-	HQ1583A	-	phospholipase D
567	 49.70	0	717918..719249	-	443	110667543	-	HQ1584A	-	homolog to phycocyanobilin lyase subunit
568	 50.22	0	719305..720222	-	305	110667544	fhuD	HQ1585A	-	ABC-type Fe3+-hydroxamate transport system,substrate-binding protein
569	 50.27	0	720356..720904	+	182	110667545	dpsA	HQ1586A	-	DNA-binding protein
570	 50.27	0	721065..721247	-	60	110667546	-	HQ1587A	-	hypothetical protein
571	 50.15	0	721488..722498	+	336	110667547	-	HQ1588A	-	hypothetical protein
572	 47.69	0	722522..722953	-	143	110667548	-	HQ1589A	-	hypothetical protein
573	 48.57	0	722950..724104	-	384	110667549	acaB	HQ1590A	-	acetyl-CoA C-acyltransferase
574	 51.25	0	724300..724779	+	159	110667550	-	HQ1591A	-	hypothetical protein
575	 50.00	0	725939..727042	-	367	110667551	trxB	HQ1592A	-	thioredoxin reductase (NADPH)
576	 54.25	+1	727590..727742	-	50	110667552	-	HQ1593A	-	hypothetical protein
577	 48.11	0	727824..729386	-	520	110667553	-	HQ1594A	-	hypothetical protein
578	 49.44	0	729450..730604	-	384	110667554	lepW	HQ1595A	-	signal peptidase I (SPase I) (leader peptidase I)
579	 47.04	0	730971..732539	-	522	110667555	-	HQ1596A	-	hemagglutinin like cellsurface protein
580	 54.44	+1	733907..734536	-	209	110667556	-	HQ1597A	-	hypothetical protein
581	 54.49	+1	734654..735901	-	415	110667557	-	HQ1598A	-	hypothetical protein
582	 43.59	-1	737113..737697	+	194	110667558	-	HQ1599A	-	hypothetical protein
583	 47.08	0	737694..738173	+	159	110667559	-	HQ1600A	-	hypothetical protein
584	 49.40	0	738358..739029	-	223	110667560	-	HQ1601A	-	S-adenosylmethionine-dependent methyltransferase
585	 46.38	0	739477..739821	+	114	110667561	-	HQ1602A	-	hypothetical protein
586	 51.98	0	739870..740652	+	260	110667562	dph5	HQ1603A	-	diphthine synthase
587	 49.68	0	740745..741668	-	307	110667563	-	HQ1604A	-	hypothetical protein
588	 49.16	0	741738..742508	-	256	110667564	glo	HQ1605A	-	lyase/ dioxygenase ( lactoylglutathione lyase, aromatic compounds dioxygenase)
589	 48.26	0	742771..743259	-	162	110667565	-	HQ1606A	-	hypothetical protein
590	 49.33	0	743298..744410	-	370	110667566	drg	HQ1607A	-	GTP-binding protein
591	 49.25	0	744530..744730	+	66	110667567	-	HQ1608A	-	hypothetical protein
592	 51.09	0	745300..745665	+	121	110667568	-	HQ1609A	-	cox cluster protein
593	 45.77	0	745826..746227	+	133	110667569	-	HQ1610A	-	cox cluster protein
594	 47.09	0	746434..748338	+	634	110667570	coxA	HQ1611A	-	cytochrome-c-like terminal oxidase, subunit I
595	 45.52	0	749083..749517	+	144	110667571	-	HQ1612A	-	cox cluster protein
596	 47.41	0	749632..750036	+	134	110667572	usp	HQ1613A	-	homolog to stress response protein
597	 46.72	0	750271..751032	-	253	110667573	trxA	HQ1614A	-	thioredoxin
598	 48.95	0	751095..751907	-	270	110667574	livF	HQ1615A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
599	 47.74	0	751904..752743	-	279	110667575	livG	HQ1616A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein I
600	 48.40	0	752740..753894	-	384	110667576	livM	HQ1617A	-	ABC-type branched-chain amino acid transport system, permease protein II
601	 47.41	0	753891..754892	-	333	110667577	livH	HQ1618A	-	ABC-type branched-chain amino acid transport system, permease protein I
602	 50.75	0	755021..756421	-	466	110667578	livJ	HQ1619A	-	ABC-type branched-chain amino acid transport systems, substrate-binding protein
603	 49.14	0	756651..757403	+	250	110667579	-	HQ1620A	-	protein N-acetyltransferase-like protein
604	 47.17	0	758303..758779	+	158	110667580	-	HQ1621A	-	hypothetical protein
605	 47.81	0	759041..759793	+	250	110667581	dsbG	HQ1622A	-	protein-disulfide isomerase
606	 47.06	0	759796..760407	+	203	110667582	-	HQ1623A	-	hypothetical protein
607	 46.97	0	760876..761865	-	329	110667583	-	HQ1624A	-	methyltransferase
608	 51.44	0	762151..763260	-	369	110667584	tfbA	HQ1625A	-	transcription initiation factor TFB
609	 47.18	0	763505..764869	-	454	110667585	btuD	HQ1626A	-	corrinoid ABC transporter ATPase
610	 49.13	0	764866..765903	-	345	110667586	btuC	HQ1627A	-	corrinoid ABC transporter permease
611	 47.80	0	765974..767266	+	430	110667587	hemT	HQ1628A	-	ABC-type cobalamin/Iron(III)-siderophore transport systems, substrate-binding protein
612	 47.65	0	768031..768498	+	155	110667588	trxA	HQ1629A	-	thioredoxin
613	 44.87	-1	768704..769327	+	207	110667589	-	HQ1630A	-	hypothetical protein
614	 48.06	0	769353..771443	-	696	110667590	mer3	HQ1631A	-	ATP-dependent DNA helicase
615	 48.22	0	771538..772686	-	382	110667591	aspC	HQ1632A	-	aspartate aminotransferase
616	 49.06	0	772683..773159	-	158	110667592	ribE	HQ1633A	-	riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synthase)
617	 49.01	0	773348..775216	+	622	110667593	-	HQ1634A	-	purK operon protein / membrane-bound mannosyltransferase
618	 48.92	0	775312..776517	+	401	110667594	purK	HQ1635A	-	phosphoribosylaminoimidazole carboxylase carbon dioxide-fixation chain
619	 47.95	0	776521..777177	+	218	110667595	purE	HQ1636A	-	phosphoribosylaminoimidazole carboxylase catalytic chain
620	 48.31	0	777382..777795	+	137	110667596	nuoA	HQ1637A	-	NADH dehydrogenase, subunit A (ubiquinone)
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.