IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.79   STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
444	 46.74	0	565113..565388	-	91	110667420	-	HQ1459A	-	hypothetical protein
445	 48.39	0	565843..568638	-	931	110667421	mutS1	HQ1460A	-	DNA mismatch repair protein
446	 49.38	0	568952..569998	-	348	110667422	-	HQ1461A	-	short chain dehydrogenase/ reductase
447	 46.69	0	570467..571312	+	281	110667423	-	HQ1462A	-	succinylglutamate desuccinylase / aspartoacylase family protein
448	 47.32	0	571697..572497	+	266	110667424	-	HQ1463A	-	hypothetical protein
449	 51.00	0	572705..573910	+	401	110667425	purT	HQ1464A	-	phosphoribosylglycinamide formyltransferase 2; formate-dependent GAR transformylase
450	 46.49	0	574031..575725	-	564	110667426	suhB	HQ1465A	-	inositol-1(or 4)-monophosphatase/ fructose-1,6-bisphosphatase
451	 50.25	0	575978..576379	+	133	110667427	psp	HQ1466A	-	ribonuclease, PSP-type; translation intitiation inhibition protein
452	 49.47	0	577298..578530	-	410	110667428	narK	HQ1467A	-	nitrate/nitrite transporter
453	 51.73	0	578878..579801	-	307	110667429	pstB	HQ1468A	-	ABC-type phosphate transport system, ATP-binding protein
454	 56.03	+1	579794..581401	-	535	110667430	pstA	HQ1469A	-	ABC-type phosphate transport system, permease protein I
455	 53.07	+1	581401..582525	-	374	110667431	pstC	HQ1470A	-	ABC-type phosphate transport system, permease protein II
456	 54.31	+1	582584..583756	-	390	110667432	pstS	HQ1471A	-	ABC-type phosphate transport system, substrate binding protein
457	 56.74	+2	583887..584873	+	328	110667433	-	HQ1472A	-	halo transducer protein
458	 46.49	0	586735..587418	-	227	110667434	prt	HQ1473A	-	phosphoribosyltransferase
459	 47.91	0	587511..588587	-	358	110667435	rbsK	HQ1474A	-	ribokinase
460	 46.92	0	588832..589545	-	237	110667436	-	HQ1475A	-	hypothetical protein
461	 41.56	-1	589616..590077	-	153	110667437	-	HQ1476A	-	hypothetical protein
462	 49.02	0	590102..591535	-	477	110667438	dppF	HQ1477A	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase protein II
463	 48.25	0	591528..592667	-	379	110667439	dppD	HQ1478A	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase protein I
464	 48.69	0	592667..594229	-	520	110667440	dppC	HQ1479A	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components II
465	 45.97	0	594372..595463	-	363	110667441	dppB	HQ1480A	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease protein I
466	 46.53	0	595590..597446	-	618	110667442	dppA	HQ1481A	-	ABC-type dipeptide/oligopeptide/nickel transport systems, substrate-binding protein
467	 47.72	0	597591..598751	-	386	110667443	dppF	HQ1482A	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase protein II
468	 49.22	0	598748..599842	-	364	110667444	dppD	HQ1483A	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase protein I
469	 47.63	0	599842..600750	-	302	110667445	dppC	HQ1484A	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease protein II
470	 48.85	0	600751..601710	-	319	110667446	dppB	HQ1485A	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease protein I
471	 47.92	0	601711..603438	-	575	110667447	dppA	HQ1486A	-	ABC-type dipeptide/oligopeptide/nickel transport system, substrate binding protein
472	 49.96	0	604201..605511	+	436	110667448	oxlT	HQ1487A	-	oxalate/formate antiporter
473	 50.16	0	605716..607314	-	532	110667449	ggt	HQ1488A	-	gamma-glutamyltransferase
474	 49.13	0	607691..609640	-	649	110667450	dpg	HQ1489A	-	dolichyl-phosphate beta-glucosyltransferase
475	 45.28	0	610294..610611	+	105	110667451	-	HQ1490A	-	hypothetical protein
476	 47.83	0	610641..611309	-	222	110667452	-	HQ1491A	-	hypothetical protein
477	 48.72	0	611488..612663	-	391	110667453	-	HQ1492A	-	stomatin-like protein
478	 48.20	0	612860..613888	+	342	110667454	abcA	HQ1493A	-	ABC-type transport system ATP-binding protein
479	 47.11	0	613885..614646	+	253	110667455	abcP	HQ1494A	-	ABC-type transport system permease protein
480	 48.44	0	614744..615418	+	224	110667456	eda	HQ1495A	-	KHG/KDPG aldolase (4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase)
481	 47.88	0	615652..617541	-	629	110667457	-	HQ1496A	-	hypothetical protein
482	 50.43	0	617544..618011	-	155	110667458	-	HQ1497A	-	hypothetical protein
483	 44.82	-1	618126..619109	-	327	110667459	-	HQ1498A	-	hypothetical protein
484	 46.58	0	619288..619725	-	145	110667460	-	HQ1499A	-	hypothetical protein
485	 46.42	0	619940..620734	-	264	110667461	-	HQ1500A	-	hypothetical protein
486	 46.74	0	621113..621634	+	173	110667462	-	HQ1501A	-	hypothetical protein
487	 50.22	0	621893..622117	+	74	110667463	-	HQ1502A	-	hypothetical protein
488	 49.29	0	622542..622823	+	93	110667464	srp19	HQ1503A	-	signal recognition particle 19K protein
489	 45.30	0	622831..623064	+	77	110667465	gar1	HQ1504A	-	H/ACA RNA-protein complex component Gar1
490	 45.59	0	623141..624160	+	339	110667466	-	HQ1505A	-	hypothetical protein
491	 46.39	0	624724..625221	-	165	110667467	-	HQ1506A	-	hypothetical protein
492	 48.05	0	625894..626817	+	307	110667468	dapA	HQ1507A	-	dihydrodipicolinate synthase
493	 48.05	0	626826..627749	+	307	110667469	dapB	HQ1508A	-	dihydrodipicolinate reductase
494	 48.29	0	627749..628597	+	282	110667470	dapD	HQ1509A	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
495	 48.89	0	628594..629988	+	464	110667471	lysA	HQ1510A	-	diaminopimelate decarboxylase
496	 48.44	0	629985..630977	+	330	110667472	dapF	HQ1511A	-	diaminopimelate epimerase (DAP epimerase)
497	 50.91	0	631051..632262	+	403	110667473	dapE	HQ1512A	-	succinyl-diaminopimelate desuccinylase
498	 47.65	0	632376..633227	+	283	110667474	rnp3	HQ1513A	-	ribonuclease P protein component 3
499	 44.66	-1	633211..633819	+	202	110667475	-	HQ1514A	-	S-adenosylmethionine-dependent methyltransferase-like protein
500	 49.44	0	633910..634443	+	177	110667476	rnp2	HQ1515A	-	ribonuclease P protein component 2
501	 48.74	0	634448..635200	+	250	110667477	psmA1	HQ1516A	-	proteasome subunit alpha
502	 44.73	-1	635561..635911	-	116	110667478	-	HQ1517A	-	transcription regulator / transcriptional repressor CinR
503	 45.58	0	636387..637235	-	282	110667479	-	HQ1518A	-	hypothetical protein
504	 43.50	-1	637939..638184	+	81	110667480	-	HQ1519A	-	hypothetical protein
505	 47.44	0	638311..639699	-	462	110667481	-	HQ1520A	-	electron-transferring-flavoprotein dehydrogenase
506	 52.03	0	640873..641904	-	343	110667482	pmm3	HQ1522A	-	phosphohexomutase 3 (phosphoglucomutase); phosphomannomutase)
507	 49.29	0	642053..642334	+	93	110667483	acyP	HQ1523A	-	acylphosphatase
508	 45.03	0	642614..643066	-	150	110667484	-	HQ1524A	-	hypothetical protein
509	 48.62	0	643155..644129	+	324	110667485	mvaD	HQ1525A	-	diphosphomevalonate decarboxylase
510	 49.92	0	644167..645414	+	415	110667486	ndh	HQ1526A	-	NADH dehydrogenase
511	 49.77	0	645541..645984	+	147	110667487	mgsA	HQ1527A	-	methylglyoxal synthase
512	 57.36	+2	646207..646539	+	110	110667488	-	HQ1528A	-	hypothetical protein
513	 46.42	0	646855..647343	-	162	110667489	-	HQ1529A	-	hypothetical protein
514	 44.81	-1	648642..649565	+	307	110667490	-	HQ1530A	-	hypothetical protein
515	 47.03	0	649914..651023	+	369	110667491	-	HQ1531A	-	hypothetical protein
516	 46.04	0	653262..654095	-	277	110667492	oxr	HQ1533A	-	aldo/keto reductase family oxidoreductase
517	 47.22	0	654623..655990	-	455	110667493	-	HQ1534A	-	electron-transferring-flavoprotein dehydrogenase
518	 45.72	0	656239..657102	-	287	110667494	korB	HQ1535A	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
519	 50.31	0	657099..658895	-	598	110667495	korA	HQ1536A	-	oxoglutarate--ferredoxin oxidoreductase, alpha subunit
520	 48.53	0	659150..659827	+	225	110667496	-	HQ1537A	-	electron transfer protein
521	 48.79	0	660093..662072	+	659	110667497	acs	HQ1538A	-	acyl-CoA synthetase I
522	 48.17	0	662270..664669	-	799	110667498	-	HQ1539A	-	substrate efflux/proton antiporter
523	 47.04	0	664675..666330	-	551	110667499	-	HQ1540A	-	hypothetical protein
524	 50.76	0	666448..666711	-	87	110667500	-	HQ1541A	-	ArsR family transcriptional regulator
525	 46.47	0	666792..669257	-	821	110667501	-	HQ1542A	-	substrate efflux/proton antiporter
526	 46.93	0	669383..671029	-	548	110667502	-	HQ1543A	-	hypothetical protein
527	 47.45	0	671373..672590	+	405	110667503	pan2	HQ1544A	-	proteasome-activating nucleotidase
528	 44.40	-1	672656..673342	+	228	110667504	nthA	HQ1545A	-	endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
529	 45.00	0	673435..673914	-	159	110667505	-	HQ1546A	-	hypothetical protein
530	 49.03	0	674041..675066	+	341	110667506	-	HQ1547A	-	hypothetical protein
531	 51.30	0	675339..676028	+	229	110667507	hcpE	HQ1548A	-	halocyanin hcpE
532	 44.19	-1	676031..676417	+	128	110667508	-	HQ1549A	-	hypothetical protein
533	 45.35	0	676421..677227	+	268	110667509	petB	HQ1550A	-	menaquinol--cytochrome-c reductase (cytochrome bc complex) cytochrome b subunit
534	 48.47	0	677232..678050	+	272	110667510	petD	HQ1551A	-	menaquinol--cytochrome-c reductase (cytochrome bc complex) cytochrome b/c subunit
535	 44.04	-1	678497..678907	+	136	110667511	-	HQ1552A	-	hypothetical protein
536	 49.45	0	678900..679172	+	90	110667512	-	HQ1553A	-	hypothetical protein
537	 48.00	0	679558..680007	+	149	110667513	-	HQ1554A	-	hypothetical protein
538	 49.41	0	680539..681477	-	312	110667514	-	HQ1555A	-	hydrolase
539	 43.41	-1	681608..681865	-	85	110667515	-	HQ1556A	-	hypothetical protein
540	 50.09	0	681987..682517	+	176	110667516	hcpF	HQ1557A	-	halocyanin hcpF
541	 49.15	0	682679..683740	-	353	110667517	-	HQ1558A	-	hexosyltransferase; glycosyltransferase
542	 45.91	0	684008..684643	-	211	110667518	-	HQ1559A	-	hypothetical protein
543	 48.62	0	684879..685925	-	348	110667519	gldA	HQ1560A	-	glycerol-1-phosphate dehydrogenase (NAD(P))
48.79	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.