IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
400	 48.33	0	513546..513725	+	59	110667376	-	HQ1414A	-	transcription regulator
401	 50.37	0	513730..514932	+	400	110667377	ftsZ	HQ1415A	-	cell division protein FtsZ
402	 50.06	0	515131..515943	-	270	110667378	-	HQ1416A	-	S-adenosylmethionine-dependent methyltransferase
403	 45.40	0	515951..516787	-	278	110667379	nfo	HQ1417A	-	endonuclease IV
404	 49.49	0	516933..518294	-	453	110667380	aldH	HQ1418A	-	aldehyde dehydrogenase (succinate-semialdehyde dehydrogenase homolog)
405	 56.08	+1	519309..520460	+	383	110667381	kef	HQ1419A	-	Kef-type K+ transporter NAD-binding component
406	 46.30	0	521230..522147	+	305	110667382	pkn	HQ1420A	-	RIO-like serine/threonine protein kinase
407	 47.58	0	523070..524122	-	350	110667383	cysA	HQ1421A	-	ABC transporter ATP-binding protein
408	 48.77	0	524119..524934	-	271	110667384	modB	HQ1422A	-	ABC transporter permease
409	 46.65	0	525089..526177	-	362	110667385	modA	HQ1423A	-	ABC transporter substrate-binding protein
410	 49.92	0	526579..527169	+	196	110667386	rpl15R	HQ1424A	-	50S ribosomal protein L15e
411	 46.06	0	527238..528125	+	295	110667387	moeB	HQ1425A	-	molybdenum cofactor biosynthesis protein MoeB
412	 47.44	0	528292..529248	-	318	110667388	menA	HQ1426A	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
413	 48.45	0	529272..529787	-	171	110667389	-	HQ1427A	-	hypothetical protein
414	 42.34	-1	530887..531108	+	73	110667390	-	HQ1428A	-	hypothetical protein
415	 42.86	-1	531123..531458	-	111	110667391	-	HQ1429A	-	hypothetical protein
416	 50.48	0	531620..532039	-	139	110667392	-	HQ1430A	-	CBS domain-containing protein
417	 44.59	-1	532392..533501	+	369	110667393	potA	HQ1431A	-	spermidine/putrescine ABC transporter ATPase
418	 41.19	-1	533498..534439	+	313	110667394	potB	HQ1432A	-	spermidine/putrescine ABC transporter permease
419	 43.54	-1	534436..535287	+	283	110667395	potC	HQ1433A	-	spermidine/putrescine ABC transporter permease
420	 46.52	0	535334..536455	+	373	110667396	potD	HQ1434A	-	spermidine/putrescine ABC transporter permease
421	 49.65	0	537725..539281	+	518	110667397	rpa	HQ1435A	-	replication factor A
422	 53.01	+1	539507..539938	+	143	110667398	hstA	HQ1436A	-	histone
423	 49.01	0	539943..540956	+	337	110667399	aup	HQ1437A	-	histone deacetylase
424	 48.43	0	541037..542434	-	465	110667400	cca	HQ1438A	-	tRNA CCA-pyrophosphorylase
425	 46.67	0	543445..543999	-	184	110667401	-	HQ1439A	-	membrane-bound metal-dependent hydrolase
426	 47.19	0	544876..545106	+	76	110667402	-	HQ1440A	-	hypothetical protein
427	 44.57	-1	545235..545501	+	88	110667403	-	HQ1441A	-	hypothetical protein
428	 48.54	0	546031..547056	+	341	110667404	Imp	HQ1442A	-	TRAP-type transport system,periplasmic protein
429	 41.01	-2	547352..547846	+	164	110667405	-	HQ1443A	-	TRAP-type transport system protein
430	 46.33	0	547843..550551	+	902	110667406	-	HQ1444A	-	TRAP-type transport system, permease protein
431	 47.27	0	550701..552860	+	719	110667407	phr	HQ1445A	-	deoxyribodipyrimidine photolyase
432	 43.59	-1	552993..553148	+	51	110667408	-	HQ1446A	-	hypothetical protein
433	 49.41	0	553900..554322	-	140	110667409	-	HQ1448A	-	hypothetical protein
434	 49.55	0	554334..554888	-	184	110667410	adkA	HQ1449A	-	adenylate kinase
435	 43.64	-1	554901..555191	-	96	110667411	-	HQ1450A	-	hypothetical protein
436	 48.31	0	555911..557719	+	602	110667412	focA	HQ1451A	-	formate/nitrate transporter
437	 52.38	0	557832..558272	+	146	110667413	-	HQ1452A	-	hypothetical protein
438	 46.91	0	558279..559103	-	274	110667414	-	HQ1453A	-	hypothetical protein
439	 45.81	0	559305..559793	+	162	110667415	-	HQ1454A	-	hypothetical protein
440	 46.00	0	559871..560920	-	349	110667416	kdgK	HQ1455A	-	2-keto-3-deoxygluconate kinase
441	 46.70	0	560981..563299	-	772	110667417	mutL	HQ1456A	-	DNA mismatch repair protein MutL
442	 50.67	0	563296..563814	-	172	110667418	mutT	HQ1457A	-	mut/nudix family protein
443	 45.99	0	564232..565116	-	294	110667419	-	HQ1458A	-	hypothetical protein
444	 46.74	0	565113..565388	-	91	110667420	-	HQ1459A	-	hypothetical protein
445	 48.39	0	565843..568638	-	931	110667421	mutS1	HQ1460A	-	DNA mismatch repair protein
446	 49.38	0	568952..569998	-	348	110667422	-	HQ1461A	-	short chain dehydrogenase/ reductase
447	 46.69	0	570467..571312	+	281	110667423	-	HQ1462A	-	succinylglutamate desuccinylase / aspartoacylase family protein
448	 47.32	0	571697..572497	+	266	110667424	-	HQ1463A	-	hypothetical protein
449	 51.00	0	572705..573910	+	401	110667425	purT	HQ1464A	-	phosphoribosylglycinamide formyltransferase 2; formate-dependent GAR transformylase
450	 46.49	0	574031..575725	-	564	110667426	suhB	HQ1465A	-	inositol-1(or 4)-monophosphatase/ fructose-1,6-bisphosphatase
451	 50.25	0	575978..576379	+	133	110667427	psp	HQ1466A	-	ribonuclease, PSP-type; translation intitiation inhibition protein
452	 49.47	0	577298..578530	-	410	110667428	narK	HQ1467A	-	nitrate/nitrite transporter
453	 51.73	0	578878..579801	-	307	110667429	pstB	HQ1468A	-	ABC-type phosphate transport system, ATP-binding protein
454	 56.03	+1	579794..581401	-	535	110667430	pstA	HQ1469A	-	ABC-type phosphate transport system, permease protein I
455	 53.07	+1	581401..582525	-	374	110667431	pstC	HQ1470A	-	ABC-type phosphate transport system, permease protein II
456	 54.31	+1	582584..583756	-	390	110667432	pstS	HQ1471A	-	ABC-type phosphate transport system, substrate binding protein
457	 56.74	+2	583887..584873	+	328	110667433	-	HQ1472A	-	halo transducer protein
458	 46.49	0	586735..587418	-	227	110667434	prt	HQ1473A	-	phosphoribosyltransferase
459	 47.91	0	587511..588587	-	358	110667435	rbsK	HQ1474A	-	ribokinase
460	 46.92	0	588832..589545	-	237	110667436	-	HQ1475A	-	hypothetical protein
461	 41.56	-1	589616..590077	-	153	110667437	-	HQ1476A	-	hypothetical protein
462	 49.02	0	590102..591535	-	477	110667438	dppF	HQ1477A	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase protein II
463	 48.25	0	591528..592667	-	379	110667439	dppD	HQ1478A	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase protein I
464	 48.69	0	592667..594229	-	520	110667440	dppC	HQ1479A	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components II
465	 45.97	0	594372..595463	-	363	110667441	dppB	HQ1480A	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease protein I
466	 46.53	0	595590..597446	-	618	110667442	dppA	HQ1481A	-	ABC-type dipeptide/oligopeptide/nickel transport systems, substrate-binding protein
467	 47.72	0	597591..598751	-	386	110667443	dppF	HQ1482A	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase protein II
468	 49.22	0	598748..599842	-	364	110667444	dppD	HQ1483A	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase protein I
469	 47.63	0	599842..600750	-	302	110667445	dppC	HQ1484A	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease protein II
470	 48.85	0	600751..601710	-	319	110667446	dppB	HQ1485A	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease protein I
471	 47.92	0	601711..603438	-	575	110667447	dppA	HQ1486A	-	ABC-type dipeptide/oligopeptide/nickel transport system, substrate binding protein
472	 49.96	0	604201..605511	+	436	110667448	oxlT	HQ1487A	-	oxalate/formate antiporter
473	 50.16	0	605716..607314	-	532	110667449	ggt	HQ1488A	-	gamma-glutamyltransferase
474	 49.13	0	607691..609640	-	649	110667450	dpg	HQ1489A	-	dolichyl-phosphate beta-glucosyltransferase
475	 45.28	0	610294..610611	+	105	110667451	-	HQ1490A	-	hypothetical protein
476	 47.83	0	610641..611309	-	222	110667452	-	HQ1491A	-	hypothetical protein
477	 48.72	0	611488..612663	-	391	110667453	-	HQ1492A	-	stomatin-like protein
478	 48.20	0	612860..613888	+	342	110667454	abcA	HQ1493A	-	ABC-type transport system ATP-binding protein
479	 47.11	0	613885..614646	+	253	110667455	abcP	HQ1494A	-	ABC-type transport system permease protein
480	 48.44	0	614744..615418	+	224	110667456	eda	HQ1495A	-	KHG/KDPG aldolase (4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase)
481	 47.88	0	615652..617541	-	629	110667457	-	HQ1496A	-	hypothetical protein
482	 50.43	0	617544..618011	-	155	110667458	-	HQ1497A	-	hypothetical protein
483	 44.82	-1	618126..619109	-	327	110667459	-	HQ1498A	-	hypothetical protein
484	 46.58	0	619288..619725	-	145	110667460	-	HQ1499A	-	hypothetical protein
485	 46.42	0	619940..620734	-	264	110667461	-	HQ1500A	-	hypothetical protein
486	 46.74	0	621113..621634	+	173	110667462	-	HQ1501A	-	hypothetical protein
487	 50.22	0	621893..622117	+	74	110667463	-	HQ1502A	-	hypothetical protein
488	 49.29	0	622542..622823	+	93	110667464	srp19	HQ1503A	-	signal recognition particle 19K protein
489	 45.30	0	622831..623064	+	77	110667465	gar1	HQ1504A	-	H/ACA RNA-protein complex component Gar1
490	 45.59	0	623141..624160	+	339	110667466	-	HQ1505A	-	hypothetical protein
491	 46.39	0	624724..625221	-	165	110667467	-	HQ1506A	-	hypothetical protein
492	 48.05	0	625894..626817	+	307	110667468	dapA	HQ1507A	-	dihydrodipicolinate synthase
493	 48.05	0	626826..627749	+	307	110667469	dapB	HQ1508A	-	dihydrodipicolinate reductase
494	 48.29	0	627749..628597	+	282	110667470	dapD	HQ1509A	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
495	 48.89	0	628594..629988	+	464	110667471	lysA	HQ1510A	-	diaminopimelate decarboxylase
496	 48.44	0	629985..630977	+	330	110667472	dapF	HQ1511A	-	diaminopimelate epimerase (DAP epimerase)
497	 50.91	0	631051..632262	+	403	110667473	dapE	HQ1512A	-	succinyl-diaminopimelate desuccinylase
498	 47.65	0	632376..633227	+	283	110667474	rnp3	HQ1513A	-	ribonuclease P protein component 3
499	 44.66	-1	633211..633819	+	202	110667475	-	HQ1514A	-	S-adenosylmethionine-dependent methyltransferase-like protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.