IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
314	 44.00	-1	417121..417270	+	49	110667290	rpl40e	HQ1324A	-	50S ribosomal protein L40e
315	 63.80	+2	418409..419245	-	278	110667291	-	HQ1326A	-	hypothetical protein
316	 50.60	0	420180..420347	+	55	110667292	-	HQ1327A	-	hypothetical protein
317	 47.37	0	422427..424856	+	809	110667293	tadA	HQ1328A	-	type II/IV secretion system protein, ATP binding protein
318	 49.43	0	424856..426793	+	645	110667294	tadC	HQ1329A	-	type II secretion system, transmembrane protein TadC
319	 50.81	0	426793..427599	+	268	110667295	-	HQ1330A	-	hypothetical protein
320	 43.25	-1	427596..428402	+	268	110667296	-	HQ1331A	-	hypothetical protein
321	 51.09	0	428399..429085	+	228	110667297	-	HQ1332A	-	hypothetical protein
322	 46.01	0	429608..430183	+	191	110667298	-	HQ1334A	-	hypothetical protein
323	 50.49	0	430681..431910	+	409	110667299	tif2g	HQ1335A	-	translation initiation factor IF-2 subunit gamma
324	 46.03	0	432086..432715	+	209	110667300	-	HQ1336A	-	rpo operon protein
325	 49.40	0	432719..433303	+	194	110667301	rpoE1	HQ1337A	-	DNA-directed RNA polymerase subunit E'
326	 48.48	0	433304..433501	+	65	110667302	rpoE2	HQ1338A	-	DNA-directed RNA polymerase subunit E''
327	 50.27	0	433512..434072	+	186	110667303	-	HQ1339A	-	rpo operon protein
328	 42.14	-1	434504..434821	+	105	110667304	rps24e	HQ1340A	-	30S ribosomal protein S24e
329	 48.69	0	435032..436633	+	533	110667305	gcp	HQ1341A	-	O-sialoglycoprotein endopeptidase/protein kinase
330	 48.11	0	437337..437600	+	87	110667306	-	HQ1342A	-	hypothetical protein
331	 45.96	0	437637..438317	+	226	110667307	ham1	HQ1343A	-	nucleoside-triphosphatase
332	 50.13	0	438397..439158	-	253	110667308	-	HQ1344A	-	hypothetical protein
333	 47.73	0	439507..440166	-	219	110667309	trkA	HQ1345A	-	potassium transport system, NAD-binding protein
334	 47.96	0	440296..440958	-	220	110667310	csg	HQ1346A	-	cell surface glycoprotein precursor
335	 42.16	-1	441243..441446	-	67	110667311	-	HQ1347A	-	hypothetical protein
336	 47.73	0	441633..442778	-	381	110667312	ilvA	HQ1348A	-	threonine dehydratase
337	 46.97	0	443125..444261	-	378	110667313	citZ	HQ1349A	-	citrate (si)-synthase
338	 49.92	0	445191..446414	+	407	110667314	pchB	HQ1350A	-	potassium channel protein
339	 46.74	0	446441..446731	-	96	110667315	-	HQ1351A	-	hypothetical protein
340	 49.74	0	446876..447832	+	318	110667316	-	HQ1352A	-	hypothetical protein
341	 46.41	0	449441..449593	-	50	110667317	-	HQ1354A	-	hypothetical protein
342	 50.81	0	449749..450549	+	266	110667318	thrC	HQ1355A	-	threonine synthase
343	 54.15	+1	451087..452460	+	457	110667319	-	HQ1356A	-	IS1341-type transposase
344	 48.93	0	452564..453403	-	279	110667320	pimT	HQ1357A	-	protein-L-isoaspartate O-methyltransferase
345	 48.78	0	453494..454147	-	217	110667321	-	HQ1358A	-	hypothetical protein
346	 48.69	0	454465..455421	-	318	110667322	pepB	HQ1359A	-	aminopeptidase ( leucyl aminopeptidase, aminopeptidase T)
347	 48.04	0	455564..456637	+	357	110667323	gapB	HQ1360A	-	glyceraldehyde-3-phosphate dehydrogenase
348	 48.31	0	456865..457278	-	137	110667324	-	HQ1361A	-	hypothetical protein
349	 49.16	0	457594..457890	+	98	110667325	-	HQ1362A	-	hypothetical protein
350	 47.38	0	458045..459439	-	464	110667326	pepQ	HQ1363A	-	Xaa-Pro aminopeptidase
351	 48.84	0	459436..461292	-	618	110667327	uvrD	HQ1364A	-	DNA helicase II
352	 53.62	+1	461776..462258	+	160	110667328	-	HQ1366A	-	hypothetical protein
353	 46.92	0	463457..465046	-	529	110667329	cxp	HQ1367A	-	carboxypeptidase
354	 49.61	0	465527..466669	-	380	110667330	argE	HQ1368A	-	acetylornithine deacetylase
355	 48.06	0	466800..468707	+	635	110667331	-	HQ1369A	-	ATPase
356	 50.86	0	469155..469502	-	115	110667332	-	HQ1370A	-	ArsR family transcriptional regulator
357	 49.21	0	469624..469938	+	104	110667333	-	HQ1371A	-	hypothetical protein
358	 45.45	0	469943..471790	+	615	110667334	-	HQ1372A	-	putative ATPase RIL
359	 49.57	0	472088..472549	+	153	110667335	-	HQ1373A	-	stress response protein
360	 46.36	0	473342..473863	-	173	110667336	-	HQ1374A	-	archaemetzincin-like protein
361	 48.31	0	473903..474316	+	137	110667337	-	HQ1375A	-	hypothetical protein
362	 45.72	0	474453..475316	+	287	110667338	-	HQ1376A	-	hypothetical protein
363	 44.60	-1	475620..476258	-	212	110667339	-	HQ1377A	-	hydrolase ( hydroxyacylglutathione hydrolase)
364	 46.33	0	476662..476838	+	58	110667340	-	HQ1378A	-	hypothetical protein
365	 49.49	0	477012..477605	+	197	110667341	-	HQ1379A	-	hypothetical protein
366	 47.64	0	477681..478379	+	232	110667342	-	HQ1380A	-	uracil-DNA glycosylase-like protein
367	 46.71	0	478381..479382	-	333	110667343	phnE	HQ1381A	-	ABC-type phosphate/phosphonate/phosphite transport system, permease protein
368	 47.98	0	479379..480293	-	304	110667344	phnC	HQ1382A	-	ABC-type phosphate/phosphonate/phosphite transport system, ATP-binding protein
369	 47.97	0	480324..481307	-	327	110667345	phnD	HQ1383A	-	ABC-type phosphate/phosphonate/phosphite transport system, substrate-binding protein
370	 46.69	0	481417..482127	+	236	110667346	hisH	HQ1384A	-	imidazole glycerol phosphate synthase subunit HisH
371	 48.57	0	482167..482973	+	268	110667347	pheA	HQ1385A	-	prephenate dehydratase
372	 48.29	0	483287..484336	-	349	110667348	ocd	HQ1386A	-	ornithine cyclodeaminase
373	 49.31	0	484527..486203	-	558	110667349	thsB	HQ1387A	-	thermosome, beta subunit
374	 48.15	0	486394..486690	+	98	110667350	csp	HQ1388A	-	cold shock protein
375	 40.44	-2	486813..487220	+	135	110667351	-	HQ1389A	-	hypothetical protein
376	 48.04	0	487228..487941	+	237	110667352	-	HQ1390A	-	hypothetical protein
377	 50.09	0	488010..488540	+	176	110667353	rpl10e	HQ1391A	-	50S ribosomal protein L10e
378	 45.52	0	489831..490700	+	289	110667354	-	HQ1392A	-	homolog of lysine biosynthesis regulator/ribosomal protein S6 modification enzyme (glutaminyl transferase)
379	 45.45	0	490962..491324	-	120	110667355	hsp20	HQ1393A	-	hsp20 type chaperone
380	 45.82	0	491629..492717	+	362	110667356	gapB	HQ1394A	-	glyceraldehyde-3-phosphate dehydrogenase (NAD(P)) (phosphorylating)
381	 45.63	0	492823..494058	+	411	110667357	pgk	HQ1395A	-	phosphoglycerate kinase
382	 45.71	0	494213..494842	+	209	110667358	ribC	HQ1396A	-	riboflavin synthase subunit alpha
383	 45.57	0	495499..496503	-	334	110667359	-	HQ1397A	-	hypothetical protein
384	 49.41	0	496864..498381	+	505	110667360	-	HQ1398A	-	ribonuclease
385	 50.99	0	499223..499675	-	150	110667361	act	HQ1399A	-	acyl-CoA thioester hydrolase
386	 53.70	+1	499936..500097	-	53	110667362	-	HQ1400A	-	hypothetical protein
387	 49.67	0	500236..500541	+	101	110667363	-	HQ1401A	-	hypothetical protein
388	 48.07	0	501226..501951	-	241	110667364	-	HQ1402A	-	hypothetical protein
389	 50.13	0	501953..502726	-	257	110667365	minD	HQ1403A	-	cell division inhibitor MinD
390	 48.68	0	502805..504589	-	594	110667366	cbiP	HQ1404A	-	cobyric acid synthase
391	 46.45	0	504758..505489	-	243	110667367	cobO	HQ1405A	-	cob(I)alamin adenosyltransferase
392	 47.61	0	506233..507255	-	340	110667368	cbiZ	HQ1406A	-	adenosylcobinamide amidohydrolase
393	 50.57	0	507267..508322	-	351	110667369	cobD	HQ1407A	-	L-threonine-O-3-phosphate decarboxylase
394	 50.43	0	508510..509544	-	344	110667370	cobT	HQ1408A	-	hypothetical protein
395	 46.78	0	509535..510263	-	242	110667371	cobY	HQ1409A	-	GTP:adenosylcobinamide-phosphate guanylyltransferase
396	 50.07	0	510266..511030	-	254	110667372	cobS	HQ1410A	-	cobalamin (5'-phosphate) synthase
397	 48.10	0	511021..511941	-	306	110667373	cbiB	HQ1411A	-	cobalamine biosynthesis protein (adenosylcobinamide biosynthesis protein)
398	 48.61	0	512004..512651	-	215	110667374	-	HQ1412A	-	cobalamine operon protein; hydrolase
399	 46.74	0	512793..513344	+	183	110667375	-	HQ1413A	-	hypothetical protein
400	 48.33	0	513546..513725	+	59	110667376	-	HQ1414A	-	transcription regulator
401	 50.37	0	513730..514932	+	400	110667377	ftsZ	HQ1415A	-	cell division protein FtsZ
402	 50.06	0	515131..515943	-	270	110667378	-	HQ1416A	-	S-adenosylmethionine-dependent methyltransferase
403	 45.40	0	515951..516787	-	278	110667379	nfo	HQ1417A	-	endonuclease IV
404	 49.49	0	516933..518294	-	453	110667380	aldH	HQ1418A	-	aldehyde dehydrogenase (succinate-semialdehyde dehydrogenase homolog)
405	 56.08	+1	519309..520460	+	383	110667381	kef	HQ1419A	-	Kef-type K+ transporter NAD-binding component
406	 46.30	0	521230..522147	+	305	110667382	pkn	HQ1420A	-	RIO-like serine/threonine protein kinase
407	 47.58	0	523070..524122	-	350	110667383	cysA	HQ1421A	-	ABC transporter ATP-binding protein
408	 48.77	0	524119..524934	-	271	110667384	modB	HQ1422A	-	ABC transporter permease
409	 46.65	0	525089..526177	-	362	110667385	modA	HQ1423A	-	ABC transporter substrate-binding protein
410	 49.92	0	526579..527169	+	196	110667386	rpl15R	HQ1424A	-	50S ribosomal protein L15e
411	 46.06	0	527238..528125	+	295	110667387	moeB	HQ1425A	-	molybdenum cofactor biosynthesis protein MoeB
412	 47.44	0	528292..529248	-	318	110667388	menA	HQ1426A	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
413	 48.45	0	529272..529787	-	171	110667389	-	HQ1427A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.