IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
229	 50.63	0	323862..325127	-	421	110667205	arsA	HQ1236A	-	transport ATPase ( substrate arsenite)
230	 47.86	0	325208..326329	-	373	110667206	aspC	HQ1237A	-	PLP-dependent aminotransferase ( aspartate aminotransferase)
231	 49.90	0	326649..327167	+	172	110667207	cinA	HQ1238A	-	CinA-like domain-containing protein
232	 43.71	-1	327354..327941	+	195	110667208	-	HQ1239A	-	hypothetical protein
233	 46.47	0	328105..328911	-	268	110667209	-	HQ1240A	-	hypothetical protein
234	 48.12	0	329301..329753	-	150	110667210	nusG	HQ1241A	-	transcription antitermination protein NusG
235	 43.68	-1	329760..329933	-	57	110667211	secE	HQ1242A	-	preprotein translocase subunit SecE
236	 50.72	0	330405..331721	-	438	110667212	ftsZ	HQ1243A	-	cell division protein FtsZ
237	 48.63	0	331955..333529	-	524	110667213	-	HQ1244A	-	hypothetical protein
238	 48.23	0	333818..334636	+	272	110667214	aroE	HQ1245A	-	shikimate 5-dehydrogenase
239	 48.99	0	334956..335798	+	280	110667215	-	HQ1246A	-	hypothetical protein
240	 48.70	0	335795..336718	+	307	110667216	ilvE	HQ1247A	-	branched-chain amino acid aminotransferase
241	 45.69	0	336773..337201	+	142	110667217	-	HQ1248A	-	homolog to Rieske iron sulfur protein
242	 44.73	-1	337547..338020	-	157	110667218	-	HQ1249A	-	GtrA-like family protein, cell surface polysaccharide biosynthesis protein
243	 47.98	0	338023..339087	-	354	110667219	-	HQ1250A	-	glycosyl tranferase; dolichyl-phosphate beta-glucosyltransferase
244	 48.41	0	339376..341895	+	839	110667220	-	HQ1251A	-	hypothetical protein
245	 46.51	0	341900..342157	-	85	110667221	-	HQ1252A	-	hypothetical protein
246	 46.81	0	342278..342559	+	93	110667222	rpl44e	HQ1253A	-	50S ribosomal protein L44e
247	 47.81	0	342563..342790	+	75	110667223	rps27e	HQ1254A	-	30S ribosomal protein S27e
248	 46.69	0	342888..343688	+	266	110667224	tif2a	HQ1255A	-	translation initiation factor IF-2 subunit alpha
249	 45.36	0	343813..343995	+	60	110667225	-	HQ1256A	-	H/ACA RNA-protein complex component Nop10p
250	 48.62	0	344000..344758	+	252	110667226	-	HQ1257A	-	hypothetical protein
251	 48.43	0	345472..345948	+	158	110667227	-	HQ1258A	-	hypothetical protein
252	 47.90	0	346446..347399	-	317	110667228	phfZ	HQ1259A	-	phenazine biosynthesis protein
253	 46.93	0	347514..348278	+	254	110667229	prt	HQ1260A	-	phosphoribosyltransferase
254	 46.81	0	348291..349247	+	318	110667230	-	HQ1261A	-	transporter
255	 46.14	0	349950..350855	+	301	110667231	mtaP	HQ1262A	-	5'-methylthioadenosine phosphorylase MtaP
256	 47.94	0	350967..351911	-	314	110667232	-	HQ1263A	-	smc operon protein
257	 46.32	0	351904..355500	-	1198	110667233	smc	HQ1264A	-	chromosome partition protein
258	 47.22	0	355630..355953	-	107	110667234	-	HQ1265A	-	smc operon protein
259	 45.47	0	356333..357823	+	496	110667235	gatB	HQ1266A	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
260	 47.79	0	358124..360697	+	857	110667236	topA	HQ1267A	-	DNA topoisomerase I
261	 45.64	0	361003..361197	-	64	110667237	csp	HQ1268A	-	cold shock protein
262	 47.78	0	361607..362326	+	239	110667238	pcrB	HQ1269A	-	geranylgeranylglyceryl phosphate synthase-like protein
263	 47.13	0	362844..364148	+	434	110667239	aspC	HQ1270A	-	aspartyl-tRNA synthetase
264	 49.73	0	364149..365063	+	304	110667240	kin	HQ1271A	-	sugar kinase
265	 49.26	0	365924..366733	+	269	110667241	-	HQ1272A	-	hypothetical protein
266	 47.70	0	367414..368415	-	333	110667242	-	HQ1275A	-	glutathione S-transferase
267	 49.89	0	368587..369510	+	307	110667243	-	HQ1276A	-	ribulose-1,5-biphosphate synthetase
268	 47.20	0	369729..370673	-	314	110667244	-	HQ1277A	-	hypothetical protein
269	 47.83	0	370670..371290	-	206	110667245	dcd	HQ1278A	-	deoxycytidine triphosphate deaminase
270	 47.20	0	372020..372358	+	112	110667246	-	HQ1279A	-	peptidyl-tRNA hydrolase
271	 46.38	0	373020..374123	+	367	110667247	-	HQ1280A	-	signal-transducing histidine kinase/response regulator
272	 46.05	0	374402..375856	+	484	110667248	truD	HQ1281A	-	tRNA pseudouridine synthase D
273	 50.21	0	376496..377218	+	240	110667249	-	HQ1282A	-	hypothetical protein
274	 50.18	0	377461..377739	+	92	110667250	rpl37aR	HQ1283A	-	ribosomal protein L37a.eR
275	 45.93	0	377755..377889	+	44	110667251	rpoP	HQ1284A	-	DNA-directed RNA polymerase subunit P
276	 44.60	-1	378104..378520	+	138	110667252	-	HQ1285A	-	rpo operon protein
277	 51.03	0	378743..379132	+	129	110667253	pfdB	HQ1286A	-	prefoldin beta subunit
278	 48.07	0	379125..379409	+	94	110667254	-	HQ1287A	-	hypothetical protein
279	 47.90	0	379628..381535	-	635	110667255	-	HQ1288A	-	hypothetical protein
280	 50.27	0	381564..382118	-	184	110667256	guaAa	HQ1289A	-	GMP synthase subunit A
281	 48.79	0	382589..383248	-	219	110667257	-	HQ1290A	-	hypothetical protein
282	 44.72	-1	383599..383958	+	119	110667258	-	HQ1291A	-	hypothetical protein
283	 50.75	0	384154..385749	+	531	110667259	leuA	HQ1292A	-	(R)-citramalate synthase
284	 47.97	0	385877..386245	+	122	110667260	-	HQ1293A	-	hypothetical protein
285	 51.63	0	387006..387464	-	152	110667261	-	HQ1294A	-	hypothetical protein
286	 46.60	0	387564..388769	+	401	110667262	-	HQ1295A	-	ABC-type transport system, ATP-binding protein
287	 47.91	0	388766..389602	+	278	110667263	-	HQ1296A	-	ABC-type transport system, permease protein
288	 50.13	0	389711..390103	-	130	110667264	-	HQ1297A	-	hypothetical protein
289	 48.64	0	390242..391633	+	463	110667265	phr	HQ1298A	-	deoxyribodipyrimidine photolyase
290	 47.83	0	391786..392454	+	222	110667266	-	HQ1299A	-	F420-dependent NADP reductase
291	 44.55	-1	392726..393028	-	100	110667267	hisE	HQ1300A	-	phosphoribosyl-ATP pyrophosphatase
292	 49.19	0	393222..393839	-	205	110667268	hisH	HQ1301A	-	glutamine amidotransferase subunit PdxT
293	 46.06	0	393964..394128	-	54	110667269	secG	HQ1302A	-	preprotein translocase subunit SecG
294	 44.35	-1	395239..395583	+	114	110667270	-	HQ1303A	-	hypothetical protein
295	 46.05	0	395983..396627	-	214	110667271	-	HQ1304A	-	hypothetical protein
296	 48.13	0	396804..397310	+	168	110667272	-	HQ1305A	-	hypothetical protein
297	 49.45	0	397452..398723	-	423	110667273	dppF	HQ1306A	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase protein II
298	 51.37	0	398720..400105	-	461	110667274	dppD	HQ1307A	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase protein I
299	 50.05	0	400110..401132	-	340	110667275	dppC	HQ1308A	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease protein II
300	 50.10	0	401132..402139	-	335	110667276	dppB	HQ1309A	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease protein I
301	 50.21	0	402140..403792	-	550	110667277	dppA	HQ1310A	-	ABC-type dipeptide/oligopeptide/nickel transport system, substrate binding protein
302	 47.18	0	403949..404338	+	129	110667278	-	HQ1311A	-	hypothetical protein
303	 51.01	0	404910..405650	+	246	110667279	-	HQ1312A	-	hypothetical protein
304	 52.10	0	405778..407232	+	484	110667280	cat2	HQ1313A	-	cationic amino acid transport protein
305	 55.11	+1	407292..407957	+	221	110667281	trkA	HQ1314A	-	Trk-type potassium transport system, NAD-binding subunit
306	 51.16	0	408196..408885	+	229	110667282	asnC	HQ1315A	-	transcriptional regulator
307	 49.09	0	408949..409386	-	145	110667283	-	HQ1316A	-	IS200-type transposase
308	 53.90	+1	409406..410353	+	315	110667284	-	HQ1317A	-	IS1341-type transposase (nonfunctional,N-terminal part)
309	 54.50	+1	410354..410764	+	136	110667285	-	HQ1317B	-	IS1341-type transposase (nonfunctional,C-terminal part)
310	 52.61	0	411986..412426	-	146	110667286	act	HQ1319A	-	acyl-CoA thioester hydrolase
311	 45.35	0	413660..414283	-	207	110667287	-	HQ1321A	-	hypothetical protein
312	 44.83	-1	415018..415800	-	260	110667288	-	HQ1322A	-	hypothetical protein
313	 40.15	-2	416508..416771	+	87	110667289	trxA	HQ1323A	-	thioredoxin
314	 44.00	-1	417121..417270	+	49	110667290	rpl40e	HQ1324A	-	50S ribosomal protein L40e
315	 63.80	+2	418409..419245	-	278	110667291	-	HQ1326A	-	hypothetical protein
316	 50.60	0	420180..420347	+	55	110667292	-	HQ1327A	-	hypothetical protein
317	 47.37	0	422427..424856	+	809	110667293	tadA	HQ1328A	-	type II/IV secretion system protein, ATP binding protein
318	 49.43	0	424856..426793	+	645	110667294	tadC	HQ1329A	-	type II secretion system, transmembrane protein TadC
319	 50.81	0	426793..427599	+	268	110667295	-	HQ1330A	-	hypothetical protein
320	 43.25	-1	427596..428402	+	268	110667296	-	HQ1331A	-	hypothetical protein
321	 51.09	0	428399..429085	+	228	110667297	-	HQ1332A	-	hypothetical protein
322	 46.01	0	429608..430183	+	191	110667298	-	HQ1334A	-	hypothetical protein
323	 50.49	0	430681..431910	+	409	110667299	tif2g	HQ1335A	-	translation initiation factor IF-2 subunit gamma
324	 46.03	0	432086..432715	+	209	110667300	-	HQ1336A	-	rpo operon protein
325	 49.40	0	432719..433303	+	194	110667301	rpoE1	HQ1337A	-	DNA-directed RNA polymerase subunit E'
326	 48.48	0	433304..433501	+	65	110667302	rpoE2	HQ1338A	-	DNA-directed RNA polymerase subunit E''
327	 50.27	0	433512..434072	+	186	110667303	-	HQ1339A	-	rpo operon protein
328	 42.14	-1	434504..434821	+	105	110667304	rps24e	HQ1340A	-	30S ribosomal protein S24e
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.