IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2491	 47.93	0	2991264..2992037	-	257	110669467	urtD	HQ3616A	-	ABC-type urea transport system, ATP-binding protein I
2492	 46.85	0	2992034..2993224	-	396	110669468	urtC	HQ3617A	-	ABC-type urea transport system, permease protein II
2493	 47.79	0	2993221..2994147	-	308	110669469	urtB	HQ3618A	-	ABC-type urea transport system, permease protein I
2494	 47.49	0	2994180..2995472	-	430	110669470	urtA	HQ3619A	-	ABC-type urea transport systems,substrate-binding protein
2495	 47.22	0	2996267..2996806	-	179	110669471	nikR	HQ3620A	-	transcriptional regulator
2496	 50.84	0	2996866..2997522	+	218	110669472	cbiM1	HQ3621A	-	ABC-type cobalt transport system, permease protein
2497	 52.29	0	2997519..2997824	+	101	110669473	cbiM2	HQ3622A	-	ABC-type cobalt transport system, permease protein
2498	 51.05	0	2997821..2998633	+	270	110669474	cbiQ	HQ3623A	-	ABC-type cobalt transport system, permease protein
2499	 46.94	0	2998621..2999421	+	266	110669475	cbiO	HQ3624A	-	ABC-type cobalt transport system, ATP binding protein
2500	 49.34	0	2999779..3000159	+	126	110669476	ureB	HQ3625A	-	urease subunit beta
2501	 49.39	0	3000156..3001868	+	570	110669477	ureC	HQ3626A	-	urease subunit alpha
2502	 45.87	0	3001865..3002191	+	108	110669478	ureA	HQ3627A	-	urease subunit gamma
2503	 47.67	0	3002191..3002811	+	206	110669479	ureG	HQ3628A	-	urease accessory protein
2504	 50.05	0	3002808..3003722	+	304	110669480	ureD	HQ3629A	-	urease accessory protein
2505	 45.80	0	3003722..3004483	+	253	110669481	ureE	HQ3630A	-	urease accessory protein UreE
2506	 48.82	0	3004483..3005205	+	240	110669482	ureF	HQ3631A	-	urease accessory protein
2507	 34.58	-2	3006515..3006754	+	79	110669483	-	HQ3632A	-	insertion element protein (ISH2)
2508	 47.00	0	3007237..3007953	-	238	110669484	-	HQ3633A	-	hypothetical protein
2509	 48.76	0	3008148..3010325	-	725	110669485	-	HQ3634A	-	cationic amino acids transporter/stress response protein
2510	 48.31	0	3010322..3010735	-	137	110669486	trkA	HQ3635A	-	TrkA-potassium uptake domain-containing protein
2511	 59.68	+2	3012082..3012525	-	147	110669487	arsC	HQ3636A	-	arsenate reductase (glutaredoxin); protein-tyrosine-phosphatase
2512	 57.29	+2	3013106..3013297	-	63	110669488	-	HQ3637A	-	hypothetical protein
2513	 51.29	0	3014225..3015232	+	335	110669489	-	HQ3639A	-	hypothetical protein
2514	 51.07	0	3015883..3016395	-	170	110669490	-	HQ3640A	-	phosphoesterase,metallo-phosphoesterase-calcineu rin-like
2515	 47.02	0	3016636..3017724	+	362	110669491	pepB	HQ3641A	-	leucyl aminopeptidase
2516	 44.23	-1	3017916..3018374	-	152	110669492	lrp	HQ3642A	-	AsnC family transcriptional regulator
2517	 47.13	0	3018502..3019878	+	458	110669493	glnA	HQ3643A	-	glutamate--ammonia ligase
2518	 47.51	0	3020024..3020968	-	314	110669494	-	HQ3644A	-	PAP2 family phosphatase
2519	 44.11	-1	3020976..3021578	-	200	110669495	-	HQ3645A	-	hypothetical protein
2520	 48.53	0	3021713..3022870	-	385	110669496	trm1	HQ3646A	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
2521	 46.42	0	3023062..3023802	+	246	110669497	-	HQ3647A	-	hypothetical protein
2522	 48.28	0	3023838..3024881	+	347	110669498	adh	HQ3648A	-	alcohol dehydrogenase, NAD dependent
2523	 48.52	0	3026435..3027448	+	337	110669499	-	HQ3649A	-	hypothetical protein
2524	 48.91	0	3027506..3028378	+	290	110669500	prsA	HQ3650A	-	ribose-phosphate pyrophosphokinase
2525	 48.97	0	3028540..3028974	+	144	110669501	hit	HQ3651A	-	histidine triad (HIT) hydrolase
2526	 50.78	0	3029134..3029901	-	255	110669502	minD	HQ3652A	-	cell division inhibitor
2527	 50.10	0	3030402..3030920	-	172	110669503	-	HQ3653A	-	hypothetical protein
2528	 50.58	0	3031084..3032028	+	314	110669504	tfbA	HQ3654A	-	transcription initiation factor TFB
2529	 47.31	0	3032047..3032547	-	166	110669505	fbp	HQ3655A	-	fructose-2,6-bisphosphatase
2530	 51.34	0	3033302..3034012	-	236	110669506	minD	HQ3656A	-	cell division inhibitor MinD-like (ATPase involved in chromosome partitioning)
2531	 46.63	0	3034015..3034977	-	320	110669507	-	HQ3657A	-	hypothetical protein
2532	 47.06	0	3035356..3036411	-	351	110669508	-	HQ3658A	-	hypothetical protein
2533	 48.67	0	3036408..3036746	-	112	110669509	-	HQ3659A	-	hypothetical protein
2534	 47.62	0	3037054..3037347	-	97	110669510	-	HQ3660A	-	hypothetical protein
2535	 45.45	0	3037722..3039338	-	538	110669511	csg	HQ3661A	-	cell surface glycoprotein precursor
2536	 47.08	0	3039898..3046548	-	2216	110669512	mcm	HQ3662A	-	ATP-dependent DNA helicase (intein-containing)
2537	 46.94	0	3046648..3047301	-	217	110669513	-	HQ3663A	-	hypothetical protein
2538	 47.42	0	3047438..3048019	+	193	110669514	bioY	HQ3664A	-	biotin synthesis protein
2539	 46.58	0	3048044..3048760	+	238	110669515	cbiO	HQ3665A	-	cobalt ABC transporter ATP-binding protein
2540	 49.16	0	3048818..3049531	+	237	110669516	cbiQ	HQ3666A	-	cobalt ABC transporter permease
2541	 47.66	0	3049665..3049985	-	106	110669517	ferB	HQ3667A	-	ferredoxin II
2542	 47.43	0	3050135..3050872	-	245	110669518	guaA	HQ3668A	-	guanosine monophosphate synthetase (glutamine-hydrolyzing) (GMP synthase)
2543	 49.24	0	3051037..3051828	-	263	110669519	est	HQ3669A	-	3-oxoadipate enol-lactonase
2544	 47.66	0	3052113..3054884	-	923	110669520	alaS	HQ3670A	-	alanyl-tRNA synthetase
2545	 48.21	0	3055162..3057111	-	649	110669521	rfcA	HQ3671A	-	replication factor C small subunit I
2546	 45.65	0	3057561..3058169	+	202	110669522	-	HQ3672A	-	acetyltransferase
2547	 50.51	0	3058162..3059535	-	457	110669523	pmm	HQ3673A	-	phosphohexomutase (phosphoglucomutase; phosphomannomutase)
2548	 47.52	0	3059730..3060032	+	100	110669524	-	HQ3674A	-	hypothetical protein
2549	 44.07	-1	3060082..3060351	-	89	110669525	-	HQ3675A	-	nuclease
2550	 49.41	0	3060465..3061316	-	283	110669526	surE	HQ3676A	-	acid phosphatase
2551	 56.67	+2	3061507..3061656	-	49	110669527	-	HQ3677A	-	hypothetical protein
2552	 47.62	0	3062164..3062331	+	55	110669528	-	HQ3678A	-	hypothetical protein
2553	 45.99	0	3063169..3063879	-	236	110669529	rpiA	HQ3679A	-	ribose-5-phosphate epimerase
2554	 45.51	0	3064066..3065190	-	374	110669530	cdc6	HQ3680A	-	cell division control protein 6
2555	 49.22	0	3065299..3067413	-	704	110669531	mutS3	HQ3681A	-	DNA mismatch repair protein MutS homolog, MutS3
2556	 47.40	0	3067536..3068651	+	371	110669532	trmU	HQ3682A	-	tRNA methyl transferase
2557	 47.45	0	3068696..3070048	-	450	110669533	tatC1	HQ3683A	-	sec-independent protein translocase component TatC1
2558	 47.14	0	3070709..3072967	+	752	110669534	tatC2	HQ3684A	-	sec-independent protein translocase component TatC2
2559	 47.21	0	3073673..3074443	-	256	110669535	ftsJ	HQ3685A	-	ribosomal RNA large subunit methyltransferase J
2560	 46.91	0	3074896..3075639	+	247	110669536	pcn	HQ3686A	-	DNA polymerase sliding clamp
2561	 50.98	0	3075797..3076408	-	203	110669537	-	HQ3687A	-	hypothetical protein
2562	 48.15	0	3076471..3077712	+	413	110669538	priB	HQ3688A	-	DNA primase large subunit
2563	 48.21	0	3077775..3077969	-	64	110669539	-	HQ3689A	-	transporter
2564	 46.67	0	3078122..3078586	-	154	110669540	hjc	HQ3690A	-	Holliday junction resolvase
2565	 49.28	0	3078682..3079026	-	114	110669541	-	HQ3691A	-	hypothetical protein
2566	 45.55	0	3079214..3079696	+	160	110669542	mtfK1	HQ3692A	-	FKBP-type peptidylprolyl isomerase 1
2567	 54.95	+1	3079950..3080060	+	36	110669543	-	HQ3693A	-	hypothetical protein
2568	 47.72	0	3080255..3082012	-	585	110669544	uvrC	HQ3694A	-	excinuclease ABC chain C
2569	 47.22	0	3082333..3083340	+	335	110669545	nosF	HQ3696A	-	ABC-type copper transport system, ATP-binding protein
2570	 45.49	0	3083337..3084257	+	306	110669546	nosY	HQ3697A	-	ABC-type copper transport system, permease protein
2571	 47.04	0	3084276..3086588	-	770	110669547	ligA	HQ3698A	-	DNA ligase (NAD)
2572	 50.07	0	3086755..3088170	+	471	110669548	metY	HQ3699A	-	O-acetylhomoserine aminocarboxypropyltransferase (methionine synthase)
2573	 49.21	0	3088167..3089375	+	402	110669549	metA	HQ3700A	-	homoserine O-acetyltransferase
2574	 49.96	0	3089451..3090671	+	406	110669550	-	HQ3701A	-	major facilitator superfamily transporter
2575	 48.91	0	3090897..3092366	+	489	110669551	recJ	HQ3702A	-	single-stranded-DNA-specific exonuclease
2576	 44.60	-1	3092591..3092803	+	70	110669552	-	HQ3703A	-	hypothetical protein
2577	 51.30	0	3092813..3094003	+	396	110669553	-	HQ3704A	-	phosphate/sulfate permease
2578	 44.60	-1	3094120..3095619	-	499	110669554	-	HQ3705A	-	CBS domain-containing protein
2579	 46.60	0	3096052..3096360	+	102	110669555	grx	HQ3706A	-	glutaredoxin
2580	 46.32	0	3096360..3096875	+	171	110669556	-	HQ3707A	-	peroxiredoxin-like protein
2581	 47.03	0	3096885..3097592	+	235	110669557	-	HQ3708A	-	DNA binding protein; translation factor
2582	 47.21	0	3098024..3099832	+	602	110669558	glyS	HQ3709A	-	glycyl-tRNA synthetase
2583	 45.17	0	3099842..3100669	+	275	110669559	-	HQ3710A	-	homolog to dolichol kinase
2584	 49.58	0	3100982..3102175	+	397	110669560	argG	HQ3711A	-	argininosuccinate synthase
2585	 49.70	0	3102182..3103690	+	502	110669561	argH	HQ3712A	-	argininosuccinate lyase
2586	 51.52	0	3103925..3104089	+	54	110669562	-	HQ3713A	-	Arg cluster protein
2587	 49.00	0	3104091..3104990	+	299	110669563	argX	HQ3714A	-	arginine biosynthesis regulator
2588	 49.76	0	3105008..3106048	+	346	110669564	argC	HQ3715A	-	N-acetyl-gamma-glutamyl-phosphate reductase
2589	 48.44	0	3106048..3107040	+	330	110669565	argB	HQ3716A	-	acetylglutamate kinase
2590	 50.53	0	3107037..3108176	+	379	110669566	argD	HQ3717A	-	acetylornithine aminotransferase
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.