IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2469	 56.78	+2	2961046..2961561	+	171	110669445	-	HQ3589A	-	hypothetical protein
2470	 52.42	0	2963680..2966670	+	996	110669446	repH	HQ3590A	-	plasmid replication protein repH
2471	 54.27	+1	2966814..2967047	-	77	110669447	-	HQ3591A	-	hypothetical protein
2472	 51.45	0	2967421..2968110	-	229	110669448	-	HQ3592A	-	hypothetical protein
2473	 47.92	0	2968256..2969407	+	383	110669449	-	HQ3593A	-	hypothetical protein
2474	 54.90	+1	2969852..2971177	+	441	110669450	-	HQ3594A	-	hypothetical protein
2475	 54.44	+1	2971214..2971393	-	59	110669451	-	HQ3595A	-	hypothetical protein
2476	 59.19	+2	2972992..2974422	+	476	110669452	-	HQ3596A	-	hypothetical protein
2477	 52.06	0	2975098..2975631	+	177	110669453	-	HQ3597A	-	hypothetical protein
2478	 49.51	0	2975624..2976130	+	168	110669454	-	HQ3598A	-	hypothetical protein
2479	 45.99	0	2976478..2976864	-	128	110669455	-	HQ3599A	-	hypothetical protein
2480	 49.22	0	2977220..2978434	+	404	110669456	-	HQ3600A	-	chitinase domain-containing protein
2481	 50.94	0	2978786..2981278	-	830	110669457	cbp	HQ3601A	-	cell surface calcium-binding acidic-repeat-containing protein
2482	 58.82	+2	2982954..2983259	+	101	110669458	bcp	HQ3602A	-	peroxiredoxin
2483	 58.06	+2	2983381..2983833	-	150	110669459	-	HQ3603A	-	hypothetical protein
2484	 59.30	+2	2983830..2984576	-	248	110669460	-	HQ3604A	-	hypothetical protein
2485	 60.36	+2	2984756..2986183	+	475	110669461	-	HQ3605A	-	hypothetical protein
2486	 61.88	+2	2986224..2986913	+	229	110669462	-	HQ3606A	-	hypothetical protein
2487	 62.17	+2	2986906..2987283	+	125	110669463	-	HQ3607A	-	hypothetical protein
2488	 56.75	+2	2988443..2988694	+	83	110669464	-	HQ3610A	-	hypothetical protein
2489	 55.74	+1	2990225..2990407	+	60	110669465	-	HQ3614A	-	hypothetical protein
2490	 46.07	0	2990569..2991267	-	232	110669466	urtE	HQ3615A	-	ABC-type urea transport systems, ATP-binding protein II
2491	 47.93	0	2991264..2992037	-	257	110669467	urtD	HQ3616A	-	ABC-type urea transport system, ATP-binding protein I
2492	 46.85	0	2992034..2993224	-	396	110669468	urtC	HQ3617A	-	ABC-type urea transport system, permease protein II
2493	 47.79	0	2993221..2994147	-	308	110669469	urtB	HQ3618A	-	ABC-type urea transport system, permease protein I
2494	 47.49	0	2994180..2995472	-	430	110669470	urtA	HQ3619A	-	ABC-type urea transport systems,substrate-binding protein
2495	 47.22	0	2996267..2996806	-	179	110669471	nikR	HQ3620A	-	transcriptional regulator
2496	 50.84	0	2996866..2997522	+	218	110669472	cbiM1	HQ3621A	-	ABC-type cobalt transport system, permease protein
2497	 52.29	0	2997519..2997824	+	101	110669473	cbiM2	HQ3622A	-	ABC-type cobalt transport system, permease protein
2498	 51.05	0	2997821..2998633	+	270	110669474	cbiQ	HQ3623A	-	ABC-type cobalt transport system, permease protein
2499	 46.94	0	2998621..2999421	+	266	110669475	cbiO	HQ3624A	-	ABC-type cobalt transport system, ATP binding protein
2500	 49.34	0	2999779..3000159	+	126	110669476	ureB	HQ3625A	-	urease subunit beta
2501	 49.39	0	3000156..3001868	+	570	110669477	ureC	HQ3626A	-	urease subunit alpha
2502	 45.87	0	3001865..3002191	+	108	110669478	ureA	HQ3627A	-	urease subunit gamma
2503	 47.67	0	3002191..3002811	+	206	110669479	ureG	HQ3628A	-	urease accessory protein
2504	 50.05	0	3002808..3003722	+	304	110669480	ureD	HQ3629A	-	urease accessory protein
2505	 45.80	0	3003722..3004483	+	253	110669481	ureE	HQ3630A	-	urease accessory protein UreE
2506	 48.82	0	3004483..3005205	+	240	110669482	ureF	HQ3631A	-	urease accessory protein
2507	 34.58	-2	3006515..3006754	+	79	110669483	-	HQ3632A	-	insertion element protein (ISH2)
2508	 47.00	0	3007237..3007953	-	238	110669484	-	HQ3633A	-	hypothetical protein
2509	 48.76	0	3008148..3010325	-	725	110669485	-	HQ3634A	-	cationic amino acids transporter/stress response protein
2510	 48.31	0	3010322..3010735	-	137	110669486	trkA	HQ3635A	-	TrkA-potassium uptake domain-containing protein
2511	 59.68	+2	3012082..3012525	-	147	110669487	arsC	HQ3636A	-	arsenate reductase (glutaredoxin); protein-tyrosine-phosphatase
2512	 57.29	+2	3013106..3013297	-	63	110669488	-	HQ3637A	-	hypothetical protein
2513	 51.29	0	3014225..3015232	+	335	110669489	-	HQ3639A	-	hypothetical protein
2514	 51.07	0	3015883..3016395	-	170	110669490	-	HQ3640A	-	phosphoesterase,metallo-phosphoesterase-calcineu rin-like
2515	 47.02	0	3016636..3017724	+	362	110669491	pepB	HQ3641A	-	leucyl aminopeptidase
2516	 44.23	-1	3017916..3018374	-	152	110669492	lrp	HQ3642A	-	AsnC family transcriptional regulator
2517	 47.13	0	3018502..3019878	+	458	110669493	glnA	HQ3643A	-	glutamate--ammonia ligase
2518	 47.51	0	3020024..3020968	-	314	110669494	-	HQ3644A	-	PAP2 family phosphatase
2519	 44.11	-1	3020976..3021578	-	200	110669495	-	HQ3645A	-	hypothetical protein
2520	 48.53	0	3021713..3022870	-	385	110669496	trm1	HQ3646A	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
2521	 46.42	0	3023062..3023802	+	246	110669497	-	HQ3647A	-	hypothetical protein
2522	 48.28	0	3023838..3024881	+	347	110669498	adh	HQ3648A	-	alcohol dehydrogenase, NAD dependent
2523	 48.52	0	3026435..3027448	+	337	110669499	-	HQ3649A	-	hypothetical protein
2524	 48.91	0	3027506..3028378	+	290	110669500	prsA	HQ3650A	-	ribose-phosphate pyrophosphokinase
2525	 48.97	0	3028540..3028974	+	144	110669501	hit	HQ3651A	-	histidine triad (HIT) hydrolase
2526	 50.78	0	3029134..3029901	-	255	110669502	minD	HQ3652A	-	cell division inhibitor
2527	 50.10	0	3030402..3030920	-	172	110669503	-	HQ3653A	-	hypothetical protein
2528	 50.58	0	3031084..3032028	+	314	110669504	tfbA	HQ3654A	-	transcription initiation factor TFB
2529	 47.31	0	3032047..3032547	-	166	110669505	fbp	HQ3655A	-	fructose-2,6-bisphosphatase
2530	 51.34	0	3033302..3034012	-	236	110669506	minD	HQ3656A	-	cell division inhibitor MinD-like (ATPase involved in chromosome partitioning)
2531	 46.63	0	3034015..3034977	-	320	110669507	-	HQ3657A	-	hypothetical protein
2532	 47.06	0	3035356..3036411	-	351	110669508	-	HQ3658A	-	hypothetical protein
2533	 48.67	0	3036408..3036746	-	112	110669509	-	HQ3659A	-	hypothetical protein
2534	 47.62	0	3037054..3037347	-	97	110669510	-	HQ3660A	-	hypothetical protein
2535	 45.45	0	3037722..3039338	-	538	110669511	csg	HQ3661A	-	cell surface glycoprotein precursor
2536	 47.08	0	3039898..3046548	-	2216	110669512	mcm	HQ3662A	-	ATP-dependent DNA helicase (intein-containing)
2537	 46.94	0	3046648..3047301	-	217	110669513	-	HQ3663A	-	hypothetical protein
2538	 47.42	0	3047438..3048019	+	193	110669514	bioY	HQ3664A	-	biotin synthesis protein
2539	 46.58	0	3048044..3048760	+	238	110669515	cbiO	HQ3665A	-	cobalt ABC transporter ATP-binding protein
2540	 49.16	0	3048818..3049531	+	237	110669516	cbiQ	HQ3666A	-	cobalt ABC transporter permease
2541	 47.66	0	3049665..3049985	-	106	110669517	ferB	HQ3667A	-	ferredoxin II
2542	 47.43	0	3050135..3050872	-	245	110669518	guaA	HQ3668A	-	guanosine monophosphate synthetase (glutamine-hydrolyzing) (GMP synthase)
2543	 49.24	0	3051037..3051828	-	263	110669519	est	HQ3669A	-	3-oxoadipate enol-lactonase
2544	 47.66	0	3052113..3054884	-	923	110669520	alaS	HQ3670A	-	alanyl-tRNA synthetase
2545	 48.21	0	3055162..3057111	-	649	110669521	rfcA	HQ3671A	-	replication factor C small subunit I
2546	 45.65	0	3057561..3058169	+	202	110669522	-	HQ3672A	-	acetyltransferase
2547	 50.51	0	3058162..3059535	-	457	110669523	pmm	HQ3673A	-	phosphohexomutase (phosphoglucomutase; phosphomannomutase)
2548	 47.52	0	3059730..3060032	+	100	110669524	-	HQ3674A	-	hypothetical protein
2549	 44.07	-1	3060082..3060351	-	89	110669525	-	HQ3675A	-	nuclease
2550	 49.41	0	3060465..3061316	-	283	110669526	surE	HQ3676A	-	acid phosphatase
2551	 56.67	+2	3061507..3061656	-	49	110669527	-	HQ3677A	-	hypothetical protein
2552	 47.62	0	3062164..3062331	+	55	110669528	-	HQ3678A	-	hypothetical protein
2553	 45.99	0	3063169..3063879	-	236	110669529	rpiA	HQ3679A	-	ribose-5-phosphate epimerase
2554	 45.51	0	3064066..3065190	-	374	110669530	cdc6	HQ3680A	-	cell division control protein 6
2555	 49.22	0	3065299..3067413	-	704	110669531	mutS3	HQ3681A	-	DNA mismatch repair protein MutS homolog, MutS3
2556	 47.40	0	3067536..3068651	+	371	110669532	trmU	HQ3682A	-	tRNA methyl transferase
2557	 47.45	0	3068696..3070048	-	450	110669533	tatC1	HQ3683A	-	sec-independent protein translocase component TatC1
2558	 47.14	0	3070709..3072967	+	752	110669534	tatC2	HQ3684A	-	sec-independent protein translocase component TatC2
2559	 47.21	0	3073673..3074443	-	256	110669535	ftsJ	HQ3685A	-	ribosomal RNA large subunit methyltransferase J
2560	 46.91	0	3074896..3075639	+	247	110669536	pcn	HQ3686A	-	DNA polymerase sliding clamp
2561	 50.98	0	3075797..3076408	-	203	110669537	-	HQ3687A	-	hypothetical protein
2562	 48.15	0	3076471..3077712	+	413	110669538	priB	HQ3688A	-	DNA primase large subunit
2563	 48.21	0	3077775..3077969	-	64	110669539	-	HQ3689A	-	transporter
2564	 46.67	0	3078122..3078586	-	154	110669540	hjc	HQ3690A	-	Holliday junction resolvase
2565	 49.28	0	3078682..3079026	-	114	110669541	-	HQ3691A	-	hypothetical protein
2566	 45.55	0	3079214..3079696	+	160	110669542	mtfK1	HQ3692A	-	FKBP-type peptidylprolyl isomerase 1
2567	 54.95	+1	3079950..3080060	+	36	110669543	-	HQ3693A	-	hypothetical protein
2568	 47.72	0	3080255..3082012	-	585	110669544	uvrC	HQ3694A	-	excinuclease ABC chain C
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.