IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.79   STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2399	 44.38	-1	2891788..2892339	-	183	110669375	-	HQ3513A	-	hypothetical protein
2400	 43.94	-1	2892346..2892477	-	43	110669376	-	HQ3514A	-	hypothetical protein
2401	 59.46	+2	2893502..2893723	-	73	110669377	-	HQ3515A	-	hypothetical protein
2402	 53.08	+1	2893930..2894319	-	129	110669378	-	HQ3516A	-	ISH3-type transposase (fragment)
2403	 40.95	-2	2894825..2895415	-	196	110669379	gpmB	HQ3517A	-	fructose-2,6-bisphosphatase; phosphoglyceromutase,type 2
2404	 39.17	-2	2895420..2896139	-	239	110669380	neuA	HQ3518A	-	acylneuraminate cytidylyltransferase
2405	 40.90	-2	2896147..2897322	-	391	110669381	neuB	HQ3519A	-	sialic acid synthase (N-acetylneuraminate synthase) (N-acetylneuraminic acid synthase) (N-acetylneuraminate-9-phosphate synthase) (N-acetylneuraminic acid phosphate synthase)
2406	 52.69	+1	2897823..2898194	-	123	110669382	-	HQ3520A	-	transposase (ISH5)
2407	 49.12	0	2898266..2898436	-	56	110669383	-	HQ3521A	-	transposase (ISH5) (fragment)
2408	 33.12	-2	2898735..2899682	-	315	110669384	-	HQ3522A	-	hypothetical protein
2409	 43.95	-1	2901959..2903107	-	382	110669385	-	HQ3524A	-	protein transglucosylase
2410	 41.82	-1	2903292..2903621	-	109	110669386	-	HQ3525A	-	hypothetical protein
2411	 37.16	-2	2904305..2905141	-	278	110669387	bcbD	HQ3526A	-	capsular protein
2412	 58.47	+2	2905291..2905827	-	178	110669388	-	HQ3527A	-	ISH9-type transposase (nonfunctional, C-terminal part)
2413	 53.82	+1	2905828..2906115	-	95	110669389	-	HQ3527B	-	ISH9-type transposase (nonfunctional, N-terminal part)
2414	 51.67	0	2906609..2907862	+	417	110669390	-	HQ3528A	-	transposase (ISH8/ISH26)
2415	 38.06	-2	2908258..2908659	-	133	110669391	-	HQ3529A	-	sulfatase
2416	 39.98	-2	2908723..2909640	-	305	110669392	-	HQ3530A	-	hypothetical protein
2417	 38.16	-2	2910320..2911210	-	296	110669393	-	HQ3531A	-	hypothetical protein
2418	 43.19	-1	2911468..2912664	+	398	110669394	-	HQ3532A	-	hexosyltransferase; glycosyltransferase
2419	 47.31	0	2913009..2914811	+	600	110669395	-	HQ3533A	-	ABC-type multidrug/lipid transport system,permease and ATP-binding protein
2420	 55.88	+1	2915902..2916207	-	101	110669396	-	HQ3534A	-	hypothetical protein
2421	 52.45	0	2917032..2917910	+	292	110669397	-	HQ3536A	-	hypothetical protein
2422	 55.25	+1	2917911..2918672	+	253	110669398	-	HQ3537A	-	hypothetical protein
2423	 52.20	0	2918672..2919604	+	310	110669399	-	HQ3538A	-	hypothetical protein
2424	 53.83	+1	2919798..2920934	-	378	110669400	-	HQ3539A	-	hexosyltransferase; glycosyltransferase
2425	 54.18	+1	2921067..2922347	+	426	110669401	aslA	HQ3540A	-	arylsulfatase
2426	 39.32	-2	2922344..2922460	+	38	110669402	-	HQ3541A	-	hypothetical protein
2427	 54.93	+1	2922457..2922669	+	70	110669403	-	HQ3542A	-	hypothetical protein
2428	 61.51	+2	2922698..2923978	+	426	110669404	-	HQ3543A	-	arylsulfatase
2429	 62.67	+2	2924071..2925195	+	374	110669405	-	HQ3544A	-	hexosyltransferase; glycosyltransferase
2430	 56.58	+2	2925274..2926383	+	369	110669406	-	HQ3545A	-	arylsulfatase A-like
2431	 48.87	0	2926484..2928343	+	619	110669407	-	HQ3546A	-	hypothetical protein
2432	 41.40	-1	2928348..2929364	-	338	110669408	-	HQ3547A	-	hexosyltransferase; glycosyltransferase
2433	 46.43	0	2929361..2930284	-	307	110669409	-	HQ3548A	-	hypothetical protein
2434	 41.73	-1	2930368..2931546	-	392	110669410	-	HQ3549A	-	hexosyltransferase; glycosyltransferase
2435	 41.07	-2	2931564..2932274	-	236	110669411	-	HQ3550A	-	hypothetical protein
2436	 55.21	+1	2933102..2933773	-	223	110669412	-	HQ3551A	-	transposase homolog (ISHnew96)
2437	 50.84	0	2933897..2934370	+	157	110669413	-	HQ3552A	-	ISH4-type transposase
2438	 52.33	0	2934534..2934791	+	85	110669414	-	HQ3553A	-	transposase (ISH8/ISH26)
2439	 57.97	+2	2934800..2935006	+	68	110669415	-	HQ3554A	-	transposase (ISH8/ISH26)
2440	 51.13	0	2935496..2936737	+	413	110669416	-	HQ3555A	-	transposase (ISH8/ISH26)
2441	 39.12	-2	2936933..2938315	+	460	110669417	-	HQ3556A	-	sulfatase
2442	 55.75	+1	2938812..2939507	+	231	110669418	-	HQ3557A	-	ISRSO17-transposase
2443	 54.57	+1	2940331..2941206	+	291	110669419	-	HQ3558A	-	transposase (ISH11)
2444	 55.06	+1	2941236..2941502	-	88	110669420	-	HQ3559A	-	sulfatase (fragment)
2445	 59.12	+2	2942073..2942231	+	52	110669421	-	HQ3561A	-	hypothetical protein
2446	 58.42	+2	2943543..2943845	-	100	110669422	-	HQ3563A	-	hypothetical protein
2447	 60.34	+2	2944252..2944773	-	173	110669423	-	HQ3564A	-	hypothetical protein
2448	 59.92	+2	2945406..2945924	+	172	110669424	-	HQ3565A	-	hypothetical protein
2449	 62.34	+2	2946474..2946704	+	76	110669425	-	HQ3567A	-	hypothetical protein
2450	 57.86	+2	2946701..2947120	+	139	110669426	-	HQ3568A	-	hypothetical protein
2451	 59.23	+2	2948673..2949035	+	120	110669427	-	HQ3570A	-	hypothetical protein
2452	 59.65	+2	2949036..2949548	+	170	110669428	-	HQ3571A	-	hypothetical protein
2453	 61.84	+2	2949657..2949863	+	68	110669429	-	HQ3572A	-	hypothetical protein
2454	 58.78	+2	2949989..2950939	+	316	110669430	-	HQ3573A	-	hypothetical protein
2455	 59.70	+2	2951139..2952386	-	415	110669431	-	HQ3574A	-	IS1341-type transposase
2456	 56.72	+2	2952820..2953392	-	190	110669432	-	HQ3575A	-	hypothetical protein
2457	 62.21	+2	2953590..2954060	-	156	110669433	-	HQ3576A	-	hypothetical protein
2458	 60.23	+2	2954073..2954585	-	170	110669434	-	HQ3577A	-	hypothetical protein
2459	 60.82	+2	2954586..2954876	-	96	110669435	-	HQ3578A	-	hypothetical protein
2460	 64.58	+2	2955485..2955868	+	127	110669436	-	HQ3579D	-	hypothetical protein
2461	 58.56	+2	2955953..2956285	+	110	110669437	-	HQ3580A	-	hypothetical protein
2462	 58.33	+2	2956282..2956749	+	155	110669438	-	HQ3581A	-	hypothetical protein
2463	 61.62	+2	2956849..2957205	+	118	110669439	-	HQ3582A	-	hypothetical protein
2464	 57.88	+2	2957215..2957544	+	109	110669440	-	HQ3583A	-	hypothetical protein
2465	 61.88	+2	2957787..2958746	+	319	110669441	-	HQ3584A	-	hypothetical protein
2466	 55.75	+1	2959597..2960109	-	170	110669442	-	HQ3586A	-	integrase (PhiCh1 Int1-like)
2467	 58.22	+2	2960191..2960628	-	145	110669443	-	HQ3587A	-	hypothetical protein
2468	 57.58	+2	2960625..2960921	-	98	110669444	abrB	HQ3588A	-	transcription regulator
2469	 56.78	+2	2961046..2961561	+	171	110669445	-	HQ3589A	-	hypothetical protein
2470	 52.42	0	2963680..2966670	+	996	110669446	repH	HQ3590A	-	plasmid replication protein repH
2471	 54.27	+1	2966814..2967047	-	77	110669447	-	HQ3591A	-	hypothetical protein
2472	 51.45	0	2967421..2968110	-	229	110669448	-	HQ3592A	-	hypothetical protein
2473	 47.92	0	2968256..2969407	+	383	110669449	-	HQ3593A	-	hypothetical protein
2474	 54.90	+1	2969852..2971177	+	441	110669450	-	HQ3594A	-	hypothetical protein
2475	 54.44	+1	2971214..2971393	-	59	110669451	-	HQ3595A	-	hypothetical protein
2476	 59.19	+2	2972992..2974422	+	476	110669452	-	HQ3596A	-	hypothetical protein
2477	 52.06	0	2975098..2975631	+	177	110669453	-	HQ3597A	-	hypothetical protein
2478	 49.51	0	2975624..2976130	+	168	110669454	-	HQ3598A	-	hypothetical protein
2479	 45.99	0	2976478..2976864	-	128	110669455	-	HQ3599A	-	hypothetical protein
2480	 49.22	0	2977220..2978434	+	404	110669456	-	HQ3600A	-	chitinase domain-containing protein
2481	 50.94	0	2978786..2981278	-	830	110669457	cbp	HQ3601A	-	cell surface calcium-binding acidic-repeat-containing protein
2482	 58.82	+2	2982954..2983259	+	101	110669458	bcp	HQ3602A	-	peroxiredoxin
2483	 58.06	+2	2983381..2983833	-	150	110669459	-	HQ3603A	-	hypothetical protein
2484	 59.30	+2	2983830..2984576	-	248	110669460	-	HQ3604A	-	hypothetical protein
2485	 60.36	+2	2984756..2986183	+	475	110669461	-	HQ3605A	-	hypothetical protein
2486	 61.88	+2	2986224..2986913	+	229	110669462	-	HQ3606A	-	hypothetical protein
2487	 62.17	+2	2986906..2987283	+	125	110669463	-	HQ3607A	-	hypothetical protein
2488	 56.75	+2	2988443..2988694	+	83	110669464	-	HQ3610A	-	hypothetical protein
2489	 55.74	+1	2990225..2990407	+	60	110669465	-	HQ3614A	-	hypothetical protein
2490	 46.07	0	2990569..2991267	-	232	110669466	urtE	HQ3615A	-	ABC-type urea transport systems, ATP-binding protein II
2491	 47.93	0	2991264..2992037	-	257	110669467	urtD	HQ3616A	-	ABC-type urea transport system, ATP-binding protein I
2492	 46.85	0	2992034..2993224	-	396	110669468	urtC	HQ3617A	-	ABC-type urea transport system, permease protein II
2493	 47.79	0	2993221..2994147	-	308	110669469	urtB	HQ3618A	-	ABC-type urea transport system, permease protein I
2494	 47.49	0	2994180..2995472	-	430	110669470	urtA	HQ3619A	-	ABC-type urea transport systems,substrate-binding protein
2495	 47.22	0	2996267..2996806	-	179	110669471	nikR	HQ3620A	-	transcriptional regulator
2496	 50.84	0	2996866..2997522	+	218	110669472	cbiM1	HQ3621A	-	ABC-type cobalt transport system, permease protein
2497	 52.29	0	2997519..2997824	+	101	110669473	cbiM2	HQ3622A	-	ABC-type cobalt transport system, permease protein
2498	 51.05	0	2997821..2998633	+	270	110669474	cbiQ	HQ3623A	-	ABC-type cobalt transport system, permease protein
48.79	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.