IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
190	 48.42	0	257398..261474	+	1358	110667166	-	HQ1193A	-	cell surface glycoprotein
191	 46.52	0	262266..263228	-	320	110667167	-	HQ1194A	-	hypothetical protein
192	 49.77	0	263292..264143	-	283	110667168	gp2	HQ1195A	-	glycoprotein gp2
193	 50.39	0	264219..264863	-	214	110667169	-	HQ1196A	-	cell surface glycoprotein
194	 56.78	+2	265518..274175	-	2885	110667170	hmu2	HQ1197A	-	cell surface glycoprotein
195	 46.84	0	275115..275795	-	226	110667171	-	HQ1199A	-	hypothetical protein
196	 50.00	0	276008..277237	-	409	110667172	sub	HQ1200A	-	subtilisin-like serine protease
197	 51.03	0	277625..278206	-	193	110667173	-	HQ1201A	-	hypothetical protein
198	 51.16	0	279015..279575	+	186	110667174	-	HQ1202A	-	hypothetical protein
199	 52.54	0	279700..280251	+	183	110667175	-	HQ1203A	-	hypothetical protein
200	 47.95	0	280697..280915	+	72	110667176	-	HQ1204A	-	hypothetical protein
201	 48.47	0	281001..285881	+	1626	110667177	-	HQ1205A	-	cell surface adhesin
202	 47.41	0	286783..290562	+	1259	110667178	csg	HQ1206A	-	cell surface glycoprotein precursor
203	 48.13	0	291388..294354	+	988	110667179	csg	HQ1207A	-	cell surface glycoprotein precursor
204	 46.94	0	295263..297122	+	619	110667180	sub	HQ1208A	-	subtilisin-like serine protease
205	 45.77	0	298589..298966	+	125	110667181	-	HQ1210A	-	hypothetical protein
206	 43.78	-1	298971..299219	+	82	110667182	-	HQ1211A	-	hypothetical protein
207	 42.36	-1	299341..299739	+	132	110667183	-	HQ1212A	-	hypothetical protein
208	 50.15	0	301206..302834	+	542	110667184	-	HQ1214A	-	hypothetical protein
209	 50.00	0	302839..305178	+	779	110667185	-	HQ1215A	-	RND superfamily multidrug efflux system protein
210	 48.80	0	305171..305668	+	165	110667186	-	HQ1216A	-	stress response protein
211	 47.56	0	305828..307177	-	449	110667187	-	HQ1217A	-	hypothetical protein
212	 49.90	0	307442..307960	+	172	110667188	-	HQ1218A	-	hypothetical protein
213	 51.70	0	308086..308586	+	166	110667189	-	HQ1219A	-	hypothetical protein
214	 50.89	0	308586..310373	+	595	110667190	polIVx	HQ1220A	-	family X DNA-dependent DNA polymerase
215	 48.37	0	310541..311092	+	183	110667191	-	HQ1221A	-	hypothetical protein
216	 50.57	0	311119..312087	-	322	110667192	-	HQ1222A	-	hypothetical protein
217	 50.54	0	312287..312658	+	123	110667193	-	HQ1223A	-	hypothetical protein
218	 46.04	0	312943..313548	+	201	110667194	-	HQ1224A	-	protease
219	 47.96	0	313928..314932	-	334	110667195	-	HQ1225A	-	sodium/arsenite symporter family protein
220	 47.44	0	315361..316629	-	422	110667196	-	HQ1226A	-	hypothetical protein
221	 49.39	0	316777..317766	-	329	110667197	tfbA	HQ1227A	-	transcription initiation factor TFB
222	 51.09	0	317977..318573	+	198	110667198	rnhA	HQ1228A	-	ribonuclease H I
223	 42.50	-1	319258..319617	-	119	110667199	padR	HQ1230A	-	transcription regulator
224	 46.25	0	319761..320294	+	177	110667200	ipp	HQ1231A	-	inorganic pyrophosphatase
225	 42.86	-1	320415..320561	+	48	110667201	-	HQ1232A	-	hypothetical protein
226	 49.95	0	320798..321718	+	306	110667202	-	HQ1233A	-	rhomboid family protein/GlpG-like protein
227	 47.40	0	321732..322577	+	281	110667203	nfi	HQ1234A	-	endonuclease V (deoxyinosine 3'endonuclease)
228	 48.48	0	322826..323683	+	285	110667204	-	HQ1235A	-	short chain dehydrogenase/ reductase
229	 50.63	0	323862..325127	-	421	110667205	arsA	HQ1236A	-	transport ATPase ( substrate arsenite)
230	 47.86	0	325208..326329	-	373	110667206	aspC	HQ1237A	-	PLP-dependent aminotransferase ( aspartate aminotransferase)
231	 49.90	0	326649..327167	+	172	110667207	cinA	HQ1238A	-	CinA-like domain-containing protein
232	 43.71	-1	327354..327941	+	195	110667208	-	HQ1239A	-	hypothetical protein
233	 46.47	0	328105..328911	-	268	110667209	-	HQ1240A	-	hypothetical protein
234	 48.12	0	329301..329753	-	150	110667210	nusG	HQ1241A	-	transcription antitermination protein NusG
235	 43.68	-1	329760..329933	-	57	110667211	secE	HQ1242A	-	preprotein translocase subunit SecE
236	 50.72	0	330405..331721	-	438	110667212	ftsZ	HQ1243A	-	cell division protein FtsZ
237	 48.63	0	331955..333529	-	524	110667213	-	HQ1244A	-	hypothetical protein
238	 48.23	0	333818..334636	+	272	110667214	aroE	HQ1245A	-	shikimate 5-dehydrogenase
239	 48.99	0	334956..335798	+	280	110667215	-	HQ1246A	-	hypothetical protein
240	 48.70	0	335795..336718	+	307	110667216	ilvE	HQ1247A	-	branched-chain amino acid aminotransferase
241	 45.69	0	336773..337201	+	142	110667217	-	HQ1248A	-	homolog to Rieske iron sulfur protein
242	 44.73	-1	337547..338020	-	157	110667218	-	HQ1249A	-	GtrA-like family protein, cell surface polysaccharide biosynthesis protein
243	 47.98	0	338023..339087	-	354	110667219	-	HQ1250A	-	glycosyl tranferase; dolichyl-phosphate beta-glucosyltransferase
244	 48.41	0	339376..341895	+	839	110667220	-	HQ1251A	-	hypothetical protein
245	 46.51	0	341900..342157	-	85	110667221	-	HQ1252A	-	hypothetical protein
246	 46.81	0	342278..342559	+	93	110667222	rpl44e	HQ1253A	-	50S ribosomal protein L44e
247	 47.81	0	342563..342790	+	75	110667223	rps27e	HQ1254A	-	30S ribosomal protein S27e
248	 46.69	0	342888..343688	+	266	110667224	tif2a	HQ1255A	-	translation initiation factor IF-2 subunit alpha
249	 45.36	0	343813..343995	+	60	110667225	-	HQ1256A	-	H/ACA RNA-protein complex component Nop10p
250	 48.62	0	344000..344758	+	252	110667226	-	HQ1257A	-	hypothetical protein
251	 48.43	0	345472..345948	+	158	110667227	-	HQ1258A	-	hypothetical protein
252	 47.90	0	346446..347399	-	317	110667228	phfZ	HQ1259A	-	phenazine biosynthesis protein
253	 46.93	0	347514..348278	+	254	110667229	prt	HQ1260A	-	phosphoribosyltransferase
254	 46.81	0	348291..349247	+	318	110667230	-	HQ1261A	-	transporter
255	 46.14	0	349950..350855	+	301	110667231	mtaP	HQ1262A	-	5'-methylthioadenosine phosphorylase MtaP
256	 47.94	0	350967..351911	-	314	110667232	-	HQ1263A	-	smc operon protein
257	 46.32	0	351904..355500	-	1198	110667233	smc	HQ1264A	-	chromosome partition protein
258	 47.22	0	355630..355953	-	107	110667234	-	HQ1265A	-	smc operon protein
259	 45.47	0	356333..357823	+	496	110667235	gatB	HQ1266A	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
260	 47.79	0	358124..360697	+	857	110667236	topA	HQ1267A	-	DNA topoisomerase I
261	 45.64	0	361003..361197	-	64	110667237	csp	HQ1268A	-	cold shock protein
262	 47.78	0	361607..362326	+	239	110667238	pcrB	HQ1269A	-	geranylgeranylglyceryl phosphate synthase-like protein
263	 47.13	0	362844..364148	+	434	110667239	aspC	HQ1270A	-	aspartyl-tRNA synthetase
264	 49.73	0	364149..365063	+	304	110667240	kin	HQ1271A	-	sugar kinase
265	 49.26	0	365924..366733	+	269	110667241	-	HQ1272A	-	hypothetical protein
266	 47.70	0	367414..368415	-	333	110667242	-	HQ1275A	-	glutathione S-transferase
267	 49.89	0	368587..369510	+	307	110667243	-	HQ1276A	-	ribulose-1,5-biphosphate synthetase
268	 47.20	0	369729..370673	-	314	110667244	-	HQ1277A	-	hypothetical protein
269	 47.83	0	370670..371290	-	206	110667245	dcd	HQ1278A	-	deoxycytidine triphosphate deaminase
270	 47.20	0	372020..372358	+	112	110667246	-	HQ1279A	-	peptidyl-tRNA hydrolase
271	 46.38	0	373020..374123	+	367	110667247	-	HQ1280A	-	signal-transducing histidine kinase/response regulator
272	 46.05	0	374402..375856	+	484	110667248	truD	HQ1281A	-	tRNA pseudouridine synthase D
273	 50.21	0	376496..377218	+	240	110667249	-	HQ1282A	-	hypothetical protein
274	 50.18	0	377461..377739	+	92	110667250	rpl37aR	HQ1283A	-	ribosomal protein L37a.eR
275	 45.93	0	377755..377889	+	44	110667251	rpoP	HQ1284A	-	DNA-directed RNA polymerase subunit P
276	 44.60	-1	378104..378520	+	138	110667252	-	HQ1285A	-	rpo operon protein
277	 51.03	0	378743..379132	+	129	110667253	pfdB	HQ1286A	-	prefoldin beta subunit
278	 48.07	0	379125..379409	+	94	110667254	-	HQ1287A	-	hypothetical protein
279	 47.90	0	379628..381535	-	635	110667255	-	HQ1288A	-	hypothetical protein
280	 50.27	0	381564..382118	-	184	110667256	guaAa	HQ1289A	-	GMP synthase subunit A
281	 48.79	0	382589..383248	-	219	110667257	-	HQ1290A	-	hypothetical protein
282	 44.72	-1	383599..383958	+	119	110667258	-	HQ1291A	-	hypothetical protein
283	 50.75	0	384154..385749	+	531	110667259	leuA	HQ1292A	-	(R)-citramalate synthase
284	 47.97	0	385877..386245	+	122	110667260	-	HQ1293A	-	hypothetical protein
285	 51.63	0	387006..387464	-	152	110667261	-	HQ1294A	-	hypothetical protein
286	 46.60	0	387564..388769	+	401	110667262	-	HQ1295A	-	ABC-type transport system, ATP-binding protein
287	 47.91	0	388766..389602	+	278	110667263	-	HQ1296A	-	ABC-type transport system, permease protein
288	 50.13	0	389711..390103	-	130	110667264	-	HQ1297A	-	hypothetical protein
289	 48.64	0	390242..391633	+	463	110667265	phr	HQ1298A	-	deoxyribodipyrimidine photolyase
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.