IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2318	 46.88	0	2788450..2788914	-	154	110669294	pfdA	HQ3420A	-	prefoldin alpha subunit
2319	 51.85	0	2788914..2789129	-	71	110669295	rplX	HQ3421A	-	50S ribosomal protein LX
2320	 50.81	0	2790415..2791095	-	226	110669296	tif6	HQ3422A	-	translation initiation factor IF-6
2321	 54.84	+1	2791097..2791375	-	92	110669297	rpl31R	HQ3423A	-	50S ribosomal protein L31e
2322	 46.41	0	2791378..2791530	-	50	110669298	rpl39e	HQ3424A	-	50S ribosomal protein L39e
2323	 49.12	0	2791778..2792518	+	246	110669299	-	HQ3425A	-	TPR repeat-containing protein
2324	 46.24	0	2792515..2792979	+	154	110669300	-	HQ3426A	-	hypothetical protein
2325	 47.90	0	2793144..2794427	+	427	110669301	nifS	HQ3427A	-	cysteine desulfurase, class V aminotransferase
2326	 44.12	-1	2794571..2794987	+	138	110669302	nifU	HQ3428A	-	homolog to nitrogen fixation protein NifU
2327	 46.80	0	2795867..2796898	-	343	110669303	radA	HQ3429A	-	DNA repair and recombination protein RadA
2328	 49.83	0	2797297..2797902	-	201	110669304	-	HQ3430A	-	hypothetical protein
2329	 48.97	0	2797932..2798801	-	289	110669305	htpX	HQ3431A	-	heat shock protein HtpX
2330	 52.71	+1	2799525..2800391	+	288	110669306	-	HQ3432A	-	IS1341-type transposase (nonfunctional,N-terminal part)
2331	 47.82	0	2801969..2803114	+	381	110669307	-	HQ3435A	-	posible NMD protein affecting ribosome stability and mRNA decay
2332	 48.17	0	2804448..2806193	-	581	110669308	dinG	HQ3436A	-	Rad3-related DNA helicases DinG
2333	 48.53	0	2806303..2806506	-	67	110669309	-	HQ3437A	-	hypothetical protein
2334	 46.88	0	2806905..2807642	+	245	110669310	-	HQ3438A	-	hypothetical protein
2335	 47.49	0	2808107..2809102	+	331	110669311	-	HQ3439A	-	hypothetical protein
2336	 46.80	0	2809168..2809464	-	98	110669312	-	HQ3440A	-	hypothetical protein
2337	 49.39	0	2809588..2810403	+	271	110669313	-	HQ3441A	-	hypothetical protein
2338	 44.32	-1	2811415..2811933	-	172	110669314	-	HQ3442A	-	hypothetical protein
2339	 48.83	0	2812044..2813030	+	328	110669315	hemB	HQ3443A	-	delta-aminolevulinic acid dehydratase
2340	 50.18	0	2813317..2814729	+	470	110669316	amtB	HQ3444A	-	ammonium transporter
2341	 48.76	0	2814722..2815084	+	120	110669317	glnK	HQ3445A	-	nitrogen regulatory protein P-II
2342	 48.15	0	2815258..2815446	-	62	110669318	-	HQ3446A	-	hypothetical protein
2343	 48.40	0	2815728..2817068	+	446	110669319	hemL	HQ3447A	-	glutamate-1-semialdehyde 2,1-aminomutase
2344	 52.78	+1	2817230..2818129	+	299	110669320	-	HQ3448A	-	transposase
2345	 49.28	0	2818771..2819955	+	394	110669321	hemC	HQ3450A	-	hydroxymethylbilane synthase (porphobilinogen deaminase)
2346	 47.85	0	2819962..2820774	+	270	110669322	hemX	HQ3451A	-	uroporphyrin-III C-methyltransferase
2347	 50.25	0	2820843..2821628	+	261	110669323	hemD	HQ3452A	-	uroporphyrinogen-III synthase
2348	 48.07	0	2821708..2822121	+	137	110669324	-	HQ3453A	-	hypothetical protein
2349	 48.73	0	2822424..2823722	+	432	110669325	metY	HQ3454A	-	O-acetylhomoserine aminocarboxypropyltransferase; methionine synthase
2350	 48.27	0	2824064..2825221	+	385	110669326	pitA	HQ3455A	-	phosphate permease
2351	 48.92	0	2825660..2826076	+	138	110669327	fdx	HQ3457A	-	ferredoxin (2Fe-2S)
2352	 51.27	0	2826990..2827775	-	261	110669328	-	HQ3458A	-	hypothetical protein
2353	 50.22	0	2827927..2828838	+	303	110669329	mdhA	HQ3459A	-	malate dehydrogenase
2354	 48.57	0	2829663..2830082	+	139	110669330	-	HQ3460A	-	polA operon protein ( DNA-binding protein)
2355	 46.68	0	2830085..2836954	+	2289	110669331	polA2	HQ3461A	-	DNA polymerase II large subunit
2356	 50.45	0	2837301..2837411	+	36	110669332	-	HQ3462A	-	hypothetical protein
2357	 51.08	0	2837588..2838376	+	262	110669333	-	HQ3463A	-	phosphatase-like protein
2358	 49.78	0	2838513..2840117	-	534	110669334	aslA	HQ3464A	-	arylsulfatase; choline-sulfatase
2359	 51.61	0	2840453..2840824	-	123	110669335	-	HQ3465A	-	NifU domain-containing protein
2360	 44.15	-1	2840850..2841191	-	113	110669336	-	HQ3466A	-	hypothetical protein
2361	 48.29	0	2842067..2848306	-	2079	110669337	hmu3	HQ3467A	-	cell surface glycoprotein
2362	 47.64	0	2848443..2849924	-	493	110669338	-	HQ3468A	-	cell surface glycoprotein
2363	 43.66	-1	2849973..2851493	-	506	110669339	-	HQ3469A	-	cell surface glycoprotein
2364	 53.48	+1	2853023..2853712	+	229	110669340	-	HQ3472A	-	transposase
2365	 43.09	-1	2854534..2855661	+	375	110669341	-	HQ3473A	-	hypothetical protein
2366	 46.76	0	2855651..2856715	+	354	110669342	moxR	HQ3474A	-	MoxR-like ATPase (methanol dehydrogenase regulatory protein)
2367	 43.12	-1	2857167..2857442	+	91	110669343	-	HQ3475A	-	hypothetical protein
2368	 50.61	0	2857731..2858951	-	406	110669344	lolE	HQ3476A	-	ABC transporter permease
2369	 50.94	0	2858948..2860225	-	425	110669345	lolC	HQ3477A	-	ABC transporter permease
2370	 52.48	0	2860218..2860964	-	248	110669346	lolD	HQ3478A	-	ABC transporter ATP-binding protein LolDE
2371	 47.70	0	2861027..2863282	-	751	110669347	-	HQ3479A	-	extracellular mucin like protein
2372	 51.32	0	2863502..2865124	+	540	110669348	-	HQ3480A	-	hypothetical protein
2373	 53.23	+1	2865183..2865740	+	185	110669349	-	HQ3481A	-	hypothetical protein
2374	 48.19	0	2865737..2866759	+	340	110669350	-	HQ3482A	-	hypothetical protein
2375	 50.81	0	2867030..2867521	+	163	110669351	mutT	HQ3483A	-	Mut/nudix family protein
2376	 58.23	+2	2867762..2869006	-	414	110669352	-	HQ3484A	-	IS1341-type transposase
2377	 50.45	0	2870774..2871334	-	186	110669353	-	HQ3485A	-	hypothetical protein
2378	 52.72	+1	2871435..2871893	-	152	110669354	-	HQ3486A	-	hypothetical protein
2379	 47.26	0	2872011..2872448	-	145	110669355	-	HQ3487A	-	hypothetical protein
2380	 46.51	0	2872479..2872607	+	42	110669356	-	HQ3488A	-	hypothetical protein
2381	 55.30	+1	2873103..2873366	-	87	110669357	-	HQ3491A	-	transcription regulator
2382	 53.67	+1	2873708..2874007	-	99	110669358	-	HQ3493A	-	hypothetical protein
2383	 55.56	+1	2873994..2874686	-	230	110669359	-	HQ3494A	-	hypothetical protein
2384	 58.97	+2	2875560..2875832	+	90	110669360	-	HQ3496A	-	transcriptional regulator
2385	 57.99	+2	2875829..2876266	+	145	110669361	-	HQ3497A	-	hypothetical protein
2386	 57.42	+2	2877216..2877734	+	172	110669362	-	HQ3499A	-	hypothetical protein
2387	 57.81	+2	2877749..2878222	+	157	110669363	-	HQ3500A	-	hypothetical protein
2388	 62.83	+2	2878736..2879152	+	138	110669364	-	HQ3501A	-	hypothetical protein
2389	 55.56	+1	2879666..2879809	+	47	110669365	-	HQ3502A	-	hypothetical protein
2390	 50.16	0	2881247..2882488	+	413	110669366	-	HQ3503A	-	glycosyltransferase ( dolichyl-P-glucose synthetase)
2391	 46.41	0	2883567..2884025	+	152	110669367	-	HQ3505A	-	hypothetical protein
2392	 48.90	0	2884018..2884518	+	166	110669368	-	HQ3506A	-	hypothetical protein
2393	 48.02	0	2885196..2885951	-	251	110669369	graD	HQ3507A	-	sugar nucleotidyltransferase II ( glucose-1-phosphate thymidylyltransferase)
2394	 50.57	0	2886554..2887075	+	173	110669370	nudF	HQ3508A	-	ADP-ribose pyrophosphatase
2395	 50.69	0	2887551..2888570	-	339	110669371	galE	HQ3509A	-	nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
2396	 48.55	0	2888567..2889604	-	345	110669372	galE	HQ3510A	-	nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
2397	 38.19	-2	2889693..2890700	+	335	110669373	-	HQ3511A	-	hypothetical protein
2398	 35.98	-2	2890722..2891705	+	327	110669374	-	HQ3512A	-	SAM-dependent methyltransferase
2399	 44.38	-1	2891788..2892339	-	183	110669375	-	HQ3513A	-	hypothetical protein
2400	 43.94	-1	2892346..2892477	-	43	110669376	-	HQ3514A	-	hypothetical protein
2401	 59.46	+2	2893502..2893723	-	73	110669377	-	HQ3515A	-	hypothetical protein
2402	 53.08	+1	2893930..2894319	-	129	110669378	-	HQ3516A	-	ISH3-type transposase (fragment)
2403	 40.95	-2	2894825..2895415	-	196	110669379	gpmB	HQ3517A	-	fructose-2,6-bisphosphatase; phosphoglyceromutase,type 2
2404	 39.17	-2	2895420..2896139	-	239	110669380	neuA	HQ3518A	-	acylneuraminate cytidylyltransferase
2405	 40.90	-2	2896147..2897322	-	391	110669381	neuB	HQ3519A	-	sialic acid synthase (N-acetylneuraminate synthase) (N-acetylneuraminic acid synthase) (N-acetylneuraminate-9-phosphate synthase) (N-acetylneuraminic acid phosphate synthase)
2406	 52.69	+1	2897823..2898194	-	123	110669382	-	HQ3520A	-	transposase (ISH5)
2407	 49.12	0	2898266..2898436	-	56	110669383	-	HQ3521A	-	transposase (ISH5) (fragment)
2408	 33.12	-2	2898735..2899682	-	315	110669384	-	HQ3522A	-	hypothetical protein
2409	 43.95	-1	2901959..2903107	-	382	110669385	-	HQ3524A	-	protein transglucosylase
2410	 41.82	-1	2903292..2903621	-	109	110669386	-	HQ3525A	-	hypothetical protein
2411	 37.16	-2	2904305..2905141	-	278	110669387	bcbD	HQ3526A	-	capsular protein
2412	 58.47	+2	2905291..2905827	-	178	110669388	-	HQ3527A	-	ISH9-type transposase (nonfunctional, C-terminal part)
2413	 53.82	+1	2905828..2906115	-	95	110669389	-	HQ3527B	-	ISH9-type transposase (nonfunctional, N-terminal part)
2414	 51.67	0	2906609..2907862	+	417	110669390	-	HQ3528A	-	transposase (ISH8/ISH26)
2415	 38.06	-2	2908258..2908659	-	133	110669391	-	HQ3529A	-	sulfatase
2416	 39.98	-2	2908723..2909640	-	305	110669392	-	HQ3530A	-	hypothetical protein
2417	 38.16	-2	2910320..2911210	-	296	110669393	-	HQ3531A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.