IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2260	 49.44	0	2723249..2723782	-	177	110669236	-	HQ3361A	-	transcriptional regulator
2261	 50.57	0	2723842..2724456	-	204	110669237	pgsA	HQ3362A	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase
2262	 47.37	0	2724511..2725023	-	170	110669238	-	HQ3363A	-	nucleotide kinase
2263	 49.34	0	2725020..2726150	-	376	110669239	hisC	HQ3364A	-	histidinol-phosphate aminotransferase
2264	 49.72	0	2726735..2728369	-	544	110669240	-	HQ3365A	-	oxidoreductase-like protein
2265	 47.57	0	2728362..2728979	-	205	110669241	-	HQ3366A	-	hypothetical protein
2266	 47.95	0	2729469..2730200	-	243	110669242	hcpE	HQ3367A	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
2267	 45.80	0	2730408..2731121	+	237	110669243	-	HQ3368A	-	hypothetical protein
2268	 48.41	0	2731860..2731985	-	41	110669244	-	HQ3369A	-	putative transposase
2269	 55.23	+1	2732267..2733079	-	270	110669245	-	HQ3370A	-	transposase homolog (ISHnew96)
2270	 46.62	0	2733465..2734277	-	270	110669246	pho	HQ3371A	-	sugar phosphatase
2271	 46.00	0	2734808..2735257	+	149	110669247	-	HQ3372A	-	hypothetical protein
2272	 47.31	0	2735919..2736383	-	154	110669248	cumB	HQ3374A	-	cytosine/adenosine deaminases
2273	 45.52	0	2736485..2737477	-	330	110669249	nuc	HQ3375A	-	endonuclease staphylococcal nuclease-like
2274	 41.67	-1	2737628..2737951	-	107	110669250	-	HQ3376A	-	hypothetical protein
2275	 42.19	-1	2738131..2738322	+	63	110669251	-	HQ3377A	-	hypothetical protein
2276	 53.70	+1	2738784..2738837	-	17	110669252	-	HQ3378C	-	IS1341-type transposase (nonfunctional, central part)
2277	 52.00	0	2739640..2739714	+	24	110669253	-	HQ3379B	-	IS200-type transposase (nonfunctional,C-terminal part)
2278	 47.45	0	2739788..2740609	-	273	110669254	potC	HQ3380A	-	ABC-type spermidine/putrescine transport system,permease protein II
2279	 44.55	-1	2740726..2741661	-	311	110669255	potB	HQ3381A	-	ABC-type spermidine/putrescine transport system,permease protein I
2280	 47.17	0	2741664..2742986	-	440	110669256	potA	HQ3382A	-	ABC-type spermidine/putrescine transport system,ATP-binding protein
2281	 48.31	0	2742989..2744050	-	353	110669257	potD	HQ3383A	-	ABC-type spermidine/putrescine transport system,substrate-binding protein
2282	 53.07	+1	2745094..2745402	-	102	110669258	rps10p	HQ3384A	-	30S ribosomal protein S10P
2283	 49.61	0	2745403..2746668	-	421	110669259	tef1a	HQ3385A	-	elongation factor 1-alpha
2284	 51.08	0	2746996..2747970	-	324	110669260	hom	HQ3386A	-	homoserine dehydrogenase
2285	 50.58	0	2747972..2748742	-	256	110669261	-	HQ3387A	-	allosteric regulator of homoserine dehydrogenase
2286	 48.81	0	2749060..2751249	-	729	110669262	tef2	HQ3388A	-	elongation factor EF-2
2287	 49.83	0	2751655..2752539	+	294	110669263	-	HQ3389A	-	hypothetical protein
2288	 46.78	0	2752662..2753345	-	227	110669264	rps7	HQ3390A	-	30S ribosomal protein S7P
2289	 49.18	0	2753347..2753775	-	142	110669265	rps12P	HQ3391A	-	30S ribosomal protein S12P
2290	 47.99	0	2754036..2754458	-	140	110669266	nusA	HQ3392A	-	transcription elongation factor NusA-like protein
2291	 48.01	0	2754613..2756526	-	637	110669267	rpoA2	HQ3393A	-	DNA-directed RNA polymerase subunit A'' (subunit C)
2292	 49.17	0	2756519..2759455	-	978	110669268	rpoA	HQ3394A	-	DNA-directed RNA polymerase subunit alpha
2293	 49.56	0	2759574..2761409	-	611	110669269	rpoB1	HQ3395A	-	DNA-directed RNA polymerase subunit B'
2294	 47.59	0	2761641..2763218	-	525	110669270	rpoB2	HQ3396A	-	DNA-directed RNA polymerase subunit beta''
2295	 48.25	0	2763215..2763442	-	75	110669271	rpoH	HQ3397A	-	DNA-directed RNA polymerase subunit H
2296	 48.48	0	2763671..2764720	-	349	110669272	-	HQ3398A	-	RIO-like serine/threonine protein kinase II
2297	 53.95	+1	2764717..2765007	-	96	110669273	tif1A1	HQ3399A	-	translation initiation factor IF-1A
2298	 46.81	0	2765505..2766506	-	333	110669274	tyrS	HQ3400A	-	tyrosyl-tRNA synthetase
2299	 46.06	0	2766673..2767002	+	109	110669275	-	HQ3401A	-	hypothetical protein
2300	 50.28	0	2767683..2769665	-	660	110669276	-	HQ3402A	-	hypothetical protein
2301	 49.53	0	2769993..2770949	-	318	110669277	elaC	HQ3403A	-	ribonuclease Z (RNase Z) (tRNA 3 endonuclease)
2302	 45.52	0	2771238..2771516	+	92	110669278	-	HQ3404A	-	hypothetical protein
2303	 48.71	0	2771553..2772677	+	374	110669279	rfcC	HQ3405A	-	replication factor C small subunit 2
2304	 47.33	0	2772688..2773323	+	211	110669280	psd	HQ3406A	-	phosphatidylserine decarboxylase
2305	 48.19	0	2773313..2774416	-	367	110669281	-	HQ3407A	-	RNA methylase
2306	 49.38	0	2774567..2775694	+	375	110669282	tfbA	HQ3408A	-	transcription initiation factor TFB
2307	 44.87	-1	2775691..2776080	+	129	110669283	-	HQ3409A	-	hypothetical protein
2308	 45.10	0	2776154..2776714	+	186	110669284	tbpE	HQ3410A	-	transcription factor
2309	 43.90	-1	2777028..2777396	+	122	110669285	-	HQ3411A	-	hypothetical protein
2310	 50.00	0	2777565..2778410	-	281	110669286	hisG	HQ3412A	-	ATP phosphoribosyltransferase
2311	 47.37	0	2778667..2779998	+	443	110669287	trzA	HQ3413A	-	chlorohydrolase
2312	 48.88	0	2780406..2781704	+	432	110669288	achY	HQ3414A	-	S-adenosyl-L-homocysteine hydrolase
2313	 46.71	0	2781820..2783292	-	490	110669289	-	HQ3415A	-	sulfatase
2314	 47.31	0	2783782..2784339	-	185	110669290	-	HQ3416A	-	divalent cation transporter, subunit II, MgtE family protein
2315	 50.50	0	2784340..2784945	-	201	110669291	-	HQ3417A	-	divalent cation transporter, subunit I, MgtE family protein
2316	 51.18	0	2785076..2786476	-	466	110669292	srp54	HQ3418A	-	signal recognition particle 54K protein
2317	 46.70	0	2787177..2788418	-	413	110669293	ftsY	HQ3419A	-	signal recognition particle receptor SRalpha
2318	 46.88	0	2788450..2788914	-	154	110669294	pfdA	HQ3420A	-	prefoldin alpha subunit
2319	 51.85	0	2788914..2789129	-	71	110669295	rplX	HQ3421A	-	50S ribosomal protein LX
2320	 50.81	0	2790415..2791095	-	226	110669296	tif6	HQ3422A	-	translation initiation factor IF-6
2321	 54.84	+1	2791097..2791375	-	92	110669297	rpl31R	HQ3423A	-	50S ribosomal protein L31e
2322	 46.41	0	2791378..2791530	-	50	110669298	rpl39e	HQ3424A	-	50S ribosomal protein L39e
2323	 49.12	0	2791778..2792518	+	246	110669299	-	HQ3425A	-	TPR repeat-containing protein
2324	 46.24	0	2792515..2792979	+	154	110669300	-	HQ3426A	-	hypothetical protein
2325	 47.90	0	2793144..2794427	+	427	110669301	nifS	HQ3427A	-	cysteine desulfurase, class V aminotransferase
2326	 44.12	-1	2794571..2794987	+	138	110669302	nifU	HQ3428A	-	homolog to nitrogen fixation protein NifU
2327	 46.80	0	2795867..2796898	-	343	110669303	radA	HQ3429A	-	DNA repair and recombination protein RadA
2328	 49.83	0	2797297..2797902	-	201	110669304	-	HQ3430A	-	hypothetical protein
2329	 48.97	0	2797932..2798801	-	289	110669305	htpX	HQ3431A	-	heat shock protein HtpX
2330	 52.71	+1	2799525..2800391	+	288	110669306	-	HQ3432A	-	IS1341-type transposase (nonfunctional,N-terminal part)
2331	 47.82	0	2801969..2803114	+	381	110669307	-	HQ3435A	-	posible NMD protein affecting ribosome stability and mRNA decay
2332	 48.17	0	2804448..2806193	-	581	110669308	dinG	HQ3436A	-	Rad3-related DNA helicases DinG
2333	 48.53	0	2806303..2806506	-	67	110669309	-	HQ3437A	-	hypothetical protein
2334	 46.88	0	2806905..2807642	+	245	110669310	-	HQ3438A	-	hypothetical protein
2335	 47.49	0	2808107..2809102	+	331	110669311	-	HQ3439A	-	hypothetical protein
2336	 46.80	0	2809168..2809464	-	98	110669312	-	HQ3440A	-	hypothetical protein
2337	 49.39	0	2809588..2810403	+	271	110669313	-	HQ3441A	-	hypothetical protein
2338	 44.32	-1	2811415..2811933	-	172	110669314	-	HQ3442A	-	hypothetical protein
2339	 48.83	0	2812044..2813030	+	328	110669315	hemB	HQ3443A	-	delta-aminolevulinic acid dehydratase
2340	 50.18	0	2813317..2814729	+	470	110669316	amtB	HQ3444A	-	ammonium transporter
2341	 48.76	0	2814722..2815084	+	120	110669317	glnK	HQ3445A	-	nitrogen regulatory protein P-II
2342	 48.15	0	2815258..2815446	-	62	110669318	-	HQ3446A	-	hypothetical protein
2343	 48.40	0	2815728..2817068	+	446	110669319	hemL	HQ3447A	-	glutamate-1-semialdehyde 2,1-aminomutase
2344	 52.78	+1	2817230..2818129	+	299	110669320	-	HQ3448A	-	transposase
2345	 49.28	0	2818771..2819955	+	394	110669321	hemC	HQ3450A	-	hydroxymethylbilane synthase (porphobilinogen deaminase)
2346	 47.85	0	2819962..2820774	+	270	110669322	hemX	HQ3451A	-	uroporphyrin-III C-methyltransferase
2347	 50.25	0	2820843..2821628	+	261	110669323	hemD	HQ3452A	-	uroporphyrinogen-III synthase
2348	 48.07	0	2821708..2822121	+	137	110669324	-	HQ3453A	-	hypothetical protein
2349	 48.73	0	2822424..2823722	+	432	110669325	metY	HQ3454A	-	O-acetylhomoserine aminocarboxypropyltransferase; methionine synthase
2350	 48.27	0	2824064..2825221	+	385	110669326	pitA	HQ3455A	-	phosphate permease
2351	 48.92	0	2825660..2826076	+	138	110669327	fdx	HQ3457A	-	ferredoxin (2Fe-2S)
2352	 51.27	0	2826990..2827775	-	261	110669328	-	HQ3458A	-	hypothetical protein
2353	 50.22	0	2827927..2828838	+	303	110669329	mdhA	HQ3459A	-	malate dehydrogenase
2354	 48.57	0	2829663..2830082	+	139	110669330	-	HQ3460A	-	polA operon protein ( DNA-binding protein)
2355	 46.68	0	2830085..2836954	+	2289	110669331	polA2	HQ3461A	-	DNA polymerase II large subunit
2356	 50.45	0	2837301..2837411	+	36	110669332	-	HQ3462A	-	hypothetical protein
2357	 51.08	0	2837588..2838376	+	262	110669333	-	HQ3463A	-	phosphatase-like protein
2358	 49.78	0	2838513..2840117	-	534	110669334	aslA	HQ3464A	-	arylsulfatase; choline-sulfatase
2359	 51.61	0	2840453..2840824	-	123	110669335	-	HQ3465A	-	NifU domain-containing protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.