version 1.0
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494 2610 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2258 49.85 0 2720967..2722304 + 445 110669234 polIVy HQ3359A - DNA polymerase IV 2259 49.92 0 2722461..2723105 - 214 110669235 tpiA HQ3360A - triosephosphate isomerase 2260 49.44 0 2723249..2723782 - 177 110669236 - HQ3361A - transcriptional regulator 2261 50.57 0 2723842..2724456 - 204 110669237 pgsA HQ3362A - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase 2262 47.37 0 2724511..2725023 - 170 110669238 - HQ3363A - nucleotide kinase 2263 49.34 0 2725020..2726150 - 376 110669239 hisC HQ3364A - histidinol-phosphate aminotransferase 2264 49.72 0 2726735..2728369 - 544 110669240 - HQ3365A - oxidoreductase-like protein 2265 47.57 0 2728362..2728979 - 205 110669241 - HQ3366A - hypothetical protein 2266 47.95 0 2729469..2730200 - 243 110669242 hcpE HQ3367A - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 2267 45.80 0 2730408..2731121 + 237 110669243 - HQ3368A - hypothetical protein 2268 48.41 0 2731860..2731985 - 41 110669244 - HQ3369A - putative transposase 2269 55.23 +1 2732267..2733079 - 270 110669245 - HQ3370A - transposase homolog (ISHnew96) 2270 46.62 0 2733465..2734277 - 270 110669246 pho HQ3371A - sugar phosphatase 2271 46.00 0 2734808..2735257 + 149 110669247 - HQ3372A - hypothetical protein 2272 47.31 0 2735919..2736383 - 154 110669248 cumB HQ3374A - cytosine/adenosine deaminases 2273 45.52 0 2736485..2737477 - 330 110669249 nuc HQ3375A - endonuclease staphylococcal nuclease-like 2274 41.67 -1 2737628..2737951 - 107 110669250 - HQ3376A - hypothetical protein 2275 42.19 -1 2738131..2738322 + 63 110669251 - HQ3377A - hypothetical protein 2276 53.70 +1 2738784..2738837 - 17 110669252 - HQ3378C - IS1341-type transposase (nonfunctional, central part) 2277 52.00 0 2739640..2739714 + 24 110669253 - HQ3379B - IS200-type transposase (nonfunctional,C-terminal part) 2278 47.45 0 2739788..2740609 - 273 110669254 potC HQ3380A - ABC-type spermidine/putrescine transport system,permease protein II 2279 44.55 -1 2740726..2741661 - 311 110669255 potB HQ3381A - ABC-type spermidine/putrescine transport system,permease protein I 2280 47.17 0 2741664..2742986 - 440 110669256 potA HQ3382A - ABC-type spermidine/putrescine transport system,ATP-binding protein 2281 48.31 0 2742989..2744050 - 353 110669257 potD HQ3383A - ABC-type spermidine/putrescine transport system,substrate-binding protein 2282 53.07 +1 2745094..2745402 - 102 110669258 rps10p HQ3384A - 30S ribosomal protein S10P 2283 49.61 0 2745403..2746668 - 421 110669259 tef1a HQ3385A - elongation factor 1-alpha 2284 51.08 0 2746996..2747970 - 324 110669260 hom HQ3386A - homoserine dehydrogenase 2285 50.58 0 2747972..2748742 - 256 110669261 - HQ3387A - allosteric regulator of homoserine dehydrogenase 2286 48.81 0 2749060..2751249 - 729 110669262 tef2 HQ3388A - elongation factor EF-2 2287 49.83 0 2751655..2752539 + 294 110669263 - HQ3389A - hypothetical protein 2288 46.78 0 2752662..2753345 - 227 110669264 rps7 HQ3390A - 30S ribosomal protein S7P 2289 49.18 0 2753347..2753775 - 142 110669265 rps12P HQ3391A - 30S ribosomal protein S12P 2290 47.99 0 2754036..2754458 - 140 110669266 nusA HQ3392A - transcription elongation factor NusA-like protein 2291 48.01 0 2754613..2756526 - 637 110669267 rpoA2 HQ3393A - DNA-directed RNA polymerase subunit A'' (subunit C) 2292 49.17 0 2756519..2759455 - 978 110669268 rpoA HQ3394A - DNA-directed RNA polymerase subunit alpha 2293 49.56 0 2759574..2761409 - 611 110669269 rpoB1 HQ3395A - DNA-directed RNA polymerase subunit B' 2294 47.59 0 2761641..2763218 - 525 110669270 rpoB2 HQ3396A - DNA-directed RNA polymerase subunit beta'' 2295 48.25 0 2763215..2763442 - 75 110669271 rpoH HQ3397A - DNA-directed RNA polymerase subunit H 2296 48.48 0 2763671..2764720 - 349 110669272 - HQ3398A - RIO-like serine/threonine protein kinase II 2297 53.95 +1 2764717..2765007 - 96 110669273 tif1A1 HQ3399A - translation initiation factor IF-1A 2298 46.81 0 2765505..2766506 - 333 110669274 tyrS HQ3400A - tyrosyl-tRNA synthetase 2299 46.06 0 2766673..2767002 + 109 110669275 - HQ3401A - hypothetical protein 2300 50.28 0 2767683..2769665 - 660 110669276 - HQ3402A - hypothetical protein 2301 49.53 0 2769993..2770949 - 318 110669277 elaC HQ3403A - ribonuclease Z (RNase Z) (tRNA 3 endonuclease) 2302 45.52 0 2771238..2771516 + 92 110669278 - HQ3404A - hypothetical protein 2303 48.71 0 2771553..2772677 + 374 110669279 rfcC HQ3405A - replication factor C small subunit 2 2304 47.33 0 2772688..2773323 + 211 110669280 psd HQ3406A - phosphatidylserine decarboxylase 2305 48.19 0 2773313..2774416 - 367 110669281 - HQ3407A - RNA methylase 2306 49.38 0 2774567..2775694 + 375 110669282 tfbA HQ3408A - transcription initiation factor TFB 2307 44.87 -1 2775691..2776080 + 129 110669283 - HQ3409A - hypothetical protein 2308 45.10 0 2776154..2776714 + 186 110669284 tbpE HQ3410A - transcription factor 2309 43.90 -1 2777028..2777396 + 122 110669285 - HQ3411A - hypothetical protein 2310 50.00 0 2777565..2778410 - 281 110669286 hisG HQ3412A - ATP phosphoribosyltransferase 2311 47.37 0 2778667..2779998 + 443 110669287 trzA HQ3413A - chlorohydrolase 2312 48.88 0 2780406..2781704 + 432 110669288 achY HQ3414A - S-adenosyl-L-homocysteine hydrolase 2313 46.71 0 2781820..2783292 - 490 110669289 - HQ3415A - sulfatase 2314 47.31 0 2783782..2784339 - 185 110669290 - HQ3416A - divalent cation transporter, subunit II, MgtE family protein 2315 50.50 0 2784340..2784945 - 201 110669291 - HQ3417A - divalent cation transporter, subunit I, MgtE family protein 2316 51.18 0 2785076..2786476 - 466 110669292 srp54 HQ3418A - signal recognition particle 54K protein 2317 46.70 0 2787177..2788418 - 413 110669293 ftsY HQ3419A - signal recognition particle receptor SRalpha 2318 46.88 0 2788450..2788914 - 154 110669294 pfdA HQ3420A - prefoldin alpha subunit 2319 51.85 0 2788914..2789129 - 71 110669295 rplX HQ3421A - 50S ribosomal protein LX 2320 50.81 0 2790415..2791095 - 226 110669296 tif6 HQ3422A - translation initiation factor IF-6 2321 54.84 +1 2791097..2791375 - 92 110669297 rpl31R HQ3423A - 50S ribosomal protein L31e 2322 46.41 0 2791378..2791530 - 50 110669298 rpl39e HQ3424A - 50S ribosomal protein L39e 2323 49.12 0 2791778..2792518 + 246 110669299 - HQ3425A - TPR repeat-containing protein 2324 46.24 0 2792515..2792979 + 154 110669300 - HQ3426A - hypothetical protein 2325 47.90 0 2793144..2794427 + 427 110669301 nifS HQ3427A - cysteine desulfurase, class V aminotransferase 2326 44.12 -1 2794571..2794987 + 138 110669302 nifU HQ3428A - homolog to nitrogen fixation protein NifU 2327 46.80 0 2795867..2796898 - 343 110669303 radA HQ3429A - DNA repair and recombination protein RadA 2328 49.83 0 2797297..2797902 - 201 110669304 - HQ3430A - hypothetical protein 2329 48.97 0 2797932..2798801 - 289 110669305 htpX HQ3431A - heat shock protein HtpX 2330 52.71 +1 2799525..2800391 + 288 110669306 - HQ3432A - IS1341-type transposase (nonfunctional,N-terminal part) 2331 47.82 0 2801969..2803114 + 381 110669307 - HQ3435A - posible NMD protein affecting ribosome stability and mRNA decay 2332 48.17 0 2804448..2806193 - 581 110669308 dinG HQ3436A - Rad3-related DNA helicases DinG 2333 48.53 0 2806303..2806506 - 67 110669309 - HQ3437A - hypothetical protein 2334 46.88 0 2806905..2807642 + 245 110669310 - HQ3438A - hypothetical protein 2335 47.49 0 2808107..2809102 + 331 110669311 - HQ3439A - hypothetical protein 2336 46.80 0 2809168..2809464 - 98 110669312 - HQ3440A - hypothetical protein 2337 49.39 0 2809588..2810403 + 271 110669313 - HQ3441A - hypothetical protein 2338 44.32 -1 2811415..2811933 - 172 110669314 - HQ3442A - hypothetical protein 2339 48.83 0 2812044..2813030 + 328 110669315 hemB HQ3443A - delta-aminolevulinic acid dehydratase 2340 50.18 0 2813317..2814729 + 470 110669316 amtB HQ3444A - ammonium transporter 2341 48.76 0 2814722..2815084 + 120 110669317 glnK HQ3445A - nitrogen regulatory protein P-II 2342 48.15 0 2815258..2815446 - 62 110669318 - HQ3446A - hypothetical protein 2343 48.40 0 2815728..2817068 + 446 110669319 hemL HQ3447A - glutamate-1-semialdehyde 2,1-aminomutase 2344 52.78 +1 2817230..2818129 + 299 110669320 - HQ3448A - transposase 2345 49.28 0 2818771..2819955 + 394 110669321 hemC HQ3450A - hydroxymethylbilane synthase (porphobilinogen deaminase) 2346 47.85 0 2819962..2820774 + 270 110669322 hemX HQ3451A - uroporphyrin-III C-methyltransferase 2347 50.25 0 2820843..2821628 + 261 110669323 hemD HQ3452A - uroporphyrinogen-III synthase 2348 48.07 0 2821708..2822121 + 137 110669324 - HQ3453A - hypothetical protein 2349 48.73 0 2822424..2823722 + 432 110669325 metY HQ3454A - O-acetylhomoserine aminocarboxypropyltransferase; methionine synthase 2350 48.27 0 2824064..2825221 + 385 110669326 pitA HQ3455A - phosphate permease 2351 48.92 0 2825660..2826076 + 138 110669327 fdx HQ3457A - ferredoxin (2Fe-2S) 2352 51.27 0 2826990..2827775 - 261 110669328 - HQ3458A - hypothetical protein 2353 50.22 0 2827927..2828838 + 303 110669329 mdhA HQ3459A - malate dehydrogenase 2354 48.57 0 2829663..2830082 + 139 110669330 - HQ3460A - polA operon protein ( DNA-binding protein) 2355 46.68 0 2830085..2836954 + 2289 110669331 polA2 HQ3461A - DNA polymerase II large subunit 2356 50.45 0 2837301..2837411 + 36 110669332 - HQ3462A - hypothetical protein 2357 51.08 0 2837588..2838376 + 262 110669333 - HQ3463A - phosphatase-like protein 48.79 MEAN 3.84 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0