IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2211	 45.50	0	2665297..2665674	-	125	110669187	rps8R	HQ3309A	-	30S ribosomal protein S8e
2212	 46.75	0	2665788..2666249	+	153	110669188	-	HQ3310A	-	hypothetical protein
2213	 49.31	0	2666753..2670019	-	1088	110669189	carB	HQ3311A	-	carbamoyl phosphate synthase large subunit
2214	 48.21	0	2670150..2670680	-	176	110669190	-	HQ3312A	-	hypothetical protein
2215	 42.46	-1	2670875..2671126	-	83	110669191	-	HQ3313A	-	hypothetical protein
2216	 45.57	0	2671184..2671510	-	108	110669192	-	HQ3314A	-	hypothetical protein
2217	 46.25	0	2671920..2672399	-	159	110669193	fxsA	HQ3315A	-	FxsA
2218	 49.04	0	2672528..2674246	+	572	110669194	-	HQ3316A	-	hypothetical protein
2219	 46.88	0	2674712..2675641	-	309	110669195	-	HQ3317A	-	GTP cyclohydrolase
2220	 48.98	0	2675836..2676327	-	163	110669196	-	HQ3318A	-	hypothetical protein
2221	 47.23	0	2676676..2677920	-	414	110669197	hcaD	HQ3319A	-	ferredoxin:NAD+ oxidoreductase
2222	 43.68	-1	2678204..2678812	+	202	110669198	-	HQ3320A	-	hypothetical protein
2223	 46.86	0	2679052..2680485	-	477	110669199	hemY	HQ3321A	-	hypothetical protein
2224	 52.95	+1	2680752..2681633	+	293	110669200	thrB	HQ3322A	-	homoserine kinase
2225	 51.05	0	2681986..2682894	-	302	110669201	pyroA	HQ3323A	-	pyridoxine biosynthesis protein
2226	 46.83	0	2683074..2683910	+	278	110669202	-	HQ3324A	-	hypothetical protein
2227	 46.12	0	2684111..2685064	-	317	110669203	-	HQ3325A	-	hypothetical protein
2228	 47.85	0	2685305..2686819	-	504	110669204	panF	HQ3326A	-	sodium/pantothenate symporter
2229	 51.19	0	2686812..2687063	-	83	110669205	-	HQ3327A	-	hypothetical protein
2230	 46.98	0	2687332..2689053	+	573	110669206	dnaG	HQ3328A	-	DNA primase
2231	 44.21	-1	2689456..2690025	-	189	110669207	-	HQ3329A	-	hypothetical protein
2232	 50.00	0	2690022..2691347	-	441	110669208	-	HQ3330A	-	hypothetical protein
2233	 47.13	0	2691487..2692095	+	202	110669209	uppS	HQ3331A	-	di-trans,poly-cis-decaprenylcistransferase
2234	 50.52	0	2692129..2693082	-	317	110669210	uppS	HQ3332A	-	di-trans,poly-cis-decaprenylcistransferase
2235	 42.61	-1	2693294..2693692	+	132	110669211	-	HQ3333A	-	hypothetical protein
2236	 45.99	0	2693829..2694950	+	373	110669212	nirH	HQ3334A	-	heme biosynthesis protein nirH/G (nirL/nirD homolog)
2237	 51.19	0	2695051..2695722	+	223	110669213	cysG	HQ3335A	-	siroheme synthase
2238	 48.79	0	2695719..2697083	+	454	110669214	hemA	HQ3336A	-	glutamyl-tRNA reductase
2239	 48.15	0	2698501..2698635	-	44	110669215	-	HQ3339A	-	hypothetical protein
2240	 45.33	0	2698694..2698843	+	49	110669216	-	HQ3340A	-	IS200-type transposase (nonfunctional,N-terminal part)
2241	 42.75	-1	2699409..2699684	+	91	110669217	phhB	HQ3342A	-	pterin-4-alpha-carbinolamine dehydratase
2242	 47.83	0	2699727..2700464	+	245	110669218	pgp	HQ3343A	-	phosphatase
2243	 50.79	0	2700569..2702458	-	629	110669219	moeA	HQ3344A	-	molybdenum cofactor biosynthesis protein MoeA
2244	 50.37	0	2702455..2703804	-	449	110669220	moeA	HQ3345A	-	molybdenum cofactor biosynthesis protein MoeA
2245	 54.01	+1	2703998..2704384	+	128	110669221	hsp20	HQ3346A	-	hsp20 type chaperone
2246	 46.40	0	2704408..2706075	+	555	110669222	ubiB	HQ3347A	-	ubiquinone biosynthesis transmembrane protein
2247	 46.93	0	2706236..2706610	+	124	110669223	tif5A	HQ3348A	-	translation initiation factor IF-5A
2248	 50.12	0	2706625..2707452	+	275	110669224	speB	HQ3349A	-	agmatinase
2249	 50.50	0	2707844..2708641	-	265	110669225	surE	HQ3350A	-	acid phosphatase
2250	 47.49	0	2708857..2710488	-	543	110669226	-	HQ3351A	-	tyrA operon protein
2251	 50.19	0	2710485..2711255	-	256	110669227	tyrA	HQ3352A	-	prephenate dehydrogenase
2252	 46.78	0	2711454..2712695	-	413	110669228	pepQ	HQ3353A	-	Xaa-Pro aminopeptidase
2253	 47.09	0	2713064..2713492	-	142	110669229	lrp	HQ3354A	-	transcription regulator
2254	 46.86	0	2713574..2714512	-	312	110669230	porB	HQ3355A	-	pyruvate--ferredoxin oxidoreductase, beta subunit
2255	 48.34	0	2714515..2716413	-	632	110669231	porA	HQ3356A	-	pyruvate--ferredoxin oxidoreductase, alpha subunit
2256	 49.65	0	2716917..2718068	-	383	110669232	aroC	HQ3357A	-	chorismate synthase
2257	 49.27	0	2718330..2719628	-	432	110669233	aroA	HQ3358A	-	3-phosphoshikimate 1-carboxyvinyltransferase
2258	 49.85	0	2720967..2722304	+	445	110669234	polIVy	HQ3359A	-	DNA polymerase IV
2259	 49.92	0	2722461..2723105	-	214	110669235	tpiA	HQ3360A	-	triosephosphate isomerase
2260	 49.44	0	2723249..2723782	-	177	110669236	-	HQ3361A	-	transcriptional regulator
2261	 50.57	0	2723842..2724456	-	204	110669237	pgsA	HQ3362A	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase
2262	 47.37	0	2724511..2725023	-	170	110669238	-	HQ3363A	-	nucleotide kinase
2263	 49.34	0	2725020..2726150	-	376	110669239	hisC	HQ3364A	-	histidinol-phosphate aminotransferase
2264	 49.72	0	2726735..2728369	-	544	110669240	-	HQ3365A	-	oxidoreductase-like protein
2265	 47.57	0	2728362..2728979	-	205	110669241	-	HQ3366A	-	hypothetical protein
2266	 47.95	0	2729469..2730200	-	243	110669242	hcpE	HQ3367A	-	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
2267	 45.80	0	2730408..2731121	+	237	110669243	-	HQ3368A	-	hypothetical protein
2268	 48.41	0	2731860..2731985	-	41	110669244	-	HQ3369A	-	putative transposase
2269	 55.23	+1	2732267..2733079	-	270	110669245	-	HQ3370A	-	transposase homolog (ISHnew96)
2270	 46.62	0	2733465..2734277	-	270	110669246	pho	HQ3371A	-	sugar phosphatase
2271	 46.00	0	2734808..2735257	+	149	110669247	-	HQ3372A	-	hypothetical protein
2272	 47.31	0	2735919..2736383	-	154	110669248	cumB	HQ3374A	-	cytosine/adenosine deaminases
2273	 45.52	0	2736485..2737477	-	330	110669249	nuc	HQ3375A	-	endonuclease staphylococcal nuclease-like
2274	 41.67	-1	2737628..2737951	-	107	110669250	-	HQ3376A	-	hypothetical protein
2275	 42.19	-1	2738131..2738322	+	63	110669251	-	HQ3377A	-	hypothetical protein
2276	 53.70	+1	2738784..2738837	-	17	110669252	-	HQ3378C	-	IS1341-type transposase (nonfunctional, central part)
2277	 52.00	0	2739640..2739714	+	24	110669253	-	HQ3379B	-	IS200-type transposase (nonfunctional,C-terminal part)
2278	 47.45	0	2739788..2740609	-	273	110669254	potC	HQ3380A	-	ABC-type spermidine/putrescine transport system,permease protein II
2279	 44.55	-1	2740726..2741661	-	311	110669255	potB	HQ3381A	-	ABC-type spermidine/putrescine transport system,permease protein I
2280	 47.17	0	2741664..2742986	-	440	110669256	potA	HQ3382A	-	ABC-type spermidine/putrescine transport system,ATP-binding protein
2281	 48.31	0	2742989..2744050	-	353	110669257	potD	HQ3383A	-	ABC-type spermidine/putrescine transport system,substrate-binding protein
2282	 53.07	+1	2745094..2745402	-	102	110669258	rps10p	HQ3384A	-	30S ribosomal protein S10P
2283	 49.61	0	2745403..2746668	-	421	110669259	tef1a	HQ3385A	-	elongation factor 1-alpha
2284	 51.08	0	2746996..2747970	-	324	110669260	hom	HQ3386A	-	homoserine dehydrogenase
2285	 50.58	0	2747972..2748742	-	256	110669261	-	HQ3387A	-	allosteric regulator of homoserine dehydrogenase
2286	 48.81	0	2749060..2751249	-	729	110669262	tef2	HQ3388A	-	elongation factor EF-2
2287	 49.83	0	2751655..2752539	+	294	110669263	-	HQ3389A	-	hypothetical protein
2288	 46.78	0	2752662..2753345	-	227	110669264	rps7	HQ3390A	-	30S ribosomal protein S7P
2289	 49.18	0	2753347..2753775	-	142	110669265	rps12P	HQ3391A	-	30S ribosomal protein S12P
2290	 47.99	0	2754036..2754458	-	140	110669266	nusA	HQ3392A	-	transcription elongation factor NusA-like protein
2291	 48.01	0	2754613..2756526	-	637	110669267	rpoA2	HQ3393A	-	DNA-directed RNA polymerase subunit A'' (subunit C)
2292	 49.17	0	2756519..2759455	-	978	110669268	rpoA	HQ3394A	-	DNA-directed RNA polymerase subunit alpha
2293	 49.56	0	2759574..2761409	-	611	110669269	rpoB1	HQ3395A	-	DNA-directed RNA polymerase subunit B'
2294	 47.59	0	2761641..2763218	-	525	110669270	rpoB2	HQ3396A	-	DNA-directed RNA polymerase subunit beta''
2295	 48.25	0	2763215..2763442	-	75	110669271	rpoH	HQ3397A	-	DNA-directed RNA polymerase subunit H
2296	 48.48	0	2763671..2764720	-	349	110669272	-	HQ3398A	-	RIO-like serine/threonine protein kinase II
2297	 53.95	+1	2764717..2765007	-	96	110669273	tif1A1	HQ3399A	-	translation initiation factor IF-1A
2298	 46.81	0	2765505..2766506	-	333	110669274	tyrS	HQ3400A	-	tyrosyl-tRNA synthetase
2299	 46.06	0	2766673..2767002	+	109	110669275	-	HQ3401A	-	hypothetical protein
2300	 50.28	0	2767683..2769665	-	660	110669276	-	HQ3402A	-	hypothetical protein
2301	 49.53	0	2769993..2770949	-	318	110669277	elaC	HQ3403A	-	ribonuclease Z (RNase Z) (tRNA 3 endonuclease)
2302	 45.52	0	2771238..2771516	+	92	110669278	-	HQ3404A	-	hypothetical protein
2303	 48.71	0	2771553..2772677	+	374	110669279	rfcC	HQ3405A	-	replication factor C small subunit 2
2304	 47.33	0	2772688..2773323	+	211	110669280	psd	HQ3406A	-	phosphatidylserine decarboxylase
2305	 48.19	0	2773313..2774416	-	367	110669281	-	HQ3407A	-	RNA methylase
2306	 49.38	0	2774567..2775694	+	375	110669282	tfbA	HQ3408A	-	transcription initiation factor TFB
2307	 44.87	-1	2775691..2776080	+	129	110669283	-	HQ3409A	-	hypothetical protein
2308	 45.10	0	2776154..2776714	+	186	110669284	tbpE	HQ3410A	-	transcription factor
2309	 43.90	-1	2777028..2777396	+	122	110669285	-	HQ3411A	-	hypothetical protein
2310	 50.00	0	2777565..2778410	-	281	110669286	hisG	HQ3412A	-	ATP phosphoribosyltransferase
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.