IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2158	 48.34	0	2588594..2589919	-	441	110669134	-	HQ3253A	-	hypothetical protein
2159	 49.40	0	2590046..2591638	+	530	110669135	-	HQ3254A	-	hypothetical protein
2160	 51.84	0	2591750..2592565	+	271	110669136	idsA	HQ3255A	-	multifunctional long-chain (E)-prenyl diphosphate synthase
2161	 50.35	0	2592624..2593763	-	379	110669137	-	HQ3256A	-	hypothetical protein
2162	 47.29	0	2594029..2595024	+	331	110669138	-	HQ3257A	-	hypothetical protein
2163	 46.83	0	2595089..2595844	-	251	110669139	-	HQ3258A	-	hypothetical protein
2164	 48.86	0	2595934..2596416	+	160	110669140	-	HQ3259A	-	hypothetical protein
2165	 48.44	0	2596590..2597198	+	202	110669141	tfx	HQ3260A	-	putative transcriptional regulator
2166	 47.87	0	2597255..2598403	-	382	110669142	manC	HQ3261A	-	mannose-1-phosphate guanylyltransferase
2167	 48.23	0	2598414..2598836	-	140	110669143	-	HQ3262A	-	hypothetical protein
2168	 48.45	0	2599263..2600195	+	310	110669144	-	HQ3263A	-	replication factor A
2169	 47.60	0	2600197..2600820	+	207	110669145	-	HQ3264A	-	hypothetical protein
2170	 44.60	-1	2601133..2601567	+	144	110669146	-	HQ3265A	-	hypothetical protein
2171	 46.27	0	2601914..2602369	-	151	110669147	-	HQ3266A	-	helicase
2172	 50.81	0	2602766..2603875	+	369	110669148	-	HQ3267A	-	putative phage integrase
2173	 57.86	+2	2604114..2604851	-	245	110669149	cdc6_	HQ3268A	-	cell division control protein cdc6-like protein
2174	 52.38	0	2605109..2606137	+	342	110669150	cdc6_	HQ3269A	-	cell division control protein cdc6-like protein
2175	 56.04	+1	2606123..2606536	-	137	110669151	-	HQ3270A	-	calcium binding
2176	 54.37	+1	2607018..2608253	-	411	110669152	int	HQ3271A	-	phage integrase
2177	 55.49	+1	2608586..2610535	-	649	110669153	-	HQ3272A	-	hypothetical protein
2178	 48.04	0	2610658..2611371	+	237	110669154	-	HQ3273A	-	hypothetical protein
2179	 51.46	0	2611501..2616792	-	1763	110669155	-	HQ3274A	-	helicase
2180	 47.04	0	2616845..2620900	-	1351	110669156	-	HQ3275A	-	type II restriction/modification enzyme
2181	 52.71	+1	2620897..2623776	-	959	110669157	hepA	HQ3276A	-	ATP-dependent helicase HepA
2182	 54.09	+1	2623995..2625362	-	455	110669158	-	HQ3277A	-	adenine-specific DNA methyltransferase
2183	 51.18	0	2625428..2626273	-	281	110669159	-	HQ3278A	-	hypothetical protein
2184	 49.56	0	2626426..2626653	-	75	110669160	-	HQ3279A	-	hypothetical protein
2185	 48.56	0	2626854..2629604	-	916	110669161	-	HQ3280A	-	hypothetical protein
2186	 58.12	+2	2630461..2631957	-	498	110669162	-	HQ3281A	-	hypothetical protein
2187	 56.72	+2	2632395..2633450	-	351	110669163	-	HQ3282A	-	hypothetical protein
2188	 52.39	0	2633527..2634612	+	361	110669164	-	HQ3283A	-	hypothetical protein
2189	 54.55	+1	2634886..2635743	-	285	110669165	htpX	HQ3284A	-	protease HtpX
2190	 53.12	+1	2636491..2636970	-	159	110669166	-	HQ3285A	-	hypothetical protein
2191	 56.06	+1	2637051..2637578	-	175	110669167	-	HQ3286A	-	hypothetical protein
2192	 57.92	+2	2637849..2638088	+	79	110669168	-	HQ3287A	-	hypothetical protein
2193	 55.96	+1	2638145..2639218	+	357	110669169	-	HQ3288A	-	hypothetical protein
2194	 55.54	+1	2639211..2641349	+	712	110669170	trsE	HQ3289A	-	transfer complex protein
2195	 54.82	+1	2641346..2642299	+	317	110669171	-	HQ3290A	-	hypothetical protein
2196	 52.25	0	2642296..2644203	+	635	110669172	-	HQ3291A	-	conjugation protein
2197	 42.62	-1	2644502..2645341	+	279	110669173	-	HQ3292A	-	hypothetical protein
2198	 48.77	0	2645342..2645749	+	135	110669174	-	HQ3293A	-	hypothetical protein
2199	 50.34	0	2645754..2646494	-	246	110669175	-	HQ3294A	-	hypothetical protein
2200	 47.98	0	2647199..2648488	-	429	110669176	-	HQ3295A	-	hypothetical protein
2201	 46.35	0	2650476..2651789	+	437	110669177	-	HQ3297A	-	AAA-type ATPase (cell division control protein homolog)
2202	 44.09	-1	2651786..2653096	+	436	110669178	-	HQ3298A	-	hypothetical protein
2203	 44.91	-1	2655401..2656117	-	238	110669179	livF	HQ3299A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
2204	 45.30	0	2656114..2656890	-	258	110669180	livG	HQ3300A	-	ABC-type branched-chain amino acid transport systems, AT-binding protein I
2205	 45.30	0	2656887..2657747	-	286	110669181	livH	HQ3301A	-	ABC-type branched-chain amino acid transport system, permease protein I
2206	 48.12	0	2657749..2658708	-	319	110669182	livM	HQ3302A	-	ABC-type branched-chain amino acid transport system, permease protein II
2207	 50.93	0	2658821..2660167	-	448	110669183	livJ	HQ3303A	-	ABC-type branched-chain amino acid transport systems, substrate-binding protein
2208	 47.34	0	2661852..2662265	-	137	110669184	-	HQ3306A	-	hypothetical protein
2209	 47.05	0	2662918..2663595	-	225	110669185	phoU	HQ3307A	-	ABC transport system regulatory protein
2210	 46.41	0	2663962..2664963	+	333	110669186	phoU	HQ3308A	-	ABC transport system regulatory protein
2211	 45.50	0	2665297..2665674	-	125	110669187	rps8R	HQ3309A	-	30S ribosomal protein S8e
2212	 46.75	0	2665788..2666249	+	153	110669188	-	HQ3310A	-	hypothetical protein
2213	 49.31	0	2666753..2670019	-	1088	110669189	carB	HQ3311A	-	carbamoyl phosphate synthase large subunit
2214	 48.21	0	2670150..2670680	-	176	110669190	-	HQ3312A	-	hypothetical protein
2215	 42.46	-1	2670875..2671126	-	83	110669191	-	HQ3313A	-	hypothetical protein
2216	 45.57	0	2671184..2671510	-	108	110669192	-	HQ3314A	-	hypothetical protein
2217	 46.25	0	2671920..2672399	-	159	110669193	fxsA	HQ3315A	-	FxsA
2218	 49.04	0	2672528..2674246	+	572	110669194	-	HQ3316A	-	hypothetical protein
2219	 46.88	0	2674712..2675641	-	309	110669195	-	HQ3317A	-	GTP cyclohydrolase
2220	 48.98	0	2675836..2676327	-	163	110669196	-	HQ3318A	-	hypothetical protein
2221	 47.23	0	2676676..2677920	-	414	110669197	hcaD	HQ3319A	-	ferredoxin:NAD+ oxidoreductase
2222	 43.68	-1	2678204..2678812	+	202	110669198	-	HQ3320A	-	hypothetical protein
2223	 46.86	0	2679052..2680485	-	477	110669199	hemY	HQ3321A	-	hypothetical protein
2224	 52.95	+1	2680752..2681633	+	293	110669200	thrB	HQ3322A	-	homoserine kinase
2225	 51.05	0	2681986..2682894	-	302	110669201	pyroA	HQ3323A	-	pyridoxine biosynthesis protein
2226	 46.83	0	2683074..2683910	+	278	110669202	-	HQ3324A	-	hypothetical protein
2227	 46.12	0	2684111..2685064	-	317	110669203	-	HQ3325A	-	hypothetical protein
2228	 47.85	0	2685305..2686819	-	504	110669204	panF	HQ3326A	-	sodium/pantothenate symporter
2229	 51.19	0	2686812..2687063	-	83	110669205	-	HQ3327A	-	hypothetical protein
2230	 46.98	0	2687332..2689053	+	573	110669206	dnaG	HQ3328A	-	DNA primase
2231	 44.21	-1	2689456..2690025	-	189	110669207	-	HQ3329A	-	hypothetical protein
2232	 50.00	0	2690022..2691347	-	441	110669208	-	HQ3330A	-	hypothetical protein
2233	 47.13	0	2691487..2692095	+	202	110669209	uppS	HQ3331A	-	di-trans,poly-cis-decaprenylcistransferase
2234	 50.52	0	2692129..2693082	-	317	110669210	uppS	HQ3332A	-	di-trans,poly-cis-decaprenylcistransferase
2235	 42.61	-1	2693294..2693692	+	132	110669211	-	HQ3333A	-	hypothetical protein
2236	 45.99	0	2693829..2694950	+	373	110669212	nirH	HQ3334A	-	heme biosynthesis protein nirH/G (nirL/nirD homolog)
2237	 51.19	0	2695051..2695722	+	223	110669213	cysG	HQ3335A	-	siroheme synthase
2238	 48.79	0	2695719..2697083	+	454	110669214	hemA	HQ3336A	-	glutamyl-tRNA reductase
2239	 48.15	0	2698501..2698635	-	44	110669215	-	HQ3339A	-	hypothetical protein
2240	 45.33	0	2698694..2698843	+	49	110669216	-	HQ3340A	-	IS200-type transposase (nonfunctional,N-terminal part)
2241	 42.75	-1	2699409..2699684	+	91	110669217	phhB	HQ3342A	-	pterin-4-alpha-carbinolamine dehydratase
2242	 47.83	0	2699727..2700464	+	245	110669218	pgp	HQ3343A	-	phosphatase
2243	 50.79	0	2700569..2702458	-	629	110669219	moeA	HQ3344A	-	molybdenum cofactor biosynthesis protein MoeA
2244	 50.37	0	2702455..2703804	-	449	110669220	moeA	HQ3345A	-	molybdenum cofactor biosynthesis protein MoeA
2245	 54.01	+1	2703998..2704384	+	128	110669221	hsp20	HQ3346A	-	hsp20 type chaperone
2246	 46.40	0	2704408..2706075	+	555	110669222	ubiB	HQ3347A	-	ubiquinone biosynthesis transmembrane protein
2247	 46.93	0	2706236..2706610	+	124	110669223	tif5A	HQ3348A	-	translation initiation factor IF-5A
2248	 50.12	0	2706625..2707452	+	275	110669224	speB	HQ3349A	-	agmatinase
2249	 50.50	0	2707844..2708641	-	265	110669225	surE	HQ3350A	-	acid phosphatase
2250	 47.49	0	2708857..2710488	-	543	110669226	-	HQ3351A	-	tyrA operon protein
2251	 50.19	0	2710485..2711255	-	256	110669227	tyrA	HQ3352A	-	prephenate dehydrogenase
2252	 46.78	0	2711454..2712695	-	413	110669228	pepQ	HQ3353A	-	Xaa-Pro aminopeptidase
2253	 47.09	0	2713064..2713492	-	142	110669229	lrp	HQ3354A	-	transcription regulator
2254	 46.86	0	2713574..2714512	-	312	110669230	porB	HQ3355A	-	pyruvate--ferredoxin oxidoreductase, beta subunit
2255	 48.34	0	2714515..2716413	-	632	110669231	porA	HQ3356A	-	pyruvate--ferredoxin oxidoreductase, alpha subunit
2256	 49.65	0	2716917..2718068	-	383	110669232	aroC	HQ3357A	-	chorismate synthase
2257	 49.27	0	2718330..2719628	-	432	110669233	aroA	HQ3358A	-	3-phosphoshikimate 1-carboxyvinyltransferase
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.