IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2092	 46.29	0	2513535..2514599	+	354	110669068	livM	HQ3184A	-	ABC-type branched-chain amino acid transport system, permease protein II
2093	 44.40	-1	2514592..2515386	+	264	110669069	livG	HQ3185A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein I
2094	 44.75	-1	2515389..2516150	+	253	110669070	livF	HQ3186A	-	ABC-type branched-chain amino acid transport systems, ATP_binding protein II
2095	 47.68	0	2516602..2517765	+	387	110669071	fdh	HQ3187A	-	formaldehyde dehydrogenase
2096	 45.91	0	2518003..2518161	+	52	110669072	-	HQ3188A	-	hypothetical protein
2097	 44.87	-1	2518298..2519623	-	441	110669073	cobW	HQ3189A	-	cobalamin synthesis protein/P47K
2098	 42.06	-1	2519825..2520145	+	106	110669074	rpoM2	HQ3190A	-	DNA-directed RNA polymerase subunit M2
2099	 51.20	0	2520309..2521310	-	333	110669075	ghmP	HQ3191A	-	GHMP family kinase
2100	 48.48	0	2521574..2521903	-	109	110669076	-	HQ3192A	-	hypothetical protein
2101	 46.49	0	2521974..2522315	-	113	110669077	-	HQ3193A	-	hypothetical protein
2102	 47.49	0	2522713..2523630	-	305	110669078	guaAb	HQ3194A	-	GMP synthase subunit B
2103	 46.76	0	2523630..2525297	-	555	110669079	pyrG	HQ3195A	-	CTP synthetase
2104	 41.85	-1	2525462..2525731	+	89	110669080	-	HQ3196A	-	hypothetical protein
2105	 47.81	0	2525745..2528438	-	897	110669081	pepC	HQ3197A	-	phosphoenolpyruvate carboxylase
2106	 48.58	0	2528585..2529430	+	281	110669082	petA	HQ3198A	-	menaquinol--cytochrome-c reductase
2107	 48.18	0	2529557..2529913	-	118	110669083	moaD	HQ3199A	-	molybdopterin converting factor, small subunit
2108	 45.66	0	2530042..2531688	-	548	110669084	-	HQ3200A	-	hypothetical protein
2109	 48.10	0	2531746..2532483	-	245	110669085	udp	HQ3201A	-	uridine phosphorylase
2110	 47.63	0	2533498..2534763	+	421	110669086	gfoR	HQ3202A	-	glucose--fructose oxidoreductase
2111	 47.05	0	2534925..2536316	+	463	110669087	aslA	HQ3203A	-	arylsulfatase
2112	 47.41	0	2536324..2537133	-	269	110669088	-	HQ3204A	-	hypothetical protein
2113	 47.12	0	2537409..2538068	+	219	110669089	deoC	HQ3205A	-	deoxyribose-phosphate aldolase
2114	 48.09	0	2538188..2539129	-	313	110669090	-	HQ3206A	-	cation transporter ( substrates zinc/cadmium)
2115	 48.21	0	2539662..2540333	-	223	110669091	hit	HQ3207A	-	histidine triad (HIT) hydrolase ( bis(5'-nucleosyl)-tetraphosphatase (asymmetrical))
2116	 47.70	0	2540337..2541227	-	296	110669092	map	HQ3208A	-	methionine aminopeptidase
2117	 46.81	0	2541360..2542049	+	229	110669093	pphA	HQ3209A	-	serine/threonine protein phosphatase
2118	 47.62	0	2542160..2542684	+	174	110669094	-	HQ3210A	-	hypothetical protein
2119	 47.73	0	2543020..2543658	-	212	110669095	dsbA	HQ3211A	-	thioredoxin; DsbA oxidoreductase
2120	 47.87	0	2543877..2545142	+	421	110669096	icd	HQ3212A	-	isocitrate dehydrogenase (NADP+)
2121	 45.84	0	2545226..2546584	+	452	110669097	-	HQ3213A	-	hypothetical protein
2122	 50.38	0	2546827..2547354	+	175	110669098	-	HQ3214A	-	hypothetical protein
2123	 51.43	0	2547467..2548687	-	406	110669099	hmgR	HQ3215A	-	hydroxymethylglutaryl-CoA reductase (NADPH)
2124	 47.74	0	2549046..2550197	+	383	110669100	nadA	HQ3216A	-	quinolinate synthetase
2125	 52.33	0	2550211..2551752	+	513	110669101	nadB	HQ3217A	-	L-aspartate oxidase, quinolinate synthetase subunit B
2126	 49.52	0	2552718..2553545	+	275	110669102	pyrF	HQ3219A	-	orotidine-5'-phosphate decarboxylase
2127	 49.52	0	2553709..2553918	-	69	110669103	-	HQ3220A	-	hypothetical protein
2128	 49.19	0	2554088..2554333	+	81	110669104	grx	HQ3221A	-	glutaredoxin
2129	 58.05	+2	2555160..2557388	+	742	110669105	-	HQ3223A	-	hypothetical protein
2130	 51.41	0	2557622..2557975	+	117	110669106	-	HQ3224A	-	hypothetical protein
2131	 43.43	-1	2558651..2559145	+	164	110669107	-	HQ3225A	-	hypothetical protein
2132	 47.52	0	2559221..2560672	-	483	110669108	-	HQ3226A	-	hypothetical protein
2133	 45.86	0	2560770..2562182	-	470	110669109	-	HQ3227A	-	transporter
2134	 47.08	0	2562262..2562981	-	239	110669110	apt	HQ3228A	-	adenine phosphoribosyltransferase
2135	 44.63	-1	2563109..2563657	-	182	110669111	pyrE	HQ3229A	-	orotate phosphoribosyltransferase
2136	 51.28	0	2563921..2564466	-	181	110669112	cdsA	HQ3230A	-	hypothetical protein
2137	 46.22	0	2565130..2565750	+	206	110669113	-	HQ3231A	-	hypothetical protein
2138	 55.07	+1	2566013..2566150	+	45	110669114	-	HQ3232A	-	hypothetical protein
2139	 56.44	+1	2566147..2567466	+	439	110669115	-	HQ3233A	-	IS1341-type transposase
2140	 45.59	0	2567612..2568541	-	309	110669116	ilvE	HQ3234A	-	branched-chain amino acid aminotransferase
2141	 46.99	0	2569416..2570147	-	243	110669117	ribB	HQ3235A	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2142	 50.92	0	2570237..2570941	-	234	110669118	-	HQ3236A	-	riboflavin biosynthetic operon protein; transtriptional regulator
2143	 56.01	+1	2571289..2572527	-	412	110669119	-	HQ3237A	-	IS1341-type transposase
2144	 48.06	0	2572533..2572661	-	42	110669120	-	HQ3238A	-	hypothetical protein
2145	 48.24	0	2573538..2575328	+	596	110669121	argS	HQ3239A	-	arginine--tRNA ligase
2146	 46.84	0	2575743..2576993	+	416	110669122	erf1	HQ3241A	-	peptide chain release factor 1
2147	 44.92	-1	2577628..2578326	-	232	110669123	atpD	HQ3242A	-	V-type ATP synthase subunit D
2148	 47.27	0	2578587..2580014	-	475	110669124	atpB	HQ3243A	-	V-type ATP synthase subunit B
2149	 49.03	0	2580016..2581773	-	585	110669125	atpA	HQ3244A	-	V-type ATP synthase subunit A
2150	 49.70	0	2581797..2582126	-	109	110669126	atpF	HQ3245A	-	V-type ATP synthase subunit F
2151	 47.22	0	2582129..2583172	-	347	110669127	atpC	HQ3246A	-	V-type ATP synthase subunit C
2152	 47.42	0	2583169..2583750	-	193	110669128	atpE	HQ3247A	-	V-type ATP synthase subunit E
2153	 55.70	+1	2583772..2584008	-	78	110669129	atpK	HQ3248A	-	H(+)-transporting two-sector ATPase, subunit K (A-type ATP synthase)
2154	 47.71	0	2584217..2586553	-	778	110669130	atpI	HQ3249A	-	H(+)-transporting two-sector ATPase, subunit I (A-type ATP synthase)
2155	 50.15	0	2586540..2586872	-	110	110669131	atpH	HQ3250A	-	H(+)-transporting two-sector ATPase, subunit H (A-type ATP synthase)
2156	 46.23	0	2587083..2587772	+	229	110669132	menG	HQ3251A	-	menaquinone biosynthesis methyltransferase-like protein
2157	 50.00	0	2587858..2588415	-	185	110669133	-	HQ3252A	-	hypothetical protein
2158	 48.34	0	2588594..2589919	-	441	110669134	-	HQ3253A	-	hypothetical protein
2159	 49.40	0	2590046..2591638	+	530	110669135	-	HQ3254A	-	hypothetical protein
2160	 51.84	0	2591750..2592565	+	271	110669136	idsA	HQ3255A	-	multifunctional long-chain (E)-prenyl diphosphate synthase
2161	 50.35	0	2592624..2593763	-	379	110669137	-	HQ3256A	-	hypothetical protein
2162	 47.29	0	2594029..2595024	+	331	110669138	-	HQ3257A	-	hypothetical protein
2163	 46.83	0	2595089..2595844	-	251	110669139	-	HQ3258A	-	hypothetical protein
2164	 48.86	0	2595934..2596416	+	160	110669140	-	HQ3259A	-	hypothetical protein
2165	 48.44	0	2596590..2597198	+	202	110669141	tfx	HQ3260A	-	putative transcriptional regulator
2166	 47.87	0	2597255..2598403	-	382	110669142	manC	HQ3261A	-	mannose-1-phosphate guanylyltransferase
2167	 48.23	0	2598414..2598836	-	140	110669143	-	HQ3262A	-	hypothetical protein
2168	 48.45	0	2599263..2600195	+	310	110669144	-	HQ3263A	-	replication factor A
2169	 47.60	0	2600197..2600820	+	207	110669145	-	HQ3264A	-	hypothetical protein
2170	 44.60	-1	2601133..2601567	+	144	110669146	-	HQ3265A	-	hypothetical protein
2171	 46.27	0	2601914..2602369	-	151	110669147	-	HQ3266A	-	helicase
2172	 50.81	0	2602766..2603875	+	369	110669148	-	HQ3267A	-	putative phage integrase
2173	 57.86	+2	2604114..2604851	-	245	110669149	cdc6_	HQ3268A	-	cell division control protein cdc6-like protein
2174	 52.38	0	2605109..2606137	+	342	110669150	cdc6_	HQ3269A	-	cell division control protein cdc6-like protein
2175	 56.04	+1	2606123..2606536	-	137	110669151	-	HQ3270A	-	calcium binding
2176	 54.37	+1	2607018..2608253	-	411	110669152	int	HQ3271A	-	phage integrase
2177	 55.49	+1	2608586..2610535	-	649	110669153	-	HQ3272A	-	hypothetical protein
2178	 48.04	0	2610658..2611371	+	237	110669154	-	HQ3273A	-	hypothetical protein
2179	 51.46	0	2611501..2616792	-	1763	110669155	-	HQ3274A	-	helicase
2180	 47.04	0	2616845..2620900	-	1351	110669156	-	HQ3275A	-	type II restriction/modification enzyme
2181	 52.71	+1	2620897..2623776	-	959	110669157	hepA	HQ3276A	-	ATP-dependent helicase HepA
2182	 54.09	+1	2623995..2625362	-	455	110669158	-	HQ3277A	-	adenine-specific DNA methyltransferase
2183	 51.18	0	2625428..2626273	-	281	110669159	-	HQ3278A	-	hypothetical protein
2184	 49.56	0	2626426..2626653	-	75	110669160	-	HQ3279A	-	hypothetical protein
2185	 48.56	0	2626854..2629604	-	916	110669161	-	HQ3280A	-	hypothetical protein
2186	 58.12	+2	2630461..2631957	-	498	110669162	-	HQ3281A	-	hypothetical protein
2187	 56.72	+2	2632395..2633450	-	351	110669163	-	HQ3282A	-	hypothetical protein
2188	 52.39	0	2633527..2634612	+	361	110669164	-	HQ3283A	-	hypothetical protein
2189	 54.55	+1	2634886..2635743	-	285	110669165	htpX	HQ3284A	-	protease HtpX
2190	 53.12	+1	2636491..2636970	-	159	110669166	-	HQ3285A	-	hypothetical protein
2191	 56.06	+1	2637051..2637578	-	175	110669167	-	HQ3286A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.