IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.79   STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1973	 56.94	+2	2368672..2369946	+	424	110668949	-	HQ3062A	-	IS1341-type transposase
1974	 45.08	0	2370610..2371137	+	175	110668950	lrp	HQ3063A	-	transcription regulator
1975	 46.76	0	2371913..2372791	-	292	110668951	hop	HQ3064A	-	halorhodopsin
1976	 46.97	0	2373114..2375174	-	686	110668952	-	HQ3065A	-	superfamily II helicase
1977	 46.65	0	2375341..2376519	+	392	110668953	-	HQ3066A	-	metalloprotease
1978	 50.00	0	2376700..2377359	-	219	110668954	-	HQ3067A	-	hypothetical protein
1979	 48.83	0	2377585..2378862	+	425	110668955	-	HQ3068A	-	hypothetical protein
1980	 49.45	0	2379046..2379411	-	121	110668956	-	HQ3069A	-	hypothetical protein
1981	 47.39	0	2379509..2381464	+	651	110668957	-	HQ3070A	-	ATPase
1982	 43.10	-1	2381672..2382019	+	115	110668958	-	HQ3071A	-	hypothetical protein
1983	 46.78	0	2382915..2385971	+	1018	110668959	uvrA	HQ3072A	-	excinuclease ABC chain A
1984	 54.07	+1	2386114..2386494	+	126	110668960	-	HQ3073A	-	hypothetical protein
1985	 48.04	0	2388356..2390218	-	620	110668961	tif5B	HQ3074A	-	translation initiation factor IF-2
1986	 47.97	0	2390359..2390604	+	81	110668962	-	HQ3075A	-	hypothetical protein
1987	 49.89	0	2390625..2391083	+	152	110668963	-	HQ3076A	-	hypothetical protein
1988	 53.65	+1	2391511..2392824	+	437	110668964	-	HQ3077A	-	IS1341-type transposase
1989	 44.67	-1	2393247..2393996	-	249	110668965	-	HQ3078A	-	hypothetical protein
1990	 42.86	-1	2394260..2394595	-	111	110668966	-	HQ3079A	-	azlC associated membrane protein
1991	 48.57	0	2394595..2395329	-	244	110668967	azlC	HQ3080A	-	branched-chain amino acids ABC transporter permease,azaleucine resistance protein
1992	 43.69	-1	2396907..2397215	-	102	110668968	-	HQ3082A	-	hypothetical protein
1993	 48.41	0	2397253..2398068	-	271	110668969	-	HQ3083A	-	hypothetical protein
1994	 46.88	0	2398824..2399384	-	186	110668970	nudF	HQ3084A	-	ADP-ribose pyrophosphatase; Mut/nudix family protein
1995	 47.39	0	2400234..2401556	-	440	110668971	-	HQ3085A	-	hypothetical protein
1996	 45.52	0	2401653..2402054	-	133	110668972	gloA	HQ3086A	-	lactoylglutathione lyase
1997	 47.80	0	2402784..2403896	+	370	110668973	-	HQ3087A	-	hypothetical protein
1998	 50.00	0	2403985..2404530	-	181	110668974	-	HQ3088A	-	hypothetical protein
1999	 46.49	0	2404532..2405101	-	189	110668975	-	HQ3089A	-	hypothetical protein
2000	 50.05	0	2405312..2406346	-	344	110668976	-	HQ3090A	-	hypothetical protein
2001	 48.37	0	2406387..2407304	-	305	110668977	sppA	HQ3091A	-	protease IV; endopeptidase IV; signal peptide peptidase
2002	 42.12	-1	2407530..2408303	-	257	110668978	-	HQ3092A	-	ABC-type transport system, permease protein
2003	 47.74	0	2408306..2409256	-	316	110668979	-	HQ3093A	-	ABC-type transport system, ATP-binding protein
2004	 46.28	0	2409648..2410682	+	344	110668980	aceA	HQ3094A	-	isocitrate lyase
2005	 48.28	0	2411282..2412619	+	445	110668981	-	HQ3095A	-	hypothetical protein
2006	 49.57	0	2412791..2413486	+	231	110668982	rnhB	HQ3096A	-	ribonuclease HII
2007	 49.26	0	2413785..2415347	-	520	110668983	secD	HQ3097A	-	preprotein translocase subunit SecD
2008	 45.78	0	2415344..2416219	-	291	110668984	secF	HQ3098A	-	preprotein translocase subunit SecF
2009	 48.37	0	2416791..2417282	-	163	110668985	-	HQ3099A	-	hypothetical protein
2010	 48.89	0	2417457..2417996	-	179	110668986	-	HQ3100A	-	hypothetical protein
2011	 50.27	0	2418532..2419824	+	430	110668987	pgi	HQ3101A	-	glucose-6-phosphate isomerase
2012	 47.32	0	2419958..2421823	+	621	110668988	kefC	HQ3102A	-	potassium transport protein kefC
2013	 45.05	0	2421858..2422241	-	127	110668989	-	HQ3103A	-	hypothetical protein
2014	 48.78	0	2422751..2424226	+	491	110668990	-	HQ3104A	-	AAA-type ATPase
2015	 46.91	0	2424238..2425062	+	274	110668991	phnP	HQ3105A	-	PhnP-like protein
2016	 48.57	0	2425077..2425949	-	290	110668992	-	HQ3106A	-	hypothetical protein
2017	 47.99	0	2426341..2426763	-	140	110668993	nifUx	HQ3107A	-	NifU domain-containing protein
2018	 50.05	0	2426852..2427820	-	322	110668994	glcK	HQ3108A	-	glucokinase
2019	 47.24	0	2428096..2428476	-	126	110668995	-	HQ3109A	-	hypothetical protein
2020	 47.06	0	2428768..2429772	-	334	110668996	-	HQ3110A	-	hypothetical protein
2021	 49.33	0	2429977..2430276	+	99	110668997	-	HQ3111A	-	hypothetical protein
2022	 48.84	0	2430418..2431539	+	373	110668998	gcvT	HQ3112A	-	aminomethyltransferase, glycin cleavage system T protein
2023	 52.35	0	2432270..2433352	-	360	110668999	-	HQ3113A	-	electron-transferring-flavoprotein dehydrogenase / geranylgeranyl hydrogenase-like protein
2024	 47.73	0	2433415..2433921	-	168	110669000	pdaD	HQ3114A	-	pyruvoyl-dependent arginine decarboxylase
2025	 47.45	0	2434049..2435281	-	410	110669001	pan1	HQ3115A	-	proteasome-activating nucleotidase
2026	 49.37	0	2435356..2435829	-	157	110669002	dcd	HQ3116A	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
2027	 48.71	0	2436360..2438336	+	658	110669003	citB	HQ3117A	-	aconitate hydratase
2028	 47.56	0	2438406..2438897	+	163	110669004	rimI	HQ3118A	-	protein N-acetyltransferase
2029	 48.74	0	2439233..2440342	+	369	110669005	-	HQ3119A	-	NAD/FAD-dependent oxidoreductase
2030	 51.09	0	2440407..2441183	+	258	110669006	-	HQ3120A	-	hypothetical protein
2031	 46.22	0	2442501..2443571	-	356	110669007	nirD	HQ3121A	-	heme biosynthesis protein nirD/L (nirH/nirG homolog)
2032	 47.31	0	2444441..2445520	+	359	110669008	trpD	HQ3122A	-	anthranilate phosphoribosyltransferase
2033	 46.67	0	2445734..2446273	+	179	110669009	ppiA	HQ3123A	-	peptidylprolyl isomerase
2034	 47.40	0	2446361..2446744	+	127	110669010	-	HQ3124A	-	hypothetical protein
2035	 49.28	0	2447363..2448541	+	392	110669011	cofG	HQ3125A	-	FO synthase subunit 1
2036	 49.54	0	2448582..2449130	-	182	110669012	-	HQ3126A	-	hypothetical protein
2037	 47.35	0	2449342..2450754	-	470	110669013	thiH	HQ3127A	-	FO synthase subunit 2
2038	 46.20	0	2451791..2452870	+	359	110669014	purC	HQ3128A	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2039	 45.63	0	2453438..2454421	-	327	110669015	purU	HQ3129A	-	formyltetrahydrofolate deformylase
2040	 51.81	0	2454695..2454970	+	91	110669016	purS	HQ3130A	-	phosphoribosylformylglycinamidine synthase, PurS component
2041	 49.64	0	2454967..2455653	+	228	110669017	purQ	HQ3131A	-	phosphoribosylformylglycinamidine synthase component I
2042	 45.89	0	2455817..2456047	-	76	110669018	-	HQ3132A	-	hypothetical protein
2043	 42.69	-1	2456685..2456855	-	56	110669019	-	HQ3134A	-	hypothetical protein
2044	 49.59	0	2457222..2458439	+	405	110669020	-	HQ3135A	-	cell surface protein/ lipoprotein-putative microfilarial sheath protein
2045	 60.32	+2	2459882..2459944	-	20	110669021	-	HQ3136E	-	IS1341-type transposase (nonfunctional,N-terminal part)
2046	 47.28	0	2460134..2461051	-	305	110669022	-	HQ3137A	-	hydrolase ( hydroxyacylglutathione hydrolase)
2047	 47.72	0	2461328..2462710	+	460	110669023	serS	HQ3138A	-	seryl-tRNA synthetase
2048	 47.93	0	2462840..2463394	+	184	110669024	-	HQ3139A	-	hypothetical protein
2049	 47.59	0	2463699..2464673	+	324	110669025	-	HQ3140A	-	GTP-binding protein
2050	 49.93	0	2465137..2466546	-	469	110669026	-	HQ3141A	-	hypothetical protein
2051	 47.65	0	2466960..2467469	-	169	110669027	-	HQ3142A	-	hypothetical protein
2052	 46.78	0	2467575..2468258	-	227	110669028	trkA	HQ3143A	-	TrkA domain-containing protein
2053	 42.77	-1	2469001..2469318	+	105	110669029	-	HQ3144A	-	hypothetical protein
2054	 47.04	0	2469332..2469973	-	213	110669030	tdk	HQ3145A	-	thymidylate kinase
2055	 48.16	0	2470165..2471088	+	307	110669031	nolA	HQ3146A	-	NADH dehydrogenase 32K chain
2056	 46.56	0	2471510..2472688	+	392	110669032	ftsZ	HQ3147A	-	cell division protein ftsZ
2057	 47.74	0	2472700..2473497	+	265	110669033	-	HQ3148A	-	hypothetical protein
2058	 46.27	0	2473598..2474548	+	316	110669034	-	HQ3149A	-	hypothetical protein
2059	 44.93	-1	2474833..2475453	+	206	110669035	engB	HQ3150A	-	GTP-binding protein
2060	 45.87	0	2475446..2476051	-	201	110669036	-	HQ3151A	-	hypothetical protein
2061	 45.83	0	2476302..2476637	-	111	110669037	-	HQ3152A	-	homolog to thiosulfate sulfurtransferase
2062	 51.01	0	2477056..2477796	+	246	110669038	cofE	HQ3153A	-	F420-0--gamma-glutamyl ligase
2063	 50.65	0	2477789..2478793	+	334	110669039	mer	HQ3154A	-	methylenetetrahydromethanopterin reductase
2064	 50.72	0	2478863..2479138	-	91	110669040	-	HQ3155A	-	hypothetical protein
2065	 48.35	0	2479315..2479707	+	130	110669041	-	HQ3156A	-	hypothetical protein
2066	 48.82	0	2479832..2481613	-	593	110669042	mutL	HQ3157A	-	DNA mismatch repair protein MutL
2067	 47.73	0	2481606..2484404	-	932	110669043	mutS2	HQ3158A	-	DNA mismatch repair protein
2068	 48.22	0	2484842..2485855	+	337	110669044	moxR	HQ3159A	-	MoxR-like ATPase
2069	 48.64	0	2486157..2487293	+	378	110669045	-	HQ3160A	-	hypothetical protein
2070	 49.60	0	2487290..2489692	+	800	110669046	-	HQ3161A	-	hypothetical protein
2071	 46.13	0	2489943..2490239	+	98	110669047	tif1	HQ3162A	-	translation initiation factor Sui1
2072	 48.05	0	2490522..2491085	-	187	110669048	nudF	HQ3163A	-	ADP-ribose pyrophosphatase; Mut/nudix family protein
48.79	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.