IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1899	 50.00	0	2285002..2285991	+	329	110668875	galE	HQ2986A	-	nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
1900	 47.90	0	2286045..2286902	-	285	110668876	-	HQ2987A	-	transcriptional regulator
1901	 50.33	0	2287560..2288759	+	399	110668877	graD	HQ2989A	-	glucose-1-phosphate thymidylyltransferase
1902	 51.62	0	2288759..2290579	+	606	110668878	glmS	HQ2990A	-	glutamine--fructose-6-phosphate transaminase (isomerizing)
1903	 52.00	0	2290892..2291968	+	358	110668879	-	HQ2991A	-	hypothetical protein
1904	 51.24	0	2292439..2293650	+	403	110668880	graD	HQ2992A	-	glucose-1-phosphate thymidylyltransferase
1905	 45.27	0	2293711..2293953	-	80	110668881	-	HQ2993A	-	hypothetical protein
1906	 52.16	0	2294438..2296285	-	615	110668882	sdhA	HQ2994A	-	succinate dehydrogenase, subunit A (flavoprotein)
1907	 46.96	0	2296342..2297214	-	290	110668883	sdhB	HQ2995A	-	succinate dehydrogenase, subunit B (iron-sulfur protein)
1908	 52.15	0	2297381..2297752	-	123	110668884	sdhD	HQ2996A	-	succinate dehydrogenase, subunit D (membrane anchor protein)
1909	 51.01	0	2297752..2298147	-	131	110668885	sdhC	HQ2997A	-	succinate dehydrogenase, subunit C (cytochrome b-556)
1910	 47.14	0	2298460..2298843	-	127	110668886	-	HQ2998A	-	hypothetical protein
1911	 47.89	0	2299285..2299758	+	157	110668887	-	HQ2999A	-	hypothetical protein
1912	 48.46	0	2300501..2302516	-	671	110668888	spoVR	HQ3000A	-	spore cortext formation protein
1913	 49.52	0	2302744..2304084	-	446	110668889	-	HQ3001A	-	hypothetical protein
1914	 49.85	0	2304075..2306351	-	758	110668890	prkA	HQ3002A	-	serine protein kinase
1915	 47.97	0	2306695..2308764	-	689	110668891	prkA	HQ3003A	-	serine protein kinase
1916	 48.37	0	2309135..2309593	+	152	110668892	-	HQ3004A	-	hypothetical protein
1917	 49.57	0	2309689..2310507	-	272	110668893	-	HQ3005A	-	succinylglutamate desuccinylase-like protein
1918	 46.87	0	2310848..2311342	+	164	110668894	-	HQ3006A	-	hypothetical protein
1919	 48.77	0	2311546..2313003	+	485	110668895	-	HQ3007A	-	beta,beta-carotene 9',10'-dioxygenase 2
1920	 47.78	0	2313047..2313226	-	59	110668896	-	HQ3008A	-	hypothetical protein
1921	 50.68	0	2313260..2313703	-	147	110668897	-	HQ3009A	-	hypothetical protein
1922	 50.10	0	2314177..2315190	-	337	110668898	guaD	HQ3010A	-	nucleoside deaminase (cytosine deaminase, guanine deaminase)
1923	 49.35	0	2315382..2316617	-	411	110668899	-	HQ3011A	-	hypothetical protein
1924	 48.49	0	2316848..2317909	+	353	110668900	-	HQ3012A	-	LPPG:FO 2-phospho-L-lactate transferase
1925	 50.32	0	2317909..2318685	+	258	110668901	-	HQ3013A	-	tRNA-dihydrouridine synthase
1926	 53.15	+1	2318744..2319601	+	285	110668902	citG	HQ3014A	-	triphosphoribosyl-dephospho-CoA synthase
1927	 50.80	0	2319607..2320356	+	249	110668903	-	HQ3015A	-	hypothetical protein
1928	 46.08	0	2320407..2320610	+	67	110668904	rps17E	HQ3016A	-	30S ribosomal protein S17e
1929	 53.54	+1	2320921..2321217	-	98	110668905	-	HQ3017A	-	acc operon protein
1930	 47.00	0	2321223..2322773	-	516	110668906	accA	HQ3018A	-	acetyl-CoA carboxylase alpha subunit
1931	 41.78	-1	2323010..2323222	+	70	110668907	-	HQ3019A	-	hypothetical protein
1932	 52.26	0	2323415..2323900	+	161	110668908	bcp	HQ3020A	-	peroxiredoxin homolog, bacterioferritin comigrating protein
1933	 50.64	0	2324280..2326070	-	596	110668909	ilvD	HQ3021A	-	dihydroxy-acid dehydratase
1934	 49.33	0	2326145..2326819	-	224	110668910	moaB	HQ3022A	-	molybdenum cofactor biosynthesis protein B
1935	 46.19	0	2326904..2327914	-	336	110668911	-	HQ3023A	-	hypothetical protein
1936	 48.41	0	2328035..2329075	+	346	110668912	qor	HQ3024A	-	NADPH:quinone reductase
1937	 47.39	0	2329065..2329313	+	82	110668913	-	HQ3025A	-	hypothetical protein
1938	 46.44	0	2329537..2329887	+	116	110668914	-	HQ3026A	-	hypothetical protein
1939	 49.56	0	2330115..2331032	+	305	110668915	-	HQ3027A	-	hypothetical protein
1940	 50.96	0	2331246..2332856	-	536	110668916	-	HQ3028A	-	hypothetical protein
1941	 48.50	0	2333051..2333881	-	276	110668917	pspA	HQ3029A	-	stress response protein
1942	 45.68	0	2333935..2334582	+	215	110668918	-	HQ3030A	-	hypothetical protein
1943	 50.54	0	2334780..2335151	-	123	110668919	-	HQ3031A	-	cobalamin operon protein
1944	 49.96	0	2335166..2336422	-	418	110668920	cbiX	HQ3032A	-	cobalamin cluster protein CbiX ( ferredoxin-like iron-sulfur protein)
1945	 49.68	0	2336415..2337197	-	260	110668921	-	HQ3032B	-	cobalamin operon protein
1946	 48.97	0	2337357..2338424	-	355	110668922	cbiH2	HQ3033A	-	precorrin-3B C17-methyltransferase 2
1947	 50.17	0	2338458..2339318	-	286	110668923	cbiH1	HQ3034A	-	precorrin-3B C17-methyltransferase 1
1948	 51.08	0	2339315..2340283	-	322	110668924	cbiG	HQ3035A	-	cobalamin biosynthesis protein G, CbiG
1949	 54.18	+1	2340428..2341276	-	282	110668925	asnA	HQ3036A	-	asparaginase
1950	 49.61	0	2341452..2343116	-	554	110668926	-	HQ3037A	-	hypothetical protein
1951	 47.35	0	2343363..2343683	-	106	110668927	-	HQ3038A	-	hypothetical protein
1952	 47.41	0	2343807..2344211	+	134	110668928	-	HQ3039A	-	stress response protein
1953	 45.26	0	2344279..2345418	-	379	110668929	-	HQ3040A	-	hypothetical protein
1954	 45.11	0	2345573..2345920	-	115	110668930	-	HQ3041A	-	hypothetical protein
1955	 45.96	0	2346193..2346699	+	168	110668931	mobB	HQ3042A	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1956	 47.75	0	2346928..2347794	-	288	110668932	-	HQ3043A	-	hypothetical protein
1957	 48.33	0	2347918..2348997	+	359	110668933	-	HQ3044A	-	transporter of the drug/metabolite transporter (DMT) superfamily
1958	 49.82	0	2349200..2350291	+	363	110668934	-	HQ3045A	-	hypothetical protein
1959	 43.88	-1	2350378..2350794	-	138	110668935	-	HQ3046A	-	coaE operon protein
1960	 46.46	0	2350858..2351451	-	197	110668936	coaE	HQ3047A	-	dephospho-CoA kinase
1961	 49.53	0	2353451..2355142	-	563	110668937	thsA	HQ3049A	-	thermosome, alpha subunit
1962	 46.95	0	2355340..2356125	+	261	110668938	-	HQ3050A	-	hypothetical protein
1963	 50.46	0	2356274..2356816	-	180	110668939	-	HQ3051A	-	putative RNA-processing protein
1964	 45.59	0	2358200..2358607	-	135	110668940	crcB	HQ3052A	-	protein crcB-like protein
1965	 47.95	0	2358604..2358945	-	113	110668941	crcB	HQ3053A	-	protein crcB-like protein
1966	 49.95	0	2359131..2360189	-	352	110668942	-	HQ3054A	-	hypothetical protein
1967	 47.24	0	2360265..2360717	+	150	110668943	-	HQ3055A	-	hypothetical protein
1968	 48.52	0	2361243..2362631	-	462	110668944	-	HQ3056A	-	hypothetical protein
1969	 49.59	0	2363076..2364053	+	325	110668945	-	HQ3058A	-	hypothetical protein
1970	 45.24	0	2364142..2364393	-	83	110668946	grx	HQ3059A	-	glutaredoxin
1971	 57.78	+2	2365450..2366619	-	389	110668947	-	HQ3060A	-	serine/threonine protein kinase related protein
1972	 47.85	0	2367096..2367653	-	185	110668948	-	HQ3061A	-	hypothetical protein
1973	 56.94	+2	2368672..2369946	+	424	110668949	-	HQ3062A	-	IS1341-type transposase
1974	 45.08	0	2370610..2371137	+	175	110668950	lrp	HQ3063A	-	transcription regulator
1975	 46.76	0	2371913..2372791	-	292	110668951	hop	HQ3064A	-	halorhodopsin
1976	 46.97	0	2373114..2375174	-	686	110668952	-	HQ3065A	-	superfamily II helicase
1977	 46.65	0	2375341..2376519	+	392	110668953	-	HQ3066A	-	metalloprotease
1978	 50.00	0	2376700..2377359	-	219	110668954	-	HQ3067A	-	hypothetical protein
1979	 48.83	0	2377585..2378862	+	425	110668955	-	HQ3068A	-	hypothetical protein
1980	 49.45	0	2379046..2379411	-	121	110668956	-	HQ3069A	-	hypothetical protein
1981	 47.39	0	2379509..2381464	+	651	110668957	-	HQ3070A	-	ATPase
1982	 43.10	-1	2381672..2382019	+	115	110668958	-	HQ3071A	-	hypothetical protein
1983	 46.78	0	2382915..2385971	+	1018	110668959	uvrA	HQ3072A	-	excinuclease ABC chain A
1984	 54.07	+1	2386114..2386494	+	126	110668960	-	HQ3073A	-	hypothetical protein
1985	 48.04	0	2388356..2390218	-	620	110668961	tif5B	HQ3074A	-	translation initiation factor IF-2
1986	 47.97	0	2390359..2390604	+	81	110668962	-	HQ3075A	-	hypothetical protein
1987	 49.89	0	2390625..2391083	+	152	110668963	-	HQ3076A	-	hypothetical protein
1988	 53.65	+1	2391511..2392824	+	437	110668964	-	HQ3077A	-	IS1341-type transposase
1989	 44.67	-1	2393247..2393996	-	249	110668965	-	HQ3078A	-	hypothetical protein
1990	 42.86	-1	2394260..2394595	-	111	110668966	-	HQ3079A	-	azlC associated membrane protein
1991	 48.57	0	2394595..2395329	-	244	110668967	azlC	HQ3080A	-	branched-chain amino acids ABC transporter permease,azaleucine resistance protein
1992	 43.69	-1	2396907..2397215	-	102	110668968	-	HQ3082A	-	hypothetical protein
1993	 48.41	0	2397253..2398068	-	271	110668969	-	HQ3083A	-	hypothetical protein
1994	 46.88	0	2398824..2399384	-	186	110668970	nudF	HQ3084A	-	ADP-ribose pyrophosphatase; Mut/nudix family protein
1995	 47.39	0	2400234..2401556	-	440	110668971	-	HQ3085A	-	hypothetical protein
1996	 45.52	0	2401653..2402054	-	133	110668972	gloA	HQ3086A	-	lactoylglutathione lyase
1997	 47.80	0	2402784..2403896	+	370	110668973	-	HQ3087A	-	hypothetical protein
1998	 50.00	0	2403985..2404530	-	181	110668974	-	HQ3088A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.