IslandPathversion 1.0

IslandPath Analysis: Haloquadratum walsbyi DSM 16790



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.79 STD DEV: 3.84
Haloquadratum walsbyi DSM 16790, complete genome - 1..3132494
2610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1857	 49.57	0	2240406..2240756	-	116	110668833	rpl18R	HQ2940A	-	50S ribosomal protein L18e
1858	 50.06	0	2241206..2241994	-	262	110668834	rpoD	HQ2941A	-	DNA-directed RNA polymerase subunit D
1859	 51.26	0	2242001..2242396	-	131	110668835	rps11p	HQ2942A	-	30S ribosomal protein S11P
1860	 51.52	0	2242403..2242930	-	175	110668836	rps4p	HQ2943A	-	30S ribosomal protein S4
1861	 51.72	0	2242946..2243467	-	173	110668837	rps13p	HQ2944A	-	30S ribosomal protein S13P
1862	 49.83	0	2244015..2246123	+	702	110668838	stt3	HQ2945A	-	transmembrane oligosaccharyl transferase
1863	 46.77	0	2246301..2246501	+	66	110668839	-	HQ2946A	-	hypothetical protein
1864	 48.37	0	2246553..2247257	-	234	110668840	guaA	HQ2947A	-	guanosine monophosphate synthetase (glutamine-hydrolyzing) (GMP synthase)
1865	 49.69	0	2247532..2248503	-	323	110668841	moaA	HQ2948A	-	molybdenum cofactor biosynthesis protein A
1866	 51.01	0	2248648..2249688	+	346	110668842	mrp	HQ2949A	-	ATP-binding protein Mrp
1867	 60.26	+2	2250432..2250962	-	176	110668843	-	HQ2950A	-	hypothetical protein
1868	 56.23	+1	2251084..2251380	-	98	110668844	-	HQ2951A	-	hypothetical protein
1869	 52.28	0	2252574..2253122	+	182	110668845	cdc6_	HQ2952A	-	cell division control protein
1870	 52.82	+1	2253141..2253530	+	129	110668846	-	HQ2953A	-	cell division control protein cdc6-like protein
1871	 53.59	+1	2253892..2255130	+	412	110668847	-	HQ2954A	-	IS1341-type transposase
1872	 46.88	0	2255181..2255468	+	95	110668848	-	HQ2955A	-	cell division control protein cdc6-like protein
1873	 54.11	+1	2256429..2257049	+	206	110668849	-	HQ2956A	-	hypothetical protein
1874	 52.71	+1	2257354..2257611	+	85	110668850	-	HQ2957A	-	hypothetical protein
1875	 53.68	+1	2257657..2258064	+	135	110668851	-	HQ2958A	-	hypothetical protein
1876	 46.85	0	2258609..2259895	-	428	110668852	cdc6_	HQ2959A	-	cell division control protein cdc6-like protein
1877	 42.86	-1	2260719..2260970	-	83	110668853	-	HQ2960A	-	hypothetical protein
1878	 46.75	0	2261949..2262455	-	168	110668854	-	HQ2961A	-	protein N-acetyltransferase-like protein
1879	 48.51	0	2262733..2263839	+	368	110668855	livH	HQ2962A	-	ABC-type branched-chain amino acid transport system, permease protein I
1880	 48.54	0	2263836..2265269	+	477	110668856	livM	HQ2963A	-	ABC-type branched-chain amino acid transport system, permease protein II
1881	 51.10	0	2265262..2266122	+	286	110668857	livG	HQ2964A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein I
1882	 48.10	0	2266119..2266958	+	279	110668858	livF	HQ2965A	-	ABC-type branched-chain amino acid transport systems, ATP-binding protein II
1883	 51.52	0	2267538..2268296	-	252	110668859	-	HQ2966A	-	hypothetical protein
1884	 48.27	0	2268396..2269031	-	211	110668860	-	HQ2967A	-	hypothetical protein
1885	 48.37	0	2269232..2269384	+	50	110668861	-	HQ2968A	-	hypothetical protein
1886	 52.94	+1	2269647..2271023	-	458	110668862	livJ	HQ2969A	-	ABC-type branched-chain amino acid transport systems, substrate-binding protein
1887	 56.86	+2	2271344..2271649	-	101	110668863	-	HQ2971A	-	hypothetical protein
1888	 51.23	0	2272940..2273263	-	107	110668864	-	HQ2973A	-	hypothetical protein
1889	 48.99	0	2273668..2274753	+	361	110668865	-	HQ2974A	-	metal-dependent hydrolase of the TIM-barrel fold
1890	 52.47	0	2274759..2275547	+	262	110668866	-	HQ2975A	-	hypothetical protein
1891	 49.71	0	2276142..2276312	-	56	110668867	-	HQ2976A	-	hypothetical protein
1892	 51.47	0	2277617..2277820	-	67	110668868	-	HQ2977A	-	hypothetical protein
1893	 55.76	+1	2277866..2278186	-	106	110668869	-	HQ2978A	-	hypothetical protein
1894	 58.33	+2	2279551..2280054	-	167	110668870	-	HQ2980A	-	hypothetical protein
1895	 60.78	+2	2281451..2281705	-	84	110668871	-	HQ2982A	-	hypothetical protein
1896	 58.97	+2	2281983..2282216	-	77	110668872	-	HQ2983A	-	hypothetical protein
1897	 49.29	0	2282820..2284010	+	396	110668873	sqdB	HQ2984A	-	UDP-sulfoquinovose synthase
1898	 48.65	0	2284007..2285005	+	332	110668874	galE	HQ2985A	-	nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
1899	 50.00	0	2285002..2285991	+	329	110668875	galE	HQ2986A	-	nucleoside-diphosphate-sugar epimerase ( UDP-glucose 4-epimerase)
1900	 47.90	0	2286045..2286902	-	285	110668876	-	HQ2987A	-	transcriptional regulator
1901	 50.33	0	2287560..2288759	+	399	110668877	graD	HQ2989A	-	glucose-1-phosphate thymidylyltransferase
1902	 51.62	0	2288759..2290579	+	606	110668878	glmS	HQ2990A	-	glutamine--fructose-6-phosphate transaminase (isomerizing)
1903	 52.00	0	2290892..2291968	+	358	110668879	-	HQ2991A	-	hypothetical protein
1904	 51.24	0	2292439..2293650	+	403	110668880	graD	HQ2992A	-	glucose-1-phosphate thymidylyltransferase
1905	 45.27	0	2293711..2293953	-	80	110668881	-	HQ2993A	-	hypothetical protein
1906	 52.16	0	2294438..2296285	-	615	110668882	sdhA	HQ2994A	-	succinate dehydrogenase, subunit A (flavoprotein)
1907	 46.96	0	2296342..2297214	-	290	110668883	sdhB	HQ2995A	-	succinate dehydrogenase, subunit B (iron-sulfur protein)
1908	 52.15	0	2297381..2297752	-	123	110668884	sdhD	HQ2996A	-	succinate dehydrogenase, subunit D (membrane anchor protein)
1909	 51.01	0	2297752..2298147	-	131	110668885	sdhC	HQ2997A	-	succinate dehydrogenase, subunit C (cytochrome b-556)
1910	 47.14	0	2298460..2298843	-	127	110668886	-	HQ2998A	-	hypothetical protein
1911	 47.89	0	2299285..2299758	+	157	110668887	-	HQ2999A	-	hypothetical protein
1912	 48.46	0	2300501..2302516	-	671	110668888	spoVR	HQ3000A	-	spore cortext formation protein
1913	 49.52	0	2302744..2304084	-	446	110668889	-	HQ3001A	-	hypothetical protein
1914	 49.85	0	2304075..2306351	-	758	110668890	prkA	HQ3002A	-	serine protein kinase
1915	 47.97	0	2306695..2308764	-	689	110668891	prkA	HQ3003A	-	serine protein kinase
1916	 48.37	0	2309135..2309593	+	152	110668892	-	HQ3004A	-	hypothetical protein
1917	 49.57	0	2309689..2310507	-	272	110668893	-	HQ3005A	-	succinylglutamate desuccinylase-like protein
1918	 46.87	0	2310848..2311342	+	164	110668894	-	HQ3006A	-	hypothetical protein
1919	 48.77	0	2311546..2313003	+	485	110668895	-	HQ3007A	-	beta,beta-carotene 9',10'-dioxygenase 2
1920	 47.78	0	2313047..2313226	-	59	110668896	-	HQ3008A	-	hypothetical protein
1921	 50.68	0	2313260..2313703	-	147	110668897	-	HQ3009A	-	hypothetical protein
1922	 50.10	0	2314177..2315190	-	337	110668898	guaD	HQ3010A	-	nucleoside deaminase (cytosine deaminase, guanine deaminase)
1923	 49.35	0	2315382..2316617	-	411	110668899	-	HQ3011A	-	hypothetical protein
1924	 48.49	0	2316848..2317909	+	353	110668900	-	HQ3012A	-	LPPG:FO 2-phospho-L-lactate transferase
1925	 50.32	0	2317909..2318685	+	258	110668901	-	HQ3013A	-	tRNA-dihydrouridine synthase
1926	 53.15	+1	2318744..2319601	+	285	110668902	citG	HQ3014A	-	triphosphoribosyl-dephospho-CoA synthase
1927	 50.80	0	2319607..2320356	+	249	110668903	-	HQ3015A	-	hypothetical protein
1928	 46.08	0	2320407..2320610	+	67	110668904	rps17E	HQ3016A	-	30S ribosomal protein S17e
1929	 53.54	+1	2320921..2321217	-	98	110668905	-	HQ3017A	-	acc operon protein
1930	 47.00	0	2321223..2322773	-	516	110668906	accA	HQ3018A	-	acetyl-CoA carboxylase alpha subunit
1931	 41.78	-1	2323010..2323222	+	70	110668907	-	HQ3019A	-	hypothetical protein
1932	 52.26	0	2323415..2323900	+	161	110668908	bcp	HQ3020A	-	peroxiredoxin homolog, bacterioferritin comigrating protein
1933	 50.64	0	2324280..2326070	-	596	110668909	ilvD	HQ3021A	-	dihydroxy-acid dehydratase
1934	 49.33	0	2326145..2326819	-	224	110668910	moaB	HQ3022A	-	molybdenum cofactor biosynthesis protein B
1935	 46.19	0	2326904..2327914	-	336	110668911	-	HQ3023A	-	hypothetical protein
1936	 48.41	0	2328035..2329075	+	346	110668912	qor	HQ3024A	-	NADPH:quinone reductase
1937	 47.39	0	2329065..2329313	+	82	110668913	-	HQ3025A	-	hypothetical protein
1938	 46.44	0	2329537..2329887	+	116	110668914	-	HQ3026A	-	hypothetical protein
1939	 49.56	0	2330115..2331032	+	305	110668915	-	HQ3027A	-	hypothetical protein
1940	 50.96	0	2331246..2332856	-	536	110668916	-	HQ3028A	-	hypothetical protein
1941	 48.50	0	2333051..2333881	-	276	110668917	pspA	HQ3029A	-	stress response protein
1942	 45.68	0	2333935..2334582	+	215	110668918	-	HQ3030A	-	hypothetical protein
1943	 50.54	0	2334780..2335151	-	123	110668919	-	HQ3031A	-	cobalamin operon protein
1944	 49.96	0	2335166..2336422	-	418	110668920	cbiX	HQ3032A	-	cobalamin cluster protein CbiX ( ferredoxin-like iron-sulfur protein)
1945	 49.68	0	2336415..2337197	-	260	110668921	-	HQ3032B	-	cobalamin operon protein
1946	 48.97	0	2337357..2338424	-	355	110668922	cbiH2	HQ3033A	-	precorrin-3B C17-methyltransferase 2
1947	 50.17	0	2338458..2339318	-	286	110668923	cbiH1	HQ3034A	-	precorrin-3B C17-methyltransferase 1
1948	 51.08	0	2339315..2340283	-	322	110668924	cbiG	HQ3035A	-	cobalamin biosynthesis protein G, CbiG
1949	 54.18	+1	2340428..2341276	-	282	110668925	asnA	HQ3036A	-	asparaginase
1950	 49.61	0	2341452..2343116	-	554	110668926	-	HQ3037A	-	hypothetical protein
1951	 47.35	0	2343363..2343683	-	106	110668927	-	HQ3038A	-	hypothetical protein
1952	 47.41	0	2343807..2344211	+	134	110668928	-	HQ3039A	-	stress response protein
1953	 45.26	0	2344279..2345418	-	379	110668929	-	HQ3040A	-	hypothetical protein
1954	 45.11	0	2345573..2345920	-	115	110668930	-	HQ3041A	-	hypothetical protein
1955	 45.96	0	2346193..2346699	+	168	110668931	mobB	HQ3042A	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1956	 47.75	0	2346928..2347794	-	288	110668932	-	HQ3043A	-	hypothetical protein
48.79	MEAN

3.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.